Mercurial > repos > bgruening > cpat
annotate tool-data/all_fasta.loc.sample @ 2:7ccc6234b54e draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
author | bgruening |
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date | Tue, 23 Jul 2024 15:09:07 +0000 |
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2
7ccc6234b54e
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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1 #This file lists the locations and dbkeys of all the fasta files |
7ccc6234b54e
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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2 #under the "genome" directory (a directory that contains a directory |
7ccc6234b54e
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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3 #for each build). The script extract_fasta.py will generate the file |
7ccc6234b54e
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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4 #all_fasta.loc. This file has the format (white space characters are |
7ccc6234b54e
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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5 #TAB characters): |
7ccc6234b54e
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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6 # |
7ccc6234b54e
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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7 #<unique_build_id> <display_name> <file_path> |
7ccc6234b54e
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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8 # |
7ccc6234b54e
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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9 #So, all_fasta.loc could look something like this: |
7ccc6234b54e
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/cpat commit a447bd0404d45c185c4410dc9620e970d6995925
bgruening
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10 #test1 Test-Genome ./test-data/test1.fa.gz |