Mercurial > repos > bgruening > create_tool_recommendation_model

comparison test-data/test_tool_usage @ 6:e94dc7945639 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/recommendation_training/tools/tool_recommendation_model commit 24bab7a797f53fe4bcc668b18ee0326625486164
author bgruening
date Sun, 16 Oct 2022 11:52:10 +0000
parents 4f7e6612906b
children
comparison
equal deleted inserted replaced
5:4f7e6612906b 6:e94dc7945639
1 toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.6 2022-02-01 50054 1 tool_id | month | count
2 upload1 2022-02-01 43169 2 -----------------------------------------------------------------------------------------------------------------------------------------------------+------------+--------||
3 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/1.1.3 2022-02-01 39139 3 toolshed.g2.bx.psu.edu/repos/bgruening/sdf_to_tab/sdf_to_tab/2020.03.4+galaxy0 | 2022-09-01 |63928.0
4 Cut1 2022-02-01 29046 4 __DATA_FETCH__ | 2022-09-01 |32104.0
5 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_extractFields/4.3+t.galaxy0 2022-02-01 27481 5 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.73+galaxy0 | 2022-09-01 |6885.0
6 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.1+galaxy2 2022-02-01 17579 6 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_filter/4.3+t.galaxy1 | 2022-09-01 |3042.0
7 toolshed.g2.bx.psu.edu/repos/bgruening/align_it/ctb_alignit/1.0.4+galaxy0 2022-02-01 15902 7 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2 | 2022-09-01 |2661.0
8 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.73+galaxy0 2022-02-01 14479 8 toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.3.1 | 2022-09-01 |2279.0
9 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy1 2022-02-01 13513 9 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.1+galaxy2 | 2022-09-01 |2077.0
10 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy0 2022-02-01 13197 10 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy1 | 2022-09-01 |1898.0
11 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_annotate/bcftools_annotate/1.10 2022-02-01 13176 11 toolshed.g2.bx.psu.edu/repos/rnateam/mafft/rbc_mafft/7.505+galaxy0 | 2022-09-01 |1806.0
12 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_filter/lofreq_filter/2.1.5+galaxy0 2022-02-01 12931 12 Cut1 | 2022-09-01 |1726.0
13 Filter1 2022-02-01 12490 13 toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.1+galaxy1 | 2022-09-01 |1693.0
14 __UNZIP_COLLECTION__ 2022-02-01 12042 14 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 | 2022-09-01 |1683.0
15 toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0 2022-02-01 11810 15 CONVERTER_gz_to_uncompressed | 2022-09-01 |1656.0
16 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2 2022-02-01 11502 16 toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0 | 2022-09-01 |1584.0
17 toolshed.g2.bx.psu.edu/repos/devteam/vcfvcfintersect/vcfvcfintersect/1.0.0_rc3+galaxy0 2022-02-01 11487 17 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_annotate/bcftools_annotate/1.10 | 2022-09-01 |1550.0
18 toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.2+galaxy2 2022-02-01 10705 18 toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.6 | 2022-09-01 |1524.0
19 toolshed.g2.bx.psu.edu/repos/iuc/snpeff_sars_cov_2/snpeff_sars_cov_2/4.5covid19 2022-02-01 10569 19 Filter1 | 2022-09-01 |1463.0
20 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy0 2022-02-01 10545 20 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.24+galaxy0 | 2022-09-01 |1397.0
21 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_viterbi/lofreq_viterbi/2.1.5+galaxy0 2022-02-01 10543 21 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy0 | 2022-09-01 |1345.0
22 toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy2 2022-02-01 10456 22 Grouping1 | 2022-09-01 |1315.0
23 toolshed.g2.bx.psu.edu/repos/bgruening/replace_column_by_key_value_file/replace_column_with_key_value_file/0.2 2022-02-01 9307 23 toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.38.1 | 2022-09-01 |1315.0
24 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2d+galaxy3 2022-02-01 9275 24 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.2 | 2022-09-01 |1257.0
25 toolshed.g2.bx.psu.edu/repos/devteam/concat/gops_concat_1/1.0.1 2022-02-01 9066 25 toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.14.6+galaxy1 | 2022-09-01 |1214.0
26 toolshed.g2.bx.psu.edu/repos/devteam/subtract/gops_subtract_1/1.0.0 2022-02-01 9055 26 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_filter/lofreq_filter/2.1.5+galaxy0 | 2022-09-01 |1196.0
27 toolshed.g2.bx.psu.edu/repos/devteam/merge/gops_merge_1/1.0.0 2022-02-01 9038 27 Remove beginning1 | 2022-09-01 |1162.0
28 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.29.2 2022-02-01 9036 28 toolshed.g2.bx.psu.edu/repos/iuc/samtools_fastx/samtools_fastx/1.9+galaxy1 | 2022-09-01 |1141.0
29 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 2022-02-01 9001 29 toolshed.g2.bx.psu.edu/repos/devteam/vcfvcfintersect/vcfvcfintersect/1.0.0_rc3+galaxy0 | 2022-09-01 |1137.0
30 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.2 2022-02-01 7639 30 toolshed.g2.bx.psu.edu/repos/devteam/fastqtofasta/fastq_to_fasta_python/1.1.5 | 2022-09-01 |1073.0
31 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.10+galaxy1 2022-02-01 7325 31 interactive_tool_phinch | 2022-09-01 |1049.0
32 toolshed.g2.bx.psu.edu/repos/iuc/abricate/abricate/1.0.1 2022-02-01 7256 32 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_viterbi/lofreq_viterbi/2.1.5+galaxy0 | 2022-09-01 |1046.0
33 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_reheader/0.1.8_1 2022-02-01 7238 33 toolshed.g2.bx.psu.edu/repos/iuc/datamash_reverse/datamash_reverse/1.1.0+galaxy2 | 2022-09-01 |1043.0
34 toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0 2022-02-01 7178 34 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy0 | 2022-09-01 |1033.0
35 toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.3.1+galaxy2 2022-02-01 6751 35 toolshed.g2.bx.psu.edu/repos/iuc/biom_convert/biom_convert/2.1.12+galaxy1 | 2022-09-01 |1031.0
36 __FILTER_FAILED_DATASETS__ 2022-02-01 6565 36 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.4.5+galaxy1 | 2022-09-01 |998.0
37 toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.1+galaxy1 2022-02-01 6529 37 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.2.1+galaxy1 | 2022-09-01 |986.0
38 toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.3.1+galaxy2 2022-02-01 6479 38 toolshed.g2.bx.psu.edu/repos/iuc/read_it_and_keep/read_it_and_keep/0.2.2+galaxy0 | 2022-09-01 |954.0
39 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy0 2022-02-01 6397 39 toolshed.g2.bx.psu.edu/repos/devteam/fasta_to_tabular/fasta2tab/1.1.0 | 2022-09-01 |932.0
40 toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/1.2.4+galaxy0 2022-02-01 4890 40 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_extractFields/4.3+t.galaxy0 | 2022-09-01 |921.0
41 toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.38.1 2022-02-01 4702 41 toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/1.2.4+galaxy0 | 2022-09-01 |919.0
42 toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0 2022-02-01 4646 42 toolshed.g2.bx.psu.edu/repos/iuc/freyja_demix/freyja_demix/1.3.8+galaxy0 | 2022-09-01 |893.0
43 toolshed.g2.bx.psu.edu/repos/iuc/purge_dups/purge_dups/1.2.5+galaxy4 2022-02-01 4429 43 toolshed.g2.bx.psu.edu/repos/saskia-hiltemann/krona_text/krona-text/1 | 2022-09-01 |887.0
44 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1 2022-02-01 4240 44 toolshed.g2.bx.psu.edu/repos/iuc/snpeff_sars_cov_2/snpeff_sars_cov_2/4.5covid19 | 2022-09-01 |839.0
45 toolshed.g2.bx.psu.edu/repos/iuc/rna_starsolo/rna_starsolo/2.7.8a 2022-02-01 4099 45 toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.2+galaxy2 | 2022-09-01 |829.0
46 toolshed.g2.bx.psu.edu/repos/iuc/filter_tabular/filter_tabular/2.0.0 2022-02-01 3694 46 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.0+galaxy0 | 2022-09-01 |820.0
47 __DATA_FETCH__ 2022-02-01 3686 47 toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy2 | 2022-09-01 |815.0
48 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.24+galaxy0 2022-02-01 3234 48 toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.3.1+galaxy2 | 2022-09-01 |803.0
49 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtobed/2.30.0+galaxy2 2022-02-01 2936 49 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2d+galaxy3 | 2022-09-01 |802.0
50 toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.7.5+galaxy0 2022-02-01 2814 50 toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0 | 2022-09-01 |796.0
51 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.2.1+galaxy0 2022-02-01 2759 51 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2c+galaxy1 | 2022-09-01 |782.0
52 toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.3.1+galaxy0 2022-02-01 2442 52 __FILTER_FAILED_DATASETS__ | 2022-09-01 |771.0
53 toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.3.1+galaxy0 2022-02-01 2389 53 toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.3.1+galaxy2 | 2022-09-01 |761.0
54 CONVERTER_gz_to_uncompressed 2022-02-01 2340 54 toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.0.8_beta+galaxy0 | 2022-09-01 |750.0
55 Grouping1 2022-02-01 2333 55 toolshed.g2.bx.psu.edu/repos/iuc/abricate/abricate/1.0.1 | 2022-09-01 |717.0
56 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.30.0 2022-02-01 2288 56 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy0 | 2022-09-01 |710.0
57 sort1 2022-02-01 1937 57 Grep1 | 2022-09-01 |693.0
58 toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1 2022-02-01 1837 58 toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.6.7+galaxy0 | 2022-09-01 |687.0
59 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.10 2022-02-01 1793 59 __SET_METADATA__ | 2022-09-01 |617.0
60 toolshed.g2.bx.psu.edu/repos/iuc/plasflow/PlasFlow/1.0 2022-02-01 1782 60 toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.8.0 | 2022-09-01 |565.0
61 toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy2 2022-02-01 1769 61 toolshed.g2.bx.psu.edu/repos/devteam/fasta_to_tabular/fasta2tab/1.1.1 | 2022-09-01 |562.0
62 toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.14.6+galaxy1 2022-02-01 1718 62 toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fasta/tab2fasta/1.1.1 | 2022-09-01 |560.0
63 toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.1.0 2022-02-01 1446 63 toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.1.7+galaxy1 | 2022-09-01 |552.0
64 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.2 2022-02-01 1435 64 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.3 | 2022-09-01 |501.0
65 toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.1.7+galaxy1 2022-02-01 1432 65 cat1 | 2022-09-01 |498.0
66 toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.6.7+galaxy0 2022-02-01 1360 66 toolshed.g2.bx.psu.edu/repos/iuc/filter_tabular/filter_tabular/2.0.0 | 2022-09-01 |483.0
67 toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0 2022-02-01 1291 67 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_infer_experiment/2.6.4.1 | 2022-09-01 |478.0
68 __SET_METADATA__ 2022-02-01 1260 68 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.7+galaxy2 | 2022-09-01 |476.0
69 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.3.2.0.0 2022-02-01 1036 69 toolshed.g2.bx.psu.edu/repos/iuc/humann/humann/3.0.0+galaxy1 | 2022-09-01 |450.0
70 toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.3.0 2022-02-01 1019 70 join1 | 2022-09-01 |402.0
71 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy0 2022-02-01 973 71 CONVERTER_fastq_to_fqtoc0 | 2022-09-01 |400.0
72 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1 2022-02-01 962 72 toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.11.0+galaxy1 | 2022-09-01 |390.0
73 toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.11.0+galaxy1 2022-02-01 926 73 toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.36.2+galaxy1 | 2022-09-01 |363.0
74 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.3.2.0.0 2022-02-01 915 74 toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.3 | 2022-09-01 |344.0
75 toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.1.5 2022-02-01 907 75 ebi_sra_main | 2022-09-01 |344.0
76 toolshed.g2.bx.psu.edu/repos/iuc/obi_illumina_pairend/obi_illumina_pairend/1.2.13 2022-02-01 897 76 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.5.1.0.0 | 2022-09-01 |339.0
77 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_infer_experiment/2.6.4.1 2022-02-01 879 77 toolshed.g2.bx.psu.edu/repos/nml/ectyper/ectyper/1.0.0 | 2022-09-01 |335.0
78 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.4.5+galaxy0 2022-02-01 871 78 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.5.1.0.0 | 2022-09-01 |327.0
79 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.4.2+galaxy0 2022-02-01 862 79 toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.9.1+galaxy1 | 2022-09-01 |326.0
80 cat1 2022-02-01 795 80 toolshed.g2.bx.psu.edu/repos/devteam/clustalw/clustalw/2.1 | 2022-09-01 |324.0
81 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/3.5+galaxy1 2022-02-01 772 81 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/1.1.3 | 2022-09-01 |322.0
82 toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.11 2022-02-01 766 82 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SamToFastq/2.18.2.2 | 2022-09-01 |298.0
83 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_heatmap/deeptools_plot_heatmap/3.3.2.0.1 2022-02-01 758 83 toolshed.g2.bx.psu.edu/repos/iuc/b2btools_single_sequence/b2btools_single_sequence/3.0.5+galaxy0 | 2022-09-01 |289.0
84 toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.1 2022-02-01 705 84 toolshed.g2.bx.psu.edu/repos/devteam/concat/gops_concat_1/1.0.1 | 2022-09-01 |283.0
85 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.1.1.20160309.6 2022-02-01 652 85 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.10+galaxy1 | 2022-09-01 |282.0
86 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/2.10.1+galaxy0 2022-02-01 648 86 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_heatmap/deeptools_plot_heatmap/3.5.1.0.1 | 2022-09-01 |282.0
87 toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_mapping/seq_filter_by_mapping/0.0.6 2022-02-01 614 87 toolshed.g2.bx.psu.edu/repos/devteam/merge/gops_merge_1/1.0.0 | 2022-09-01 |281.0
88 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.7+galaxy1 2022-02-01 606 88 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.29.2 | 2022-09-01 |281.0
89 toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1 2022-02-01 588 89 toolshed.g2.bx.psu.edu/repos/devteam/subtract/gops_subtract_1/1.0.0 | 2022-09-01 |281.0
90 join1 2022-02-01 584 90 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy1 | 2022-09-01 |279.0
91 toolshed.g2.bx.psu.edu/repos/devteam/fastqtofasta/fastq_to_fasta_python/1.1.5 2022-02-01 580 91 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1 | 2022-09-01 |276.0
92 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/3.3.2.0.0 2022-02-01 555 92 toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.4 | 2022-09-01 |271.0
93 toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.9.1+galaxy1 2022-02-01 544 93 toolshed.g2.bx.psu.edu/repos/rnateam/sortmerna/bg_sortmerna/2.1b.6 | 2022-09-01 |269.0
94 toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_interlacer/fastq_paired_end_interlacer/1.2.0.1+galaxy0 | 2022-09-01 |253.0
95 toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy0 | 2022-09-01 |240.0
96 toolshed.g2.bx.psu.edu/repos/iuc/humann2/humann2/0.11.1.3 | 2022-09-01 |239.0
97 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/3.1.1+galaxy1 | 2022-09-01 |236.0
98 toolshed.g2.bx.psu.edu/repos/iuc/limma_voom/limma_voom/3.50.1+galaxy0 | 2022-09-01 |231.0
99 toolshed.g2.bx.psu.edu/repos/devteam/fastx_quality_statistics/cshl_fastx_quality_statistics/1.0.1 | 2022-09-01 |228.0
100 __UNZIP_COLLECTION__ | 2022-09-01 |223.0
101 toolshed.g2.bx.psu.edu/repos/iuc/annotatemyids/annotatemyids/3.14.0+galaxy0 | 2022-09-01 |223.0
102 toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.2.2+galaxy1 | 2022-09-01 |222.0
103 toolshed.g2.bx.psu.edu/repos/iuc/cooc_mutbamscan/cooc_mutbamscan/0.2+galaxy0 | 2022-09-01 |219.0
104 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2c | 2022-09-01 |218.0
105 toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_extract/umi_tools_extract/1.1.2+galaxy2 | 2022-09-01 |218.0
106 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_geneBody_coverage/2.6.4.3 | 2022-09-01 |217.0
107 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/2.10.1+galaxy2 | 2022-09-01 |213.0
108 toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy3 | 2022-09-01 |207.0
109 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_read_distribution/2.6.4.1 | 2022-09-01 |200.0
110 toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.15.1+galaxy0 | 2022-09-01 |197.0
111 ucsc_table_direct1 | 2022-09-01 |197.0
112 toolshed.g2.bx.psu.edu/repos/devteam/samtool_filter2/samtool_filter2/1.8+galaxy1 | 2022-09-01 |194.0
113 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.17.4 | 2022-09-01 |194.0
114 toolshed.g2.bx.psu.edu/repos/devteam/samtools_slice_bam/samtools_slice_bam/2.0.2 | 2022-09-01 |192.0
115 toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.2.2+galaxy1 | 2022-09-01 |188.0
116 toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0 | 2022-09-01 |187.0
117 toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2_quantifier/rbc_mirdeep2_quantifier/2.0.0 | 2022-09-01 |186.0
118 toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.7.5+galaxy1 | 2022-09-01 |172.0
119 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.30.0+galaxy1 | 2022-09-01 |166.0
120 toolshed.g2.bx.psu.edu/repos/iuc/deg_annotate/deg_annotate/1.1.0 | 2022-09-01 |163.0
121 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.7.1+galaxy1 | 2022-09-01 |157.0
122 toolshed.g2.bx.psu.edu/repos/devteam/samtools_rmdup/samtools_rmdup/2.0.1 | 2022-09-01 |156.0
123 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.7.1+galaxy0 | 2022-09-01 |151.0
124 toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/3.2 | 2022-09-01 |148.0
125 toolshed.g2.bx.psu.edu/repos/devteam/kraken_filter/kraken-filter/1.3.1 | 2022-09-01 |146.0
126 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1 | 2022-09-01 |145.0
127 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.4+galaxy1 | 2022-09-01 |144.0
128 toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2_mapper/rbc_mirdeep2_mapper/2.0.0 | 2022-09-01 |132.0
129 toolshed.g2.bx.psu.edu/repos/iuc/obi_uniq/obi_uniq/1.2.13 | 2022-09-01 |129.0
130 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/1.1.0.46-0 | 2022-09-01 |129.0
131 toolshed.g2.bx.psu.edu/repos/iuc/samtools_fastx/samtools_fastx/1.15.1+galaxy0 | 2022-09-01 |127.0
132 toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.4 | 2022-09-01 |126.0
133 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/3.5.1.0.0 | 2022-09-01 |123.0
134 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_inner_distance/2.6.4.1 | 2022-09-01 |120.0
135 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.2.1+galaxy0 | 2022-09-01 |120.0
136 toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0 | 2022-09-01 |118.0
137 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/1.1.2 | 2022-09-01 |118.0
138 CONVERTER_bam_to_coodinate_sorted_bam | 2022-09-01 |114.0
139 toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.7.5+galaxy0 | 2022-09-01 |110.0
140 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/2.10.1+galaxy2 | 2022-09-01 |108.0
141 toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.5 | 2022-09-01 |108.0
142 csv_to_tabular | 2022-09-01 |105.0
143 toolshed.g2.bx.psu.edu/repos/iuc/filtlong/filtlong/0.2.1+galaxy0 | 2022-09-01 |105.0
144 toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/2.2.1+galaxy0 | 2022-09-01 |104.0
145 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.1 | 2022-09-01 |104.0
146 toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/1.5.1+galaxy0 | 2022-09-01 |103.0
147 toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_dedup/umi_tools_dedup/1.1.2+galaxy2 | 2022-09-01 |102.0
148 sort1 | 2022-09-01 |101.0
149 toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.3 | 2022-09-01 |98.0
150 toolshed.g2.bx.psu.edu/repos/iuc/metaphlan/metaphlan/3.0.14+galaxy0 | 2022-09-01 |98.0
151 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.3.5+galaxy0 | 2022-09-01 |96.0
152 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_plotcells/monocle3_plotCells/0.1.5+galaxy1 | 2022-09-01 |95.0
153 toolshed.g2.bx.psu.edu/repos/bgruening/replace_column_by_key_value_file/replace_column_with_key_value_file/0.2 | 2022-09-01 |95.0
154 toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0 | 2022-09-01 |94.0
155 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.6+galaxy0 | 2022-09-01 |94.0
156 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 | 2022-09-01 |93.0
157 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.2.7.1+galaxy0 | 2022-09-01 |92.0
158 toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.2.7 | 2022-09-01 |91.0
159 toolshed.g2.bx.psu.edu/repos/bgruening/antismash/antismash/6.1.1+galaxy1 | 2022-09-01 |91.0
160 toolshed.g2.bx.psu.edu/repos/devteam/kraken_report/kraken-report/1.3.1 | 2022-09-01 |91.0
161 toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy3 | 2022-09-01 |90.0
162 toolshed.g2.bx.psu.edu/repos/devteam/kraken2tax/Kraken2Tax/1.1 | 2022-09-01 |89.0
163 toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1 | 2022-09-01 |87.0
164 toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1 | 2022-09-01 |87.0
165 toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1 | 2022-09-01 |87.0
166 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multiintersectbed/2.30.0 | 2022-09-01 |86.0
167 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3 | 2022-09-01 |85.0
168 toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.9+galaxy0 | 2022-09-01 |82.0
169 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy2 | 2022-09-01 |79.0
170 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtobed/2.30.0+galaxy2 | 2022-09-01 |79.0
171 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_sortbed/2.30.0+galaxy1 | 2022-09-01 |79.0
172 toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmsearch/1.1.2.0 | 2022-09-01 |78.0
173 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_cmfinder/cmFinder/0.4 | 2022-09-01 |78.0
174 toolshed.g2.bx.psu.edu/repos/bgruening/infernal/infernal_cmbuild/1.1.2.0 | 2022-09-01 |78.0
175 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_mlocarna/locarna_best_subtree/0.4 | 2022-09-01 |78.0
176 toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/datamash_ops/1.0.6 | 2022-09-01 |77.0
177 toolshed.g2.bx.psu.edu/repos/devteam/bowtie_wrappers/bowtie_wrapper/1.2.0 | 2022-09-01 |76.0
178 toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.1.0+galaxy1 | 2022-09-01 |75.0
179 toolshed.g2.bx.psu.edu/repos/devteam/fastx_barcode_splitter/cshl_fastx_barcode_splitter/1.0.1 | 2022-09-01 |74.0
180 toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/5.1.0 | 2022-09-01 |74.0
181 toolshed.g2.bx.psu.edu/repos/iuc/collection_column_join/collection_column_join/0.0.3 | 2022-09-01 |73.0
182 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_stats/bcftools_stats/1.10+galaxy1 | 2022-09-01 |73.0
183 toolshed.g2.bx.psu.edu/repos/iuc/hypo/hypo/1.0.3+galaxy0 | 2022-09-01 |73.0
184 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.2b | 2022-09-01 |72.0
185 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_bam_stat/2.6.4 | 2022-09-01 |71.0
186 toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/4.6.0+galaxy0 | 2022-09-01 |70.0
187 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.7+galaxy1 | 2022-09-01 |69.0
188 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0 | 2022-09-01 |68.0
189 __FLATTEN__ | 2022-09-01 |68.0
190 toolshed.g2.bx.psu.edu/repos/iuc/hmmer3/hmmer_hmmsearch/0.1.0 | 2022-09-01 |68.0
191 toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.2 | 2022-09-01 |67.0
192 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/2.10.1+galaxy2 | 2022-09-01 |66.0
193 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.2 | 2022-09-01 |66.0
194 toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.1.0+galaxy2 | 2022-09-01 |66.0
195 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_inspect/scanpy_inspect/1.7.1+galaxy0 | 2022-09-01 |65.0
196 toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.1.5 | 2022-09-01 |64.0
197 toolshed.g2.bx.psu.edu/repos/iuc/datamash_reverse/datamash_reverse/1.1.0 | 2022-09-01 |63.0
198 CONVERTER_fasta_to_tabular | 2022-09-01 |63.0
199 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_filter/scanpy_filter/1.7.1+galaxy0 | 2022-09-01 |62.0
200 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17+galaxy2 | 2022-09-01 |62.0
201 toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.6.1.1 | 2022-09-01 |62.0
202 toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.15.4+galaxy1 | 2022-09-01 |62.0
203 toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.4+galaxy0 | 2022-09-01 |62.0
204 toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.39.5.0 | 2022-09-01 |60.0
205 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_mpileup/bcftools_mpileup/1.10+galaxy2 | 2022-09-01 |59.0
206 toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.28.2+galaxy1 | 2022-09-01 |59.0
207 toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/2.2.1.3 | 2022-09-01 |59.0
208 __EXTRACT_DATASET__ | 2022-09-01 |59.0
209 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectInsertSizeMetrics/2.18.2.1 | 2022-09-01 |59.0
210 toolshed.g2.bx.psu.edu/repos/bebatut/combine_metaphlan2_humann2/combine_metaphlan2_humann2/0.1.0 | 2022-09-01 |58.0
211 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SortSam/2.18.2.1 | 2022-09-01 |58.0
212 toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.7.5+galaxy1 | 2022-09-01 |57.0
213 toolshed.g2.bx.psu.edu/repos/lparsons/fastq_join/fastq_join/1.1.2-806 | 2022-09-01 |57.0
214 toolshed.g2.bx.psu.edu/repos/iuc/graphlan_annotate/graphlan_annotate/1.0.0.0 | 2022-09-01 |57.0
215 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy0 | 2022-09-01 |57.0
216 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy0 | 2022-09-01 |56.0
217 CONVERTER_interval_to_bed_0 | 2022-09-01 |56.0
218 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0 | 2022-09-01 |56.0
219 toolshed.g2.bx.psu.edu/repos/iuc/pear/iuc_pear/0.9.6.2 | 2022-09-01 |56.0
220 toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.9.1 | 2022-09-01 |55.0
221 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrelate/hicexplorer_hiccorrelate/3.6+galaxy0 | 2022-09-01 |55.0
222 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bigwig_compare/deeptools_bigwig_compare/3.5.1.0.0 | 2022-09-01 |55.0
223 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CASM/2.18.2.1 | 2022-09-01 |55.0
224 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_tin/2.6.4.1 | 2022-09-01 |54.0
225 toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.3.2+galaxy1 | 2022-09-01 |54.0
226 toolshed.g2.bx.psu.edu/repos/iuc/edger/edger/3.36.0+galaxy0 | 2022-09-01 |54.0
227 toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.4 | 2022-09-01 |53.0
228 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.6.0+galaxy0 | 2022-09-01 |53.0
229 toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.1+galaxy0 | 2022-09-01 |53.0
230 toolshed.g2.bx.psu.edu/repos/bgruening/tgsgapcloser/tgsgapcloser/1.0.3+galaxy0 | 2022-09-01 |52.0
231 toolshed.g2.bx.psu.edu/repos/iuc/compress_file/compress_file/0.1.0 | 2022-09-01 |52.0
232 toolshed.g2.bx.psu.edu/repos/iuc/plasflow/PlasFlow/1.0 | 2022-09-01 |52.0
233 toolshed.g2.bx.psu.edu/repos/iuc/proteinortho/proteinortho/6.0.32+galaxy0 | 2022-09-01 |52.0
234 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_pca/ggplot2_pca/3.3.5+galaxy0 | 2022-09-01 |51.0
235 toolshed.g2.bx.psu.edu/repos/crs4/muscle/muscle/0.0.11 | 2022-09-01 |51.0
236 toolshed.g2.bx.psu.edu/repos/iuc/fastqe/fastqe/0.2.6+galaxy2 | 2022-09-01 |51.0
237 toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmscan/hmmer_hmmscan/3.3.2+galaxy0 | 2022-09-01 |50.0
238 toolshed.g2.bx.psu.edu/repos/iuc/roary/roary/3.13.0+galaxy2 | 2022-09-01 |49.0
239 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_read_GC/2.6.4 | 2022-09-01 |49.0
240 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.1+galaxy1 | 2022-09-01 |49.0
241 toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_splitter/fastq_paired_end_splitter/1.1.5+galaxy1 | 2022-09-01 |48.0
242 toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.44.0+galaxy2 | 2022-09-01 |48.0
243 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectGcBiasMetrics/2.18.2.1 | 2022-09-01 |48.0
244 toolshed.g2.bx.psu.edu/repos/devteam/picard/PicardInsertSize/1.56.0 | 2022-09-01 |48.0
245 toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy1 | 2022-09-01 |48.0
246 toolshed.g2.bx.psu.edu/repos/bgruening/canu/canu/2.1.1+galaxy0 | 2022-09-01 |47.0
247 toolshed.g2.bx.psu.edu/repos/iuc/mothur_screen_seqs/mothur_screen_seqs/1.39.5.1 | 2022-09-01 |47.0
248 toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_fasta/cshl_fastq_to_fasta/1.0.2 | 2022-09-01 |47.0
249 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 | 2022-09-01 |46.0
250 wig_to_bigWig | 2022-09-01 |46.0
251 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.3.2.0.0 | 2022-09-01 |46.0
252 toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.8.0+galaxy0 | 2022-09-01 |46.0
253 toolshed.g2.bx.psu.edu/repos/devteam/sam_merge/sam_merge2/1.2.0 | 2022-09-01 |45.0
254 toolshed.g2.bx.psu.edu/repos/simon-gladman/velvetoptimiser/velvetoptimiser/2.2.6 | 2022-09-01 |45.0
255 toolshed.g2.bx.psu.edu/repos/iuc/mothur_unique_seqs/mothur_unique_seqs/1.39.5.0 | 2022-09-01 |45.0
256 comp1 | 2022-09-01 |44.0
257 CONVERTER_interval_to_bedstrict_0 | 2022-09-01 |44.0
258 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.4.2+galaxy0 | 2022-09-01 |44.0
259 toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.3.1 | 2022-09-01 |44.0
260 toolshed.g2.bx.psu.edu/repos/iuc/iqtree/iqtree/2.1.2+galaxy2 | 2022-09-01 |43.0
261 toolshed.g2.bx.psu.edu/repos/devteam/tophat2/tophat2/2.1.1 | 2022-09-01 |42.0
262 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hictransform/hicexplorer_hictransform/3.6+galaxy0 | 2022-09-01 |42.0
263 toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/2.0.4 | 2022-09-01 |42.0
264 toolshed.g2.bx.psu.edu/repos/rnateam/peakachu/peakachu/0.1.0.2 | 2022-09-01 |41.0
265 param_value_from_file | 2022-09-01 |41.0
266 toolshed.g2.bx.psu.edu/repos/galaxyp/msstats/msstats/4.0.0.0 | 2022-09-01 |41.0
267 toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.5.2+galaxy0 | 2022-09-01 |40.0
268 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_cells/scanpy_filter_cells/1.6.0+galaxy0 | 2022-09-01 |40.0
269 toolshed.g2.bx.psu.edu/repos/iuc/bracken/est_abundance/2.7+galaxy1 | 2022-09-01 |40.0
270 toolshed.g2.bx.psu.edu/repos/devteam/fastx_clipper/cshl_fastx_clipper/1.0.1 | 2022-09-01 |40.0
271 toolshed.g2.bx.psu.edu/repos/devteam/fastx_reverse_complement/cshl_fastx_reverse_complement/1.0.0 | 2022-09-01 |40.0
272 toolshed.g2.bx.psu.edu/repos/devteam/vcf2tsv/vcf2tsv/0.0.3 | 2022-09-01 |40.0
273 toolshed.g2.bx.psu.edu/repos/iuc/megahit/megahit/1.2.9+galaxy0 | 2022-09-01 |40.0
274 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_correlation/deeptools_plot_correlation/3.5.1.0.0 | 2022-09-01 |40.0
275 toolshed.g2.bx.psu.edu/repos/iuc/ragtag/ragtag/2.1.0+galaxy0 | 2022-09-01 |40.0
276 CONVERTER_uncompressed_to_gz | 2022-09-01 |40.0
277 toolshed.g2.bx.psu.edu/repos/ethevenot/heatmap/Heatmap/2.2.2 | 2022-09-01 |40.0
278 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_tagbed/2.30.0 | 2022-09-01 |39.0
279 CONVERTER_bed_gff_or_vcf_to_bigwig_0 | 2022-09-01 |39.0
280 toolshed.g2.bx.psu.edu/repos/iuc/pilon/pilon/1.20.1 | 2022-09-01 |39.0
281 toolshed.g2.bx.psu.edu/repos/devteam/fastx_clipper/cshl_fastx_clipper/1.0.3+galaxy0 | 2022-09-01 |39.0
282 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy9 | 2022-09-01 |39.0
283 toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.1.2+galaxy1 | 2022-09-01 |38.0
284 toolshed.g2.bx.psu.edu/repos/iuc/bwameth/bwameth/0.2.3+galaxy0 | 2022-09-01 |38.0
285 CONVERTER_bam_to_bigwig_0 | 2022-09-01 |37.0
286 toolshed.g2.bx.psu.edu/repos/iuc/obi_clean/obi_clean/1.2.13 | 2022-09-01 |37.0
287 toolshed.g2.bx.psu.edu/repos/iuc/mothur_align_seqs/mothur_align_seqs/1.39.5.0 | 2022-09-01 |37.0
288 toolshed.g2.bx.psu.edu/repos/iuc/fasttree/fasttree/2.1.10+galaxy1 | 2022-09-01 |37.0
289 Convert characters1 | 2022-09-01 |37.0
290 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2 | 2022-09-01 |36.0
291 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.30.0 | 2022-09-01 |36.0
292 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/bamleftalign/1.3.1 | 2022-09-01 |36.0
293 toolshed.g2.bx.psu.edu/repos/rnateam/mafft/rbc_mafft_add/7.505+galaxy0 | 2022-09-01 |36.0
294 toolshed.g2.bx.psu.edu/repos/devteam/fastx_collapser/cshl_fastx_collapser/1.0.1 | 2022-09-01 |36.0
295 toolshed.g2.bx.psu.edu/repos/iuc/humann_renorm_table/humann_renorm_table/3.0.0+galaxy1 | 2022-09-01 |36.0
296 toolshed.g2.bx.psu.edu/repos/iuc/pygenometracks/pygenomeTracks/3.6+galaxy1 | 2022-09-01 |35.0
297 toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/3.15.4+galaxy2 | 2022-09-01 |35.0
298 toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/2.0.15+galaxy0 | 2022-09-01 |35.0
299 toolshed.g2.bx.psu.edu/repos/chemteam/mmpbsa_mmgbsa/mmpbsa_mmgbsa/21.10+galaxy0 | 2022-09-01 |35.0
300 toolshed.g2.bx.psu.edu/repos/devteam/bamtools/bamtools/2.5.1+galaxy0 | 2022-09-01 |35.0
301 tabular_to_csv | 2022-09-01 |34.0
302 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/2.30.0 | 2022-09-01 |34.0
303 toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer/fastq_trimmer/1.1.5 | 2022-09-01 |34.0
304 toolshed.g2.bx.psu.edu/repos/devteam/samtools_rmdup/samtools_rmdup/1.0.0 | 2022-09-01 |34.0
305 toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.4.4+galaxy1 | 2022-09-01 |33.0
306 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_multi_bam_summary/deeptools_multi_bam_summary/3.5.1.0.0 | 2022-09-01 |33.0
307 toolshed.g2.bx.psu.edu/repos/galaxyp/metagene_annotator/metagene_annotator/1.0.0 | 2022-09-01 |33.0
308 toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.2.1+galaxy0 | 2022-09-01 |33.0
309 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_compare/deeptools_bam_compare/3.5.1.0.0 | 2022-09-01 |33.0
310 upload1 | 2022-09-01 |33.0
311 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergematrixbins/hicexplorer_hicmergematrixbins/3.6+galaxy0 | 2022-09-01 |32.0
312 toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.46.2+galaxy0 | 2022-09-01 |32.0
313 toolshed.g2.bx.psu.edu/repos/iuc/pretext_map/pretext_map/0.1.9+galaxy0 | 2022-09-01 |32.0
314 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_head_tool/1.1.0 | 2022-09-01 |32.0
315 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.30.0 | 2022-09-01 |32.0
316 toolshed.g2.bx.psu.edu/repos/iuc/mothur_pre_cluster/mothur_pre_cluster/1.39.5.0 | 2022-09-01 |31.0
317 CONVERTER_interval_to_bgzip_0 | 2022-09-01 |31.0
318 CONVERTER_interval_to_bed12_0 | 2022-09-01 |31.0
319 toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy1 | 2022-09-01 |31.0
320 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1 | 2022-09-01 |31.0
321 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpSift_filter/3.4 | 2022-09-01 |30.0
322 toolshed.g2.bx.psu.edu/repos/iuc/ruvseq/ruvseq/1.26.0+galaxy0 | 2022-09-01 |30.0
323 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_filter/lofreq_filter/2.1.3.1+galaxy1 | 2022-09-01 |30.0
324 toolshed.g2.bx.psu.edu/repos/bebatut/format_metaphlan2_output/format_metaphlan2_output/0.1.0 | 2022-09-01 |30.0
325 ChangeCase | 2022-09-01 |30.0
326 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplottads/hicexplorer_hicplottads/2.1.4.0 | 2022-09-01 |30.0
327 toolshed.g2.bx.psu.edu/repos/iuc/qiime_extract_barcodes/qiime_extract_barcodes/1.9.1.0 | 2022-09-01 |30.0
328 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_reducedim/monocle3_reduceDim/0.1.4+galaxy0 | 2022-09-01 |29.0
329 Show beginning1 | 2022-09-01 |29.0
330 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindrestrictionsites/hicexplorer_hicfindrestrictionsites/3.6+galaxy0 | 2022-09-01 |29.0
331 toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2 | 2022-09-01 |28.0
332 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeSamFiles/2.18.2.1 | 2022-09-01 |28.0
333 toolshed.g2.bx.psu.edu/repos/iuc/bellerophon/bellerophon/1.0+galaxy0 | 2022-09-01 |28.0
334 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.17.5 | 2022-09-01 |28.0
335 CONVERTER_bed_to_fli_0 | 2022-09-01 |28.0
336 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_slopbed/2.30.0+galaxy1 | 2022-09-01 |28.0
337 toolshed.g2.bx.psu.edu/repos/ebi-gxa/anndata_ops/anndata_ops/1.6.0+galaxy1 | 2022-09-01 |28.0
338 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_pca/sklearn_pca/1.0.8.4+galaxy0 | 2022-09-01 |28.0
339 toolshed.g2.bx.psu.edu/repos/iuc/links/links/2.0.1+galaxy+1 | 2022-09-01 |28.0
340 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.6+galaxy0 | 2022-09-01 |28.0
341 toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/1.0.0 | 2022-09-01 |28.0
342 toolshed.g2.bx.psu.edu/repos/iuc/bctools_extract_alignment_ends/bctools_extract_alignment_ends/0.2.2 | 2022-09-01 |28.0
343 CONVERTER_interval_to_tabix_0 | 2022-09-01 |27.0
344 toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.2 | 2022-09-01 |27.0
345 toolshed.g2.bx.psu.edu/repos/devteam/fastx_trimmer/cshl_fastx_trimmer/1.0.2+galaxy0 | 2022-09-01 |27.0
346 toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.3+galaxy2 | 2022-09-01 |27.0
347 toolshed.g2.bx.psu.edu/repos/iuc/vcf2maf/vcf2maf/1.6.21 | 2022-09-01 |27.0
348 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.6.0+galaxy3 | 2022-09-01 |26.0
349 toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/uniprot/0.2 | 2022-09-01 |26.0
350 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1 | 2022-09-01 |26.0
351 toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6 | 2022-09-01 |26.0
352 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/3.4+galaxy1 | 2022-09-01 |26.0
353 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_preprocess/monocle3_preprocess/0.1.4+galaxy0 | 2022-09-01 |26.0
354 toolshed.g2.bx.psu.edu/repos/iuc/mothur_heatmap_sim/mothur_heatmap_sim/1.39.5.0 | 2022-09-01 |26.0
355 toolshed.g2.bx.psu.edu/repos/iuc/samtools_markdup/samtools_markdup/1.15.1+galaxy0 | 2022-09-01 |25.0
356 interactive_tool_rstudio | 2022-09-01 |25.0
357 toolshed.g2.bx.psu.edu/repos/imgteam/unzip/unzip/0.2 | 2022-09-01 |25.0
358 __TAG_FROM_FILE__ | 2022-09-01 |25.0
359 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.69 | 2022-09-01 |24.0
360 toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbmap/bbtools_bbmap/1.0.0+galaxy1.0.0 | 2022-09-01 |24.0
361 toolshed.g2.bx.psu.edu/repos/iuc/mageck_count/mageck_count/0.5.8.4 | 2022-09-01 |24.0
362 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_varcall/0.1.8_1 | 2022-09-01 |24.0
363 toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2/metaphlan2/2.6.0.0 | 2022-09-01 |24.0
364 toolshed.g2.bx.psu.edu/repos/iuc/gemini_query/gemini_query/0.20.1+galaxy2 | 2022-09-01 |24.0
365 toolshed.g2.bx.psu.edu/repos/devteam/macs/peakcalling_macs/1.0.1 | 2022-09-01 |24.0
366 toolshed.g2.bx.psu.edu/repos/iuc/ivar_consensus/ivar_consensus/1.3.1+galaxy0 | 2022-09-01 |24.0
367 toolshed.g2.bx.psu.edu/repos/iuc/mothur_filter_seqs/mothur_filter_seqs/1.39.5.0 | 2022-09-01 |24.0
368 toolshed.g2.bx.psu.edu/repos/iuc/pretext_snapshot/pretext_snapshot/0.0.3+galaxy1 | 2022-09-01 |24.0
369 addValue | 2022-09-01 |23.0
370 toolshed.g2.bx.psu.edu/repos/devteam/samtools_calmd/samtools_calmd/2.0.3 | 2022-09-01 |23.0
371 toolshed.g2.bx.psu.edu/repos/iuc/mummer_nucmer/mummer_nucmer/4.0.0rc1+galaxy2 | 2022-09-01 |23.0
372 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_DownsampleSam/2.18.2.1 | 2022-09-01 |23.0
373 toolshed.g2.bx.psu.edu/repos/galaxyp/msstatstmt/msstatstmt/2.0.0+galaxy0 | 2022-09-01 |23.0
374 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.3+galaxy0 | 2022-09-01 |23.0
375 toolshed.g2.bx.psu.edu/repos/iuc/trinity/trinity/2.9.1+galaxy2 | 2022-09-01 |23.0
376 toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer_by_quality/fastq_quality_trimmer/1.1.5 | 2022-09-01 |23.0
377 toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0 | 2022-09-01 |23.0
378 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_acc_download/ncbi_acc_download/0.2.7+galaxy0 | 2022-09-01 |23.0
379 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.8.1+galaxy0 | 2022-09-01 |22.0
380 toolshed.g2.bx.psu.edu/repos/iuc/meme_chip/meme_chip/4.11.2+galaxy1 | 2022-09-01 |22.0
381 toolshed.g2.bx.psu.edu/repos/devteam/varscan_version_2/varscan/2.4.2 | 2022-09-01 |22.0
382 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.30.0+galaxy1 | 2022-09-01 |22.0
383 interactive_tool_jupyter_notebook | 2022-09-01 |22.0
384 toolshed.g2.bx.psu.edu/repos/galaxyp/thermo_raw_file_converter/thermo_raw_file_converter/1.3.4+galaxy0 | 2022-09-01 |22.0
385 toolshed.g2.bx.psu.edu/repos/iuc/raven/raven/1.8.0+galaxy0 | 2022-09-01 |22.0
386 toolshed.g2.bx.psu.edu/repos/iuc/gemini_load/gemini_load/0.20.1+galaxy2 | 2022-09-01 |22.0
387 toolshed.g2.bx.psu.edu/repos/bgruening/trna_prediction/aragorn_trna/0.6 | 2022-09-01 |22.0
388 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_AddOrReplaceReadGroups/2.18.2.1 | 2022-09-01 |22.0
389 toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.7.5+galaxy0 | 2022-09-01 |22.0
390 toolshed.g2.bx.psu.edu/repos/iuc/pathview/pathview/1.34.0+galaxy0 | 2022-09-01 |21.0
391 toolshed.g2.bx.psu.edu/repos/iuc/prinseq/prinseq/0.20.4+galaxy2 | 2022-09-01 |21.0
392 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_prepocessing_for_mlocarna/preMloc/0.4 | 2022-09-01 |21.0
393 toolshed.g2.bx.psu.edu/repos/galaxyp/pepquery/pepquery/1.6.2+galaxy1 | 2022-09-01 |21.0
394 toolshed.g2.bx.psu.edu/repos/iuc/mageck_test/mageck_test/0.5.8.1 | 2022-09-01 |21.0
395 toolshed.g2.bx.psu.edu/repos/devteam/fastq_quality_filter/cshl_fastq_quality_filter/1.0.2+galaxy0 | 2022-09-01 |21.0
396 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/NSPDK_candidateClust/9.2.3.1 | 2022-09-01 |21.0
397 toolshed.g2.bx.psu.edu/repos/iuc/tximport/tximport/1.22.0 | 2022-09-01 |21.0
398 toolshed.g2.bx.psu.edu/repos/iuc/newick_utils/newick_display/1.6+galaxy1 | 2022-09-01 |21.0
399 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_postprocessing/glob_report/0.5 | 2022-09-01 |21.0
400 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/3.6+galaxy0 | 2022-09-01 |21.0
401 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_bam2wig/2.6.4 | 2022-09-01 |21.0
402 toolshed.g2.bx.psu.edu/repos/iuc/jvarkit_wgscoverageplotter/jvarkit_wgscoverageplotter/20201223+galaxy0 | 2022-09-01 |21.0
403 toolshed.g2.bx.psu.edu/repos/iuc/gatk4_mutect2/gatk4_mutect2/4.1.7.0+galaxy1 | 2022-09-01 |20.0
404 toolshed.g2.bx.psu.edu/repos/iuc/ngsutils_bam_filter/ngsutils_bam_filter/0.5.9 | 2022-09-01 |20.0
405 toolshed.g2.bx.psu.edu/repos/iuc/kraken_taxonomy_report/kraken_taxonomy_report/0.0.2 | 2022-09-01 |20.0
406 toolshed.g2.bx.psu.edu/repos/bgruening/fastq_info/fastq_info/0.25.1+Galaxy0 | 2022-09-01 |20.0
407 toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/samtools_mpileup/2.1.6 | 2022-09-01 |20.0
408 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/3.6+galaxy0 | 2022-09-01 |20.0
409 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_genome/13.35.0+galaxy0 | 2022-09-01 |20.0
410 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_partition/monocle3_partition/0.1.4+galaxy0 | 2022-09-01 |20.0
411 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_heatmap/deeptools_plot_heatmap/3.3.2.0.1 | 2022-09-01 |20.0
412 toolshed.g2.bx.psu.edu/repos/iuc/abricate/abricate_summary/1.0.1 | 2022-09-01 |20.0
413 toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.3+galaxy2 | 2022-09-01 |20.0
414 toolshed.g2.bx.psu.edu/repos/devteam/fastx_collapser/cshl_fastx_collapser/1.0.0 | 2022-09-01 |20.0
415 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_cluster_reduce_dimension/scanpy_cluster_reduce_dimension/1.7.1+galaxy0 | 2022-09-01 |20.0
416 toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.3.0 | 2022-09-01 |20.0
417 toolshed.g2.bx.psu.edu/repos/bgruening/cp_common/cp_common/3.1.9+galaxy1 | 2022-09-01 |19.0
418 toolshed.g2.bx.psu.edu/repos/bgruening/cp_color_to_gray/cp_color_to_gray/3.1.9+galaxy0 | 2022-09-01 |19.0
419 toolshed.g2.bx.psu.edu/repos/bgruening/cp_cellprofiler/cp_cellprofiler/3.1.9+galaxy0 | 2022-09-01 |19.0
420 toolshed.g2.bx.psu.edu/repos/iuc/fastani/fastani/1.3 | 2022-09-01 |19.0
421 toolshed.g2.bx.psu.edu/repos/iuc/mlst/mlst/2.22.0 | 2022-09-01 |19.0
422 toolshed.g2.bx.psu.edu/repos/devteam/gffread/gffread/2.2.1.3+galaxy0 | 2022-09-01 |19.0
423 toolshed.g2.bx.psu.edu/repos/iuc/trinity_align_and_estimate_abundance/trinity_align_and_estimate_abundance/2.9.1+galaxy1 | 2022-09-01 |19.0
424 toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy2 | 2022-09-01 |19.0
425 toolshed.g2.bx.psu.edu/repos/devteam/cuffmerge/cuffmerge/2.2.1.3 | 2022-09-01 |19.0
426 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtofastq/2.27.1 | 2022-09-01 |19.0
427 toolshed.g2.bx.psu.edu/repos/bgruening/cp_save_images/cp_save_images/3.1.9+galaxy1 | 2022-09-01 |19.0
428 toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie_merge/2.1.7+galaxy1 | 2022-09-01 |19.0
429 toolshed.g2.bx.psu.edu/repos/iuc/graphlan/graphlan/1.0.0.0 | 2022-09-01 |19.0
430 toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.2.2+galaxy0 | 2022-09-01 |18.0
431 toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_vsearch/mothur_chimera_vsearch/1.39.5.1 | 2022-09-01 |18.0
432 toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/1.6.17.0+galaxy4 | 2022-09-01 |18.0
433 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/2.10.1+galaxy2 | 2022-09-01 |18.0
434 CONVERTER_gff_to_bed_0 | 2022-09-01 |18.0
435 toolshed.g2.bx.psu.edu/repos/bgruening/cp_export_to_spreadsheet/cp_export_to_spreadsheet/3.1.9+galaxy1 | 2022-09-01 |18.0
436 __MERGE_COLLECTION__ | 2022-09-01 |18.0
437 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaverageregions/hicexplorer_hicaverageregions/3.6+galaxy0 | 2022-09-01 |18.0
438 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_tsv2bam/stacks2_tsv2bam/2.55+galaxy4 | 2022-09-01 |18.0
439 toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.7.5+galaxy1 | 2022-09-01 |18.0
440 toolshed.g2.bx.psu.edu/repos/iuc/flash/flash/1.2.11.4 | 2022-09-01 |17.0
441 toolshed.g2.bx.psu.edu/repos/bgruening/interproscan/interproscan/5.55-88.0+galaxy3 | 2022-09-01 |17.0
442 toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.2 | 2022-09-01 |17.0
443 toolshed.g2.bx.psu.edu/repos/iuc/ivar_variants/ivar_variants/1.3.1+galaxy2 | 2022-09-01 |17.0
444 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.3.2.0.0 | 2022-09-01 |17.0
445 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_fingerprint/deeptools_plot_fingerprint/3.5.1.0.0 | 2022-09-01 |17.0
446 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicbuildmatrix/hicexplorer_hicbuildmatrix/3.6+galaxy0 | 2022-09-01 |16.0
447 toolshed.g2.bx.psu.edu/repos/galaxyp/filter_by_fasta_ids/filter_by_fasta_ids/2.1 | 2022-09-01 |16.0
448 toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0 | 2022-09-01 |16.0
449 toolshed.g2.bx.psu.edu/repos/devteam/kraken/kraken/1.3.1 | 2022-09-01 |16.0
450 toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0.1 | 2022-09-01 |16.0
451 toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2krona/metaphlan2krona/2.6.0.0 | 2022-09-01 |16.0
452 toolshed.g2.bx.psu.edu/repos/devteam/vcfselectsamples/vcfselectsamples/1.0.0_rc1+galaxy0 | 2022-09-01 |16.0
453 toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_sample/1.3.2 | 2022-09-01 |16.0
454 toolshed.g2.bx.psu.edu/repos/iuc/filtlong/filtlong/0.2.0 | 2022-09-01 |16.0
455 toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0 | 2022-09-01 |16.0
456 toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1+galaxy0 | 2022-09-01 |15.0
457 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/2.10.1+galaxy2 | 2022-09-01 |15.0
458 toolshed.g2.bx.psu.edu/repos/bgruening/plotly_parallel_coordinates_plot/plotly_parallel_coordinates_plot/0.1 | 2022-09-01 |15.0
459 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7 | 2022-09-01 |15.0
460 toolshed.g2.bx.psu.edu/repos/artbio/concatenate_multiple_datasets/cat_multi_datasets/1.4.1 | 2022-09-01 |15.0
461 toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbmap/bbtools_bbmap/1.0.0+galaxy4 | 2022-09-01 |15.0
462 toolshed.g2.bx.psu.edu/repos/iuc/recentrifuge/recentrifuge/1.9.1+galaxy1 | 2022-09-01 |15.0
463 toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy1 | 2022-09-01 |15.0
464 toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_bowtie2/0.22.1+galaxy4 | 2022-09-01 |15.0
465 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_varextract/0.1.8_1 | 2022-09-01 |15.0
466 toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.2.0 | 2022-09-01 |15.0
467 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina/docking/1.2.3+galaxy0 | 2022-09-01 |14.0
468 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_contigs/mothur_make_contigs/1.39.5.1 | 2022-09-01 |14.0
469 toolshed.g2.bx.psu.edu/repos/iuc/trycycler_cluster/trycycler_cluster/0.5.3 | 2022-09-01 |14.0
470 CONVERTER_bz2_to_uncompressed | 2022-09-01 |14.0
471 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_ordercells/monocle3_orderCells/0.1.4+galaxy0 | 2022-09-01 |14.0
472 toolshed.g2.bx.psu.edu/repos/crs4/sopra/sopra_wpc/0.1 | 2022-09-01 |14.0
473 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/1.0.8.4 | 2022-09-01 |14.0
474 CONVERTER_bam_to_qname_sorted_bam | 2022-09-01 |14.0
475 toolshed.g2.bx.psu.edu/repos/iuc/samtools_depth/samtools_depth/1.15.1+galaxy0 | 2022-09-01 |14.0
476 toolshed.g2.bx.psu.edu/repos/devteam/vcffixup/vcffixup/1.0.0_rc1+galaxy0 | 2022-09-01 |14.0
477 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.63 | 2022-09-01 |14.0
478 toolshed.g2.bx.psu.edu/repos/iuc/mitos2/mitos2/2.0.6+galaxy2 | 2022-09-01 |14.0
479 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.1.0+galaxy7 | 2022-09-01 |14.0
480 toolshed.g2.bx.psu.edu/repos/iuc/trinity_analyze_diff_expr/trinity_analyze_diff_expr/2.8.4+galaxy1 | 2022-09-01 |14.0
481 toolshed.g2.bx.psu.edu/repos/rnateam/splitfasta/rbc_splitfasta/0.2.0 | 2022-09-01 |14.0
482 toolshed.g2.bx.psu.edu/repos/devteam/xy_plot/XY_Plot_1/1.0.2 | 2022-09-01 |14.0
483 toolshed.g2.bx.psu.edu/repos/iuc/jellyfish/jellyfish/2.3.0+galaxy0 | 2022-09-01 |13.0
484 toolshed.g2.bx.psu.edu/repos/devteam/join/gops_join_1/1.0.0 | 2022-09-01 |13.0
485 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.6.0+galaxy0 | 2022-09-01 |13.0
486 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_umap/scanpy_run_umap/1.6.0+galaxy1 | 2022-09-01 |13.0
487 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_normalise_data/scanpy_normalise_data/1.6.0+galaxy0 | 2022-09-01 |13.0
488 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.6.0+galaxy2 | 2022-09-01 |13.0
489 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.6.0+galaxy1 | 2022-09-01 |13.0
490 toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/2.0.3 | 2022-09-01 |13.0
491 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_normalize/scanpy_normalize/1.7.1+galaxy0 | 2022-09-01 |13.0
492 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.6.0+galaxy4 | 2022-09-01 |13.0
493 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_remove_confounders/scanpy_remove_confounders/1.7.1+galaxy0 | 2022-09-01 |13.0
494 toolshed.g2.bx.psu.edu/repos/chemteam/parmconv/parmconv/21.10+galaxy0 | 2022-09-01 |13.0
495 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.9+galaxy1 | 2022-09-01 |13.0
496 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.6.0+galaxy0 | 2022-09-01 |13.0
497 CONVERTER_sam_to_bigwig_0 | 2022-09-01 |13.0
498 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_genes/scanpy_filter_genes/1.6.0+galaxy0 | 2022-09-01 |13.0
499 toolshed.g2.bx.psu.edu/repos/rnateam/chipseeker/chipseeker/1.28.3+galaxy0 | 2022-09-01 |13.0
500 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.6.0+galaxy4 | 2022-09-01 |13.0
501 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a | 2022-09-01 |12.0
502 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.3 | 2022-09-01 |12.0
503 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/3.6+galaxy0 | 2022-09-01 |12.0
504 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.1.0+galaxy3 | 2022-09-01 |12.0
505 toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster_split/mothur_cluster_split/1.39.5.0 | 2022-09-01 |12.0
506 toolshed.g2.bx.psu.edu/repos/iuc/mothur_anosim/mothur_anosim/1.39.5.0 | 2022-09-01 |12.0
507 toolshed.g2.bx.psu.edu/repos/iuc/humann2_unpack_pathways/humann2_unpack_pathways/0.11.1.1 | 2022-09-01 |12.0
508 toolshed.g2.bx.psu.edu/repos/devteam/samtools_rmdup/samtools_rmdup/2.0 | 2022-09-01 |12.0
509 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3 | 2022-09-01 |12.0
510 toolshed.g2.bx.psu.edu/repos/iuc/bioext_bam2msa/bioext_bam2msa/0.20.4+galaxy0 | 2022-09-01 |12.0
511 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_data_exporter/cardinal_data_exporter/2.10.0.0 | 2022-09-01 |12.0
512 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.1 | 2022-09-01 |12.0
513 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_vcf_filter/0.1.8_1 | 2022-09-01 |12.0
514 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.6.0b-2 | 2022-09-01 |12.0
515 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.1.0 | 2022-09-01 |12.0
516 toolshed.g2.bx.psu.edu/repos/iuc/samtools_merge/samtools_merge/1.15.1+galaxy0 | 2022-09-01 |12.0
517 toolshed.g2.bx.psu.edu/repos/devteam/cuffcompare/cuffcompare/2.2.1.2 | 2022-09-01 |12.0
518 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_shared/mothur_make_shared/1.39.5.0 | 2022-09-01 |12.0
519 toolshed.g2.bx.psu.edu/repos/bebatut/group_humann2_uniref_abundances_to_go/group_humann2_uniref_abundances_to_go/1.2.3 | 2022-09-01 |12.0
520 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicadjustmatrix/hicexplorer_hicadjustmatrix/3.6+galaxy0 | 2022-09-01 |12.0
521 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FixMateInformation/2.18.2.1 | 2022-09-01 |12.0
522 toolshed.g2.bx.psu.edu/repos/csbl/repeatmodeler/repeatmodeler/2.0.3+galaxy0 | 2022-09-01 |12.0
523 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/2.10.1+galaxy0 | 2022-09-01 |12.0
524 toolshed.g2.bx.psu.edu/repos/iuc/dada2_filterandtrim/dada2_filterAndTrim/1.20+galaxy0 | 2022-09-01 |12.0
525 toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.2 | 2022-09-01 |12.0
526 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccompartmentspolarization/hicexplorer_hiccompartmentspolarization/3.6+galaxy0 | 2022-09-01 |12.0
527 toolshed.g2.bx.psu.edu/repos/iuc/seqkit_stats/seqkit_stats/2.2.0+galaxy0 | 2022-09-01 |12.0
528 gbk_to_orf | 2022-09-01 |12.0
529 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_rmsd/bio3d_rmsd/2.3.4 | 2022-09-01 |12.0
530 toolshed.g2.bx.psu.edu/repos/bgruening/sailfish/sailfish/0.10.1.1 | 2022-09-01 |12.0
531 toolshed.g2.bx.psu.edu/repos/iuc/humann2/humann2/0.11.1.0 | 2022-09-01 |11.0
532 Count1 | 2022-09-01 |11.0
533 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/2.4.1.0 | 2022-09-01 |11.0
534 toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.6 | 2022-09-01 |11.0
535 toolshed.g2.bx.psu.edu/repos/iuc/export2graphlan/export2graphlan/0.19 | 2022-09-01 |11.0
536 toolshed.g2.bx.psu.edu/repos/lparsons/fastq_join/fastq_join/1.1.2-806.1 | 2022-09-01 |11.0
537 toolshed.g2.bx.psu.edu/repos/iuc/trinity_samples_qccheck/trinity_samples_qccheck/2.8.4 | 2022-09-01 |11.0
538 toolshed.g2.bx.psu.edu/repos/devteam/sam_pileup/sam_pileup/1.1.1 | 2022-09-01 |11.0
539 velveth | 2022-09-01 |11.0
540 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_rnaseq/qualimap_rnaseq/2.2.2c+galaxy1 | 2022-09-01 |11.0
541 toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnafold/viennarna_rnafold/2.2.10.4 | 2022-09-01 |11.0
542 toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_dereplication/1.9.7.0 | 2022-09-01 |11.0
543 toolshed.g2.bx.psu.edu/repos/iuc/snp_dists/snp_dists/0.6.3+galaxy0 | 2022-09-01 |11.0
544 toolshed.g2.bx.psu.edu/repos/iuc/humann2_genefamilies_genus_level/humann2_genefamilies_genus_level/0.11.1.0 | 2022-09-01 |11.0
545 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_create/monocle3_create/0.1.4+galaxy2 | 2022-09-01 |11.0
546 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_norm/bcftools_norm/1.9+galaxy1 | 2022-09-01 |11.0
547 toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.14.6+galaxy0 | 2022-09-01 |11.0
548 toolshed.g2.bx.psu.edu/repos/bgruening/prepare_ligands_for_docking/prepare_ligands_for_docking/3.1.1+galaxy0 | 2022-09-01 |11.0
549 toolshed.g2.bx.psu.edu/repos/bebatut/group_humann2_uniref_abundances_to_go/group_humann2_uniref_abundances_to_go/1.2.0 | 2022-09-01 |11.0
550 toolshed.g2.bx.psu.edu/repos/mvdbeek/add_input_name_as_column/addName/0.2.0 | 2022-09-01 |11.0
551 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: extractseq35/5.0.0 | 2022-09-01 |11.0
552 toolshed.g2.bx.psu.edu/repos/rnateam/sortmerna/bg_sortmerna/2.1b.5 | 2022-09-01 |11.0
553 toolshed.g2.bx.psu.edu/repos/devteam/vcffilter/vcffilter2/1.0.0_rc3+galaxy3 | 2022-09-01 |11.0
554 toolshed.g2.bx.psu.edu/repos/devteam/cuffdiff/cuffdiff/2.2.1.6 | 2022-09-01 |11.0
555 toolshed.g2.bx.psu.edu/repos/iuc/gtftobed12/gtftobed12/357 | 2022-09-01 |11.0
556 toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_seqs/mothur_remove_seqs/1.39.5.0 | 2022-09-01 |11.0
557 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_setup/gmx_setup/2022+galaxy0 | 2022-09-01 |11.0
558 CONVERTER_bedgraph_to_bigwig | 2022-09-01 |11.0
559 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.71 | 2022-09-01 |11.0
560 toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.2 | 2022-09-01 |11.0
561 toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy2 | 2022-09-01 |11.0
562 toolshed.g2.bx.psu.edu/repos/galaxy-australia/smudgeplot/smudgeplot/0.2.5+galaxy+1 | 2022-09-01 |11.0
563 toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regex1/1.0.2 | 2022-09-01 |11.0
564 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_varreport/0.1.8_1 | 2022-09-01 |11.0
565 toolshed.g2.bx.psu.edu/repos/bgruening/cp_measure_object_size_shape/cp_measure_object_size_shape/3.1.9+galaxy0 | 2022-09-01 |10.0
566 toolshed.g2.bx.psu.edu/repos/bgruening/cp_identify_primary_objects/cp_identify_primary_objects/3.1.9+galaxy1 | 2022-09-01 |10.0
567 toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/quality_metrics/2.2.8 | 2022-09-01 |10.0
568 toolshed.g2.bx.psu.edu/repos/bgruening/rxdock_rbdock/rxdock_rbdock/0.1.5 | 2022-09-01 |10.0
569 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicatesWithMateCigar/2.18.2.2 | 2022-09-01 |10.0
570 toolshed.g2.bx.psu.edu/repos/bgruening/cp_overlay_outlines/cp_overlay_outlines/3.1.9+galaxy0 | 2022-09-01 |10.0
571 toolshed.g2.bx.psu.edu/repos/iuc/strelka_germline/strelka_germline/2.9.10+galaxy0 | 2022-09-01 |10.0
572 toolshed.g2.bx.psu.edu/repos/bgruening/cp_measure_object_intensity/cp_measure_object_intensity/3.1.9+galaxy0 | 2022-09-01 |10.0
573 toolshed.g2.bx.psu.edu/repos/devteam/vcfbedintersect/vcfbedintersect/1.0.0_rc1+galaxy0 | 2022-09-01 |10.0
574 toolshed.g2.bx.psu.edu/repos/bgruening/cp_track_objects/cp_track_objects/3.1.9+galaxy0 | 2022-09-01 |10.0
575 __EXPORT_HISTORY__ | 2022-09-01 |10.0
576 toolshed.g2.bx.psu.edu/repos/iuc/annotatemyids/annotatemyids/3.12.0+galaxy1 | 2022-09-01 |10.0
577 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.4.5+galaxy0 | 2022-09-01 |10.0
578 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/2.2.1+galaxy1 | 2022-09-01 |10.0
579 toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs/mothur_classify_seqs/1.39.5.0 | 2022-09-01 |10.0
580 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_learngraph/monocle3_learnGraph/0.1.4+galaxy0 | 2022-09-01 |10.0
581 toolshed.g2.bx.psu.edu/repos/peterjc/mira_assembler/mira_assembler/0.0.11 | 2022-09-01 |10.0
582 toolshed.g2.bx.psu.edu/repos/iuc/samtools_coverage/samtools_coverage/1.15.1+galaxy0 | 2022-09-01 |10.0
583 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: union105/5.0.0 | 2022-09-01 |10.0
584 toolshed.g2.bx.psu.edu/repos/iuc/abyss/abyss-pe/2.3.4+galaxy1 | 2022-09-01 |10.0
585 velvetg | 2022-09-01 |10.0
586 toolshed.g2.bx.psu.edu/repos/devteam/fasta_concatenate_by_species/fasta_concatenate0/0.0.1 | 2022-09-01 |10.0
587 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/4.3+T.galaxy4 | 2022-09-01 |10.0
588 toolshed.g2.bx.psu.edu/repos/bgruening/cp_tile/cp_tile/3.1.9+galaxy0 | 2022-09-01 |10.0
589 toolshed.g2.bx.psu.edu/repos/iuc/gffcompare/gffcompare/0.11.2 | 2022-09-01 |10.0
590 toolshed.g2.bx.psu.edu/repos/rnateam/structure_to_gspan/structure_to_gspan/0.4 | 2022-09-01 |10.0
591 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_preprocessing/preproc/0.5 | 2022-09-01 |10.0
592 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/2.2.1+galaxy2 | 2022-09-01 |10.0
593 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: needle56/5.0.0.1 | 2022-09-01 |9.0
594 toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.9+galaxy0 | 2022-09-01 |9.0
595 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_multi_bigwig_summary/deeptools_multi_bigwig_summary/3.5.1.0.0 | 2022-09-01 |9.0
596 toolshed.g2.bx.psu.edu/repos/iuc/mothur_reverse_seqs/mothur_reverse_seqs/1.39.5.0 | 2022-09-01 |9.0
597 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.6+galaxy0 | 2022-09-01 |9.0
598 toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.7.1+galaxy2 | 2022-09-01 |9.0
599 toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_dedup/umi_tools_dedup/0.5.3.0 | 2022-09-01 |9.0
600 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed_histogram/2.19.0 | 2022-09-01 |9.0
601 toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.3.0 | 2022-09-01 |9.0
602 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_procrad/stacks2_procrad/2.55+galaxy4 | 2022-09-01 |9.0
603 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicconvertformat/hicexplorer_hicconvertformat/3.6+galaxy0 | 2022-09-01 |9.0
604 toolshed.g2.bx.psu.edu/repos/iuc/kraken_biom/kraken_biom/1.0.1+galaxy0 | 2022-09-01 |9.0
605 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_alnqual/lofreq_alnqual/2.1.5+galaxy1 | 2022-09-01 |9.0
606 toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.14.5+galaxy0 | 2022-09-01 |9.0
607 toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.5+galaxy1 | 2022-09-01 |9.0
608 toolshed.g2.bx.psu.edu/repos/iuc/ivar_consensus/ivar_consensus/1.2.2+galaxy0 | 2022-09-01 |9.0
609 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_enrichment/deeptools_plot_enrichment/3.5.1.0.0 | 2022-09-01 |9.0
610 toolshed.g2.bx.psu.edu/repos/iuc/ivar_variants/ivar_variants/1.2+galaxy0 | 2022-09-01 |9.0
611 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.8.1 | 2022-09-01 |9.0
612 toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_extract/umi_tools_extract/0.5.5.1 | 2022-09-01 |9.0
613 toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_polya/nanopolish_polya/0.13.2+galaxy0 | 2022-09-01 |9.0
614 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_counts/qualimap_counts/2.2.2c | 2022-09-01 |9.0
615 toolshed.g2.bx.psu.edu/repos/iuc/progressivemauve/progressivemauve/2015_02_13.1 | 2022-09-01 |9.0
616 toolshed.g2.bx.psu.edu/repos/devteam/fastx_reverse_complement/cshl_fastx_reverse_complement/1.0.2+galaxy0 | 2022-09-01 |9.0
617 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_cells/scanpy_filter_cells/1.8.1+galaxy0 | 2022-09-01 |9.0
618 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_raxml/1.0.0 | 2022-09-01 |9.0
619 __FILTER_FROM_FILE__ | 2022-09-01 |9.0
620 wc_gnu | 2022-09-01 |9.0
621 toolshed.g2.bx.psu.edu/repos/iuc/trinotate/trinotate/3.2.2+galaxy0 | 2022-09-01 |9.0
622 toolshed.g2.bx.psu.edu/repos/iuc/freyja_aggregate_plot/freyja_aggregate_plot/1.3.8+galaxy0 | 2022-09-01 |9.0
623 toolshed.g2.bx.psu.edu/repos/ebi-gxa/anndata_ops/anndata_ops/1.8.1+galaxy0 | 2022-09-01 |9.0
624 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_efetch/ncbi_eutils_efetch/1.2 | 2022-09-01 |9.0
625 toolshed.g2.bx.psu.edu/repos/iuc/mummer_dnadiff/mummer_dnadiff/4.0.0rc1+galaxy2 | 2022-09-01 |9.0
626 toolshed.g2.bx.psu.edu/repos/iuc/spades_plasmidspades/spades_plasmidspades/3.15.4+galaxy2 | 2022-09-01 |9.0
627 toolshed.g2.bx.psu.edu/repos/iuc/tbl2gff3/tbl2gff3/1.1 | 2022-09-01 |9.0
628 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed_bedgraph/2.19.0 | 2022-09-01 |9.0
629 toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/1.2a+galaxy1 | 2022-09-01 |9.0
630 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.8.1 | 2022-09-01 |9.0
631 toolshed.g2.bx.psu.edu/repos/devteam/count_covariates/gatk_count_covariates/0.0.5 | 2022-09-01 |9.0
632 toolshed.g2.bx.psu.edu/repos/iuc/dexseq/dexseq_count/1.28.1.1 | 2022-09-01 |8.0
633 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_quality_report/cardinal_quality_report/2.10.0.0 | 2022-09-01 |8.0
634 toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.4 | 2022-09-01 |8.0
635 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.8+galaxy1 | 2022-09-01 |8.0
636 toolshed.g2.bx.psu.edu/repos/iuc/pe_histogram/pe_histogram/1.0.1 | 2022-09-01 |8.0
637 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpSift_annotate/3.4 | 2022-09-01 |8.0
638 toolshed.g2.bx.psu.edu/repos/devteam/vcf2tsv/vcf2tsv/1.0.0_rc3+galaxy0 | 2022-09-01 |8.0
639 toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy_core/3.2 | 2022-09-01 |8.0
640 toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.2.0 | 2022-09-01 |8.0
641 toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/2.1.8+galaxy3 | 2022-09-01 |8.0
642 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_read_10x/scanpy_read_10x/1.8.1+galaxy0 | 2022-09-01 |8.0
643 CONVERTER_ref_to_seq_taxomony | 2022-09-01 |8.0
644 toolshed.g2.bx.psu.edu/repos/iuc/gemini_stats/gemini_stats/0.20.1 | 2022-09-01 |8.0
645 toolshed.g2.bx.psu.edu/repos/nml/sistr_cmd/sistr_cmd/1.1.1+galaxy1 | 2022-09-01 |8.0
646 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.3 | 2022-09-01 |8.0
647 toolshed.g2.bx.psu.edu/repos/iuc/mothur_taxonomy_to_krona/mothur_taxonomy_to_krona/1.0 | 2022-09-01 |8.0
648 toolshed.g2.bx.psu.edu/repos/iuc/homer_findmotifsgenome/homer_findMotifsGenome/4.11+galaxy2 | 2022-09-01 |8.0
649 toolshed.g2.bx.psu.edu/repos/iuc/samtools_fixmate/samtools_fixmate/1.15.1+galaxy0 | 2022-09-01 |8.0
650 gff2bed1 | 2022-09-01 |8.0
651 toolshed.g2.bx.psu.edu/repos/devteam/principal_component_analysis/pca1/1.0.2 | 2022-09-01 |8.0
652 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.8.1+galaxy0 | 2022-09-01 |8.0
653 bed2gff1 | 2022-09-01 |8.0
654 toolshed.g2.bx.psu.edu/repos/iuc/breseq/breseq/0.35.5+galaxy1 | 2022-09-01 |8.0
655 toolshed.g2.bx.psu.edu/repos/iuc/mothur_count_seqs/mothur_count_seqs/1.39.5.0 | 2022-09-01 |8.0
656 toolshed.g2.bx.psu.edu/repos/devteam/fastx_artifacts_filter/cshl_fastx_artifacts_filter/1.0.1+galaxy0 | 2022-09-01 |8.0
657 toolshed.g2.bx.psu.edu/repos/peterjc/blastxml_to_top_descr/blastxml_to_top_descr/0.1.1 | 2022-09-01 |8.0
658 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_artifact_metrics/2.18.2.2 | 2022-09-01 |8.0
659 toolshed.g2.bx.psu.edu/repos/iuc/mothur_tree_shared/mothur_tree_shared/1.39.5.0 | 2022-09-01 |8.0
660 toolshed.g2.bx.psu.edu/repos/iuc/novoplasty/novoplasty/4.3.1+galaxy0 | 2022-09-01 |8.0
661 toolshed.g2.bx.psu.edu/repos/iuc/qiime_assign_taxonomy/qiime_assign_taxonomy/1.9.1.0 | 2022-09-01 |7.0
662 toolshed.g2.bx.psu.edu/repos/iuc/raxml/raxml/8.2.4+galaxy3 | 2022-09-01 |7.0
663 toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/4.1.1+galaxy0 | 2022-09-01 |7.0
664 toolshed.g2.bx.psu.edu/repos/iuc/export2graphlan/export2graphlan/0.20+galaxy0 | 2022-09-01 |7.0
665 toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0 | 2022-09-01 |7.0
666 toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbduk/bbtools_bbduk/1.0.0+galaxy3 | 2022-09-01 |7.0
667 toolshed.g2.bx.psu.edu/repos/iuc/trinity_abundance_estimates_to_matrix/trinity_abundance_estimates_to_matrix/2.9.1 | 2022-09-01 |7.0
668 toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_compound_convert/openbabel_compound_convert/3.1.1+galaxy0 | 2022-09-01 |7.0
669 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.6+galaxy2 | 2022-09-01 |7.0
670 toolshed.g2.bx.psu.edu/repos/devteam/fasta_filter_by_length/fasta_filter_by_length/1.2 | 2022-09-01 |7.0
671 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_sim/gmx_sim/2022+galaxy0 | 2022-09-01 |7.0
672 sra_source | 2022-09-01 |7.0
673 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.4.4.0 | 2022-09-01 |7.0
674 toolshed.g2.bx.psu.edu/repos/bgruening/augustus/augustus/3.4.0+galaxy1 | 2022-09-01 |7.0
675 toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_single/mothur_summary_single/1.39.5.2 | 2022-09-01 |7.0
676 toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2 | 2022-09-01 |7.0
677 toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_groups/mothur_get_groups/1.39.5.0 | 2022-09-01 |7.0
678 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.8.1+galaxy0 | 2022-09-01 |7.0
679 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/2.2.1 | 2022-09-01 |7.0
680 toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy0 | 2022-09-01 |7.0
681 toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond_makedb/2.0.15+galaxy0 | 2022-09-01 |7.0
682 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.9+galaxy1 | 2022-09-01 |7.0
683 toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy2 | 2022-09-01 |7.0
684 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_download/4.1.0 | 2022-09-01 |7.0
685 toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.0 | 2022-09-01 |7.0
686 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/nspdk_sparse/9.2.3 | 2022-09-01 |7.0
687 toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_otu/mothur_classify_otu/1.39.5.0 | 2022-09-01 |7.0
688 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/3.5.1.0.0 | 2022-09-01 |7.0
689 toolshed.g2.bx.psu.edu/repos/iuc/snp_sites/snp_sites/2.5.1+galaxy0 | 2022-09-01 |7.0
690 CONVERTER_biom | 2022-09-01 |7.0
691 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multicovtbed/2.30.0 | 2022-09-01 |7.0
692 toolshed.g2.bx.psu.edu/repos/iuc/trinity_run_de_analysis/trinity_run_de_analysis/2.9.1 | 2022-09-01 |7.0
693 toolshed.g2.bx.psu.edu/repos/iuc/shasta/shasta/0.6.0+galaxy0 | 2022-09-01 |7.0
694 toolshed.g2.bx.psu.edu/repos/iuc/ensembl_vep/ensembl_vep/106.1+galaxy1 | 2022-09-01 |6.0
695 toolshed.g2.bx.psu.edu/repos/devteam/kraken_translate/kraken-translate/1.3.1 | 2022-09-01 |6.0
696 toolshed.g2.bx.psu.edu/repos/iuc/gecko/gecko/1.2 | 2022-09-01 |6.0
697 __FILTER_EMPTY_DATASETS__ | 2022-09-01 |6.0
698 toolshed.g2.bx.psu.edu/repos/iuc/mothur_dist_shared/mothur_dist_shared/1.39.5.0 | 2022-09-01 |6.0
699 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/1.3.6+galaxy0 | 2022-09-01 |6.0
700 __RELABEL_FROM_FILE__ | 2022-09-01 |6.0
701 toolshed.g2.bx.psu.edu/repos/iuc/metaphlan/metaphlan/3.0.9+galaxy0 | 2022-09-01 |6.0
702 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/3.4+galaxy0 | 2022-09-01 |6.0
703 toolshed.g2.bx.psu.edu/repos/bgruening/interproscan5/interproscan/5.0.0 | 2022-09-01 |6.0
704 toolshed.g2.bx.psu.edu/repos/devteam/velvet/velveth/1.2.10.3 | 2022-09-01 |6.0
705 toolshed.g2.bx.psu.edu/repos/iuc/cat_contigs/cat_contigs/5.0.3.1 | 2022-09-01 |6.0
706 toolshed.g2.bx.psu.edu/repos/iuc/bp_genbank2gff3/bp_genbank2gff3/1.1 | 2022-09-01 |6.0
707 toolshed.g2.bx.psu.edu/repos/iuc/humann_regroup_table/humann_regroup_table/3.0.0+galaxy1 | 2022-09-01 |6.0
708 toolshed.g2.bx.psu.edu/repos/iuc/trinity_define_clusters_by_cutting_tree/trinity_define_clusters_by_cutting_tree/2.8.4+galaxy1 | 2022-09-01 |6.0
709 toolshed.g2.bx.psu.edu/repos/iuc/anndata_export/anndata_export/0.7.5+galaxy1 | 2022-09-01 |6.0
710 toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.4.1 | 2022-09-01 |6.0
711 CONVERTER_bed_to_gff_0 | 2022-09-01 |6.0
712 toolshed.g2.bx.psu.edu/repos/rnateam/mafft/rbc_mafft/7.489+galaxy0 | 2022-09-01 |6.0
713 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_tableviewer/0.69.8+galaxy9 | 2022-09-01 |6.0
714 toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.6.1 | 2022-09-01 |6.0
715 toolshed.g2.bx.psu.edu/repos/bgruening/unique/bg_uniq/0.3 | 2022-09-01 |6.0
716 toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.6.0 | 2022-09-01 |6.0
717 toolshed.g2.bx.psu.edu/repos/iuc/fgsea/fgsea/1.8.0+galaxy1 | 2022-09-01 |6.0
718 CONVERTER_fasta_to_len | 2022-09-01 |6.0
719 toolshed.g2.bx.psu.edu/repos/iuc/humann_rename_table/humann_rename_table/3.0.0+galaxy1 | 2022-09-01 |6.0
720 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/3.6+galaxy0 | 2022-09-01 |6.0
721 toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant_pipeline/medaka_variant_pipeline/1.4.4+galaxy1 | 2022-09-01 |6.0
722 toolshed.g2.bx.psu.edu/repos/devteam/vcfallelicprimitives/vcfallelicprimitives/1.0.0_rc3+galaxy0 | 2022-09-01 |6.0
723 toolshed.g2.bx.psu.edu/repos/iuc/snpfreqplot/snpfreqplot/1.0+galaxy3 | 2022-09-01 |6.0
724 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy1 | 2022-09-01 |6.0
725 toolshed.g2.bx.psu.edu/repos/iuc/humann_split_stratified_table/humann_split_stratified_table/3.0.0+galaxy1 | 2022-09-01 |6.0
726 toolshed.g2.bx.psu.edu/repos/iuc/spades_metaviralspades/spades_metaviralspades/3.15.4+galaxy2 | 2022-09-01 |6.0
727 toolshed.g2.bx.psu.edu/repos/iuc/metabat2_jgi_summarize_bam_contig_depths/metabat2_jgi_summarize_bam_contig_depths/2.15+galaxy2 | 2022-09-01 |6.0
728 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectRnaSeqMetrics/2.18.2.2 | 2022-09-01 |6.0
729 toolshed.g2.bx.psu.edu/repos/iuc/enasearch_retrieve_data/enasearch_retrieve_data/0.1.1.0 | 2022-09-01 |6.0
730 toolshed.g2.bx.psu.edu/repos/iuc/qiime_make_phylogeny/qiime_make_phylogeny/1.9.1.0 | 2022-09-01 |6.0
731 toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.5.1 | 2022-09-01 |6.0
732 toolshed.g2.bx.psu.edu/repos/iuc/arriba/arriba/2.3.0+galaxy0 | 2022-09-01 |6.0
733 toolshed.g2.bx.psu.edu/repos/devteam/vcf2tsv/vcf2tsv/1.0.0_rc1+galaxy0 | 2022-09-01 |6.0
734 toolshed.g2.bx.psu.edu/repos/devteam/get_flanks/get_flanks1/1.0.0 | 2022-09-01 |6.0
735 toolshed.g2.bx.psu.edu/repos/devteam/vcfvcfintersect/vcfvcfintersect/1.0.0_rc1+galaxy0 | 2022-09-01 |6.0
736 toolshed.g2.bx.psu.edu/repos/iuc/humann_unpack_pathways/humann_unpack_pathways/3.0.0+galaxy1 | 2022-09-01 |6.0
737 toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.2 | 2022-09-01 |6.0
738 CONVERTER_wig_to_bigwig | 2022-09-01 |6.0
739 toolshed.g2.bx.psu.edu/repos/iuc/aldex2/aldex2/1.26.0+galaxy0 | 2022-09-01 |6.0
740 toolshed.g2.bx.psu.edu/repos/iuc/mitos/mitos/1.0.5+galaxy1 | 2022-09-01 |6.0
741 toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/4.1.2+galaxy0 | 2022-09-01 |6.0
742 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.8.1+galaxy0 | 2022-09-01 |6.0
743 toolshed.g2.bx.psu.edu/repos/iuc/trycycler_subsample/trycycler_subsample/0.5.3 | 2022-09-01 |5.0
744 toolshed.g2.bx.psu.edu/repos/ecology/ecology_link_between_var/ecology_link_between_var/0.0.0 | 2022-09-01 |5.0
745 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.8+galaxy0 | 2022-09-01 |5.0
746 toolshed.g2.bx.psu.edu/repos/iuc/coverm_genome/coverm_genome/0.2.1+galaxy0 | 2022-09-01 |5.0
747 toolshed.g2.bx.psu.edu/repos/bgruening/plotly_regression_performance_plots/plotly_regression_performance_plots/0.1 | 2022-09-01 |5.0
748 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.8.4 | 2022-09-01 |5.0
749 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_energy/gmx_energy/2022+galaxy1 | 2022-09-01 |5.0
750 toolshed.g2.bx.psu.edu/repos/iuc/qiime_pick_open_reference_otus/qiime_pick_open_reference_otus/1.9.1.0 | 2022-09-01 |5.0
751 toolshed.g2.bx.psu.edu/repos/ebi-gxa/retrieve_scxa/retrieve_scxa/v0.0.2+galaxy2 | 2022-09-01 |5.0
752 toolshed.g2.bx.psu.edu/repos/iuc/qiime_align_seqs/qiime_align_seqs/1.9.1.0 | 2022-09-01 |5.0
753 toolshed.g2.bx.psu.edu/repos/iuc/mlst/mlst/2.19.0 | 2022-09-01 |5.0
754 toolshed.g2.bx.psu.edu/repos/iuc/gemini_actionable_mutations/gemini_actionable_mutations/0.20.1 | 2022-09-01 |5.0
755 toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.2 | 2022-09-01 |5.0
756 toolshed.g2.bx.psu.edu/repos/iuc/gfa_to_fa/gfa_to_fa/0.1.2 | 2022-09-01 |5.0
757 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_map/2.30.0.3 | 2022-09-01 |5.0
758 toolshed.g2.bx.psu.edu/repos/iuc/column_remove_by_header/column_remove_by_header/1.0 | 2022-09-01 |5.0
759 toolshed.g2.bx.psu.edu/repos/iuc/intervene/intervene_upset/0.6.5 | 2022-09-01 |5.0
760 toolshed.g2.bx.psu.edu/repos/devteam/megablast_wrapper/megablast_wrapper/1.2.0 | 2022-09-01 |5.0
761 toolshed.g2.bx.psu.edu/repos/iuc/mothur_dist_seqs/mothur_dist_seqs/1.39.5.0 | 2022-09-01 |5.0
762 omicsdi | 2022-09-01 |5.0
763 __ZIP_COLLECTION__ | 2022-09-01 |5.0
764 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/get_species_taxids/2.10.1+galaxy2 | 2022-09-01 |5.0
765 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_mergebed/2.30.0 | 2022-09-01 |5.0
766 toolshed.g2.bx.psu.edu/repos/iuc/gemini_annotate/gemini_annotate/0.20.1+galaxy2 | 2022-09-01 |5.0
767 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_multijoin_tool/1.1.1 | 2022-09-01 |5.0
768 toolshed.g2.bx.psu.edu/repos/iuc/trinity_gene_to_trans_map/trinity_gene_to_trans_map/2.9.1 | 2022-09-01 |5.0
769 toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.11 | 2022-09-01 |5.0
770 CONVERTER_len_to_linecount | 2022-09-01 |5.0
771 toolshed.g2.bx.psu.edu/repos/iuc/describe_samples/describe_samples/2.8.4 | 2022-09-01 |5.0
772 toolshed.g2.bx.psu.edu/repos/iuc/dada2_assigntaxonomyaddspecies/dada2_assignTaxonomyAddspecies/1.20+galaxy0 | 2022-09-01 |5.0
773 toolshed.g2.bx.psu.edu/repos/iuc/minia/minia/3.2.6 | 2022-09-01 |5.0
774 toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_lineage/mothur_remove_lineage/1.39.5.0 | 2022-09-01 |5.0
775 toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.1 | 2022-09-01 |5.0
776 toolshed.g2.bx.psu.edu/repos/devteam/fastx_nucleotides_distribution/cshl_fastx_nucleotides_distribution/1.0.1 | 2022-09-01 |5.0
777 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca/2.3.4 | 2022-09-01 |5.0
778 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_uniq_tool/1.1.1 | 2022-09-01 |5.0
779 toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mergefa/1.3.1 | 2022-09-01 |5.0
780 toolshed.g2.bx.psu.edu/repos/iuc/orthofinder_onlygroups/orthofinder_onlygroups/2.5.4+galaxy1 | 2022-09-01 |5.0
781 toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/species_tree_generator/3.0.0b35 | 2022-09-01 |5.0
782 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_gstacks/stacks2_gstacks/2.55+galaxy4 | 2022-09-01 |5.0
783 toolshed.g2.bx.psu.edu/repos/devteam/kraken_report/kraken-mpa-report/1.2.4 | 2022-09-01 |5.0
784 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_pathway_image/1.1.0 | 2022-09-01 |5.0
785 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_databases/4.3+T.galaxy2 | 2022-09-01 |5.0
786 interactive_tool_ml_jupyter_notebook | 2022-09-01 |5.0
787 toolshed.g2.bx.psu.edu/repos/iuc/proteinortho_grab_proteins/proteinortho_grab_proteins/6.0.32+galaxy0 | 2022-09-01 |5.0
788 toolshed.g2.bx.psu.edu/repos/jjohnson/rsem/rsem_prepare_reference/1.1.17 | 2022-09-01 |5.0
789 toolshed.g2.bx.psu.edu/repos/peterjc/blast2go/blast2go/0.0.9 | 2022-09-01 |5.0
790 toolshed.g2.bx.psu.edu/repos/iuc/meme_meme/meme_meme/5.4.1+galaxy0 | 2022-09-01 |4.0
791 toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster/mothur_cluster/1.39.5.0 | 2022-09-01 |4.0
792 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_ustacks/stacks2_ustacks/2.55+galaxy4 | 2022-09-01 |4.0
793 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_coverage/deeptools_plot_coverage/3.5.1.0.0 | 2022-09-01 |4.0
794 toolshed.g2.bx.psu.edu/repos/iuc/bamtools_split_mapped/bamtools_split_mapped/2.5.1+galaxy0 | 2022-09-01 |4.0
795 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_text_file_with_recurring_lines/1.1.0 | 2022-09-01 |4.0
796 CONVERTER_fasta_to_fai | 2022-09-01 |4.0
797 __IMPORT_HISTORY__ | 2022-09-01 |4.0
798 toolshed.g2.bx.psu.edu/repos/rnateam/ribotaper/ribotaper_create_metaplots/1.3.1a+galaxy2 | 2022-09-01 |4.0
799 toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_joiner/fastq_paired_end_joiner/2.0.1.1+galaxy0 | 2022-09-01 |4.0
800 toolshed.g2.bx.psu.edu/repos/iuc/funannotate_predict/funannotate_predict/1.8.9+galaxy2 | 2022-09-01 |4.0
801 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17 | 2022-09-01 |4.0
802 toolshed.g2.bx.psu.edu/repos/iuc/mash/mash_screen/2.3+galaxy3 | 2022-09-01 |4.0
803 toolshed.g2.bx.psu.edu/repos/iuc/length_and_gc_content/length_and_gc_content/0.1.2 | 2022-09-01 |4.0
804 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_maskfastabed/2.30.0 | 2022-09-01 |4.0
805 toolshed.g2.bx.psu.edu/repos/iuc/mothur_sub_sample/mothur_sub_sample/1.39.5.0 | 2022-09-01 |4.0
806 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_NormalizeFasta/2.18.2.1 | 2022-09-01 |4.0
807 toolshed.g2.bx.psu.edu/repos/iuc/mothur_rarefaction_single/mothur_rarefaction_single/1.39.5.0 | 2022-09-01 |4.0
808 toolshed.g2.bx.psu.edu/repos/lecorguille/msnbase_readmsdata/msnbase_readmsdata/2.8.2.1 | 2022-09-01 |4.0
809 toolshed.g2.bx.psu.edu/repos/iuc/trycycler_reconcile_msa/trycycler_reconcile_msa/0.5.3 | 2022-09-01 |4.0
810 toolshed.g2.bx.psu.edu/repos/ecology/vigiechiro_bilanenrichipf/vigiechiro_bilanenrichipf/0.1.1 | 2022-09-01 |4.0
811 toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.11+galaxy2 | 2022-09-01 |4.0
812 CONVERTER_interval_to_bed6_0 | 2022-09-01 |4.0
813 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_esearch/ncbi_eutils_esearch/1.2 | 2022-09-01 |4.0
814 toolshed.g2.bx.psu.edu/repos/yhoogstrate/segmentation_fold/smf_utils_fix-fasta-headers/smf-v1.7-0_utils-v2.1.1-1 | 2022-09-01 |4.0
815 toolshed.g2.bx.psu.edu/repos/devteam/vcf_filter/vcf_filter/1.0.0 | 2022-09-01 |4.0
816 toolshed.g2.bx.psu.edu/repos/ebi-gxa/ucsc_cell_browser/ucsc_cell_browser/1.0.0+galaxy0 | 2022-09-01 |4.0
817 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy7 | 2022-09-01 |4.0
818 toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/0.9.2 | 2022-09-01 |4.0
819 toolshed.g2.bx.psu.edu/repos/bgruening/wtdbg/wtdbg/1.2.8.1 | 2022-09-01 |4.0
820 toolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.2.4 | 2022-09-01 |4.0
821 toolshed.g2.bx.psu.edu/repos/iuc/transdecoder/transdecoder/5.5.0+galaxy2 | 2022-09-01 |4.0
822 toolshed.g2.bx.psu.edu/repos/ecology/spocc_occ/spocc_occ/0.9.0 | 2022-09-01 |4.0
823 toolshed.g2.bx.psu.edu/repos/iuc/varscan_mpileup/varscan_mpileup/2.4.3.0 | 2022-09-01 |4.0
824 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_plugin_split_vep/bcftools_plugin_split_vep/1.10 | 2022-09-01 |4.0
825 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_ensemble/sklearn_ensemble/1.0.8.1 | 2022-09-01 |4.0
826 toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.2 | 2022-09-01 |4.0
827 toolshed.g2.bx.psu.edu/repos/jjohnson/rsem/rsem_calculate_expression/1.1.17 | 2022-09-01 |4.0
828 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap/ggplot2_heatmap/3.3.5+galaxy0 | 2022-09-01 |4.0
829 toolshed.g2.bx.psu.edu/repos/devteam/fasta_compute_length/fasta_compute_length/1.0.3 | 2022-09-01 |4.0
830 toolshed.g2.bx.psu.edu/repos/iuc/gemini_pathways/gemini_pathways/0.20.1 | 2022-09-01 |4.0
831 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_em/gmx_em/2022+galaxy0 | 2022-09-01 |4.0
832 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/tmhmm2/0.0.17 | 2022-09-01 |4.0
833 toolshed.g2.bx.psu.edu/repos/bgruening/crispr_recognition_tool/crispr_recognition_tool/1.2.0 | 2022-09-01 |4.0
834 interactive_tool_pangeo_notebook | 2022-09-01 |4.0
835 toolshed.g2.bx.psu.edu/repos/ecology/vigiechiro_idvalid/vigiechiro_idvalid/0.1.1 | 2022-09-01 |4.0
836 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_rmsf/bio3d_rmsf/2.3.4 | 2022-09-01 |4.0
837 CONVERTER_Bam_Bai_0 | 2022-09-01 |4.0
838 toolshed.g2.bx.psu.edu/repos/iuc/nextclade/nextclade/1.5.1+galaxy0 | 2022-09-01 |4.0
839 export_remote | 2022-09-01 |4.0
840 toolshed.g2.bx.psu.edu/repos/ecology/vigiechiro_idcorrect_2ndlayer/vigiechiro_idcorrect_2ndlayer/0.1.1 | 2022-09-01 |4.0
841 toolshed.g2.bx.psu.edu/repos/yhoogstrate/segmentation_fold/smf_utils_add-read-counts/smf-v1.7-0_utils-v2.1.1-3 | 2022-09-01 |4.0
842 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.6+galaxy0 | 2022-09-01 |4.0
843 toolshed.g2.bx.psu.edu/repos/iuc/qiime_alpha_diversity/qiime_alpha_diversity/1.9.1.0 | 2022-09-01 |4.0
844 Summary_Statistics1 | 2022-09-01 |4.0
845 toolshed.g2.bx.psu.edu/repos/iuc/varscan_somatic/varscan_somatic/2.4.3.6 | 2022-09-01 |4.0
846 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_svm_classifier/sklearn_svm_classifier/1.0.8.1 | 2022-09-01 |4.0
847 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_BamIndexStats/1.56.0 | 2022-09-01 |4.0
848 toolshed.g2.bx.psu.edu/repos/devteam/samtools_slice_bam/samtools_slice_bam/0.0.1 | 2022-09-01 |4.0
849 toolshed.g2.bx.psu.edu/repos/iuc/mlst/mlst/2.16.1 | 2022-09-01 |4.0
850 toolshed.g2.bx.psu.edu/repos/iuc/bioext_bealign/bioext_bealign/0.20.4+galaxy0 | 2022-09-01 |4.0
851 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/bamleftalign/1.1.0.46-0 | 2022-09-01 |4.0
852 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/3.4.4.0 | 2022-09-01 |4.0
853 toolshed.g2.bx.psu.edu/repos/iuc/length_and_gc_content/length_and_gc_content/0.1.1 | 2022-09-01 |4.0
854 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_retcor/abims_xcms_retcor/3.4.4.1 | 2022-09-01 |4.0
855 toolshed.g2.bx.psu.edu/repos/iuc/funannotate_sort/funannotate_sort/1.8.9+galaxy2 | 2022-09-01 |4.0
856 toolshed.g2.bx.psu.edu/repos/ebi-gxa/retrieve_scxa/retrieve_scxa/v0.0.1+galaxy1 | 2022-09-01 |3.0
857 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_solvate/gmx_solvate/2022+galaxy0 | 2022-09-01 |3.0
858 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_sim/gmx_sim/2020.4+galaxy1 | 2022-09-01 |3.0
859 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.3.2+galaxy0 | 2022-09-01 |3.0
860 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_biom/mothur_make_biom/1.39.5.0 | 2022-09-01 |3.0
861 toolshed.g2.bx.psu.edu/repos/bgruening/create_tool_recommendation_model/create_tool_recommendation_model/0.0.1 | 2022-09-01 |3.0
862 toolshed.g2.bx.psu.edu/repos/iuc/mothur_count_groups/mothur_count_groups/1.39.5.0 | 2022-09-01 |3.0
863 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: geecee41/5.0.0 | 2022-09-01 |3.0
864 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpsift_vartype/4.3.1 | 2022-09-01 |3.0
865 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_annotatebed/2.30.0 | 2022-09-01 |3.0
866 toolshed.g2.bx.psu.edu/repos/chemteam/vmd_hbonds/vmd_hbonds/1.9.3 | 2022-09-01 |3.0
867 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.3.1 | 2022-09-01 |3.0
868 toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.6 | 2022-09-01 |3.0
869 toolshed.g2.bx.psu.edu/repos/iuc/data_manager_interproscan/data_manager_interproscan/0.0.2 | 2022-09-01 |3.0
870 hgv_linkToGProfile | 2022-09-01 |3.0
871 toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fastq/tabular_to_fastq/1.0.0 | 2022-09-01 |3.0
872 toolshed.g2.bx.psu.edu/repos/iuc/abricate/abricate_list/1.0.1 | 2022-09-01 |3.0
873 toolshed.g2.bx.psu.edu/repos/ecology/ecology_presence_abs_abund/ecology_presence_abs_abund/0.0.0 | 2022-09-01 |3.0
874 toolshed.g2.bx.psu.edu/repos/iuc/barrnap/barrnap/1.2.2 | 2022-09-01 |3.0
875 toolshed.g2.bx.psu.edu/repos/ebi-gxa/ucsc_cell_browser/ucsc_cell_browser/0.5.21+galaxy0 | 2022-09-01 |3.0
876 toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.1.1+galaxy0 | 2022-09-01 |3.0
877 toolshed.g2.bx.psu.edu/repos/iuc/cooc_tabmut/cooc_tabmut/0.2+galaxy0 | 2022-09-01 |3.0
878 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_normalise_data/scanpy_normalise_data/1.3.2+galaxy1 | 2022-09-01 |3.0
879 toolshed.g2.bx.psu.edu/repos/iuc/deepvariant/deepvariant/1.4.0+galaxy0 | 2022-09-01 |3.0
880 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.12 | 2022-09-01 |3.0
881 Show tail1 | 2022-09-01 |3.0
882 toolshed.g2.bx.psu.edu/repos/iuc/metabat2/metabat2/2.15+galaxy2 | 2022-09-01 |3.0
883 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_receptor/prepare_receptor/1.5.7+galaxy0 | 2022-09-01 |3.0
884 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_editconf/gmx_editconf/2022+galaxy0 | 2022-09-01 |3.0
885 toolshed.g2.bx.psu.edu/repos/iuc/limma_voom/limma_voom/3.48.0+galaxy1 | 2022-09-01 |3.0
886 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_read_NVC/2.6.4 | 2022-09-01 |3.0
887 toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_groups/mothur_remove_groups/1.39.5.0 | 2022-09-01 |3.0
888 toolshed.g2.bx.psu.edu/repos/nml/mob_suite/mob_recon/3.0.3+galaxy0 | 2022-09-01 |3.0
889 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.3.2+galaxy1 | 2022-09-01 |3.0
890 toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.4.4+galaxy0 | 2022-09-01 |3.0
891 toolshed.g2.bx.psu.edu/repos/bgruening/chembl/chembl/0.10.1+galaxy4 | 2022-09-01 |3.0
892 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1 | 2022-09-01 |3.0
893 toolshed.g2.bx.psu.edu/repos/fgiacomoni/hmdb_ms_search/wsdl_hmdb/1.6.1 | 2022-09-01 |3.0
894 toolshed.g2.bx.psu.edu/repos/devteam/cuffmerge/cuffmerge/2.2.1.1 | 2022-09-01 |3.0
895 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_compare/deeptools_bam_compare/3.3.2.0.0 | 2022-09-01 |3.0
896 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix_operations/deeptools_compute_matrix_operations/3.5.1.0.0 | 2022-09-01 |3.0
897 toolshed.g2.bx.psu.edu/repos/devteam/vcfhethom/vcfhethom/1.0.0_rc1+galaxy0 | 2022-09-01 |3.0
898 toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.3.5 | 2022-09-01 |3.0
899 toolshed.g2.bx.psu.edu/repos/peterjc/mummer/mummerplot_wrapper/0.0.7 | 2022-09-01 |3.0
900 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_aln_to_links/0.69.8+galaxy9 | 2022-09-01 |3.0
901 toolshed.g2.bx.psu.edu/repos/gbcs-embl-heidelberg/je_demultiplex/je_demultiplex/1.2.1 | 2022-09-01 |3.0
902 Paste1 | 2022-09-01 |3.0
903 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.8.1+galaxy1 | 2022-09-01 |3.0
904 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.3.2+galaxy1 | 2022-09-01 |3.0
905 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.3.2+galaxy1 | 2022-09-01 |3.0
906 toolshed.g2.bx.psu.edu/repos/iuc/pick_open_reference_otus/pick_open_reference_otus/1.9.1.0 | 2022-09-01 |3.0
907 toolshed.g2.bx.psu.edu/repos/iuc/homer_gtf_to_annotations/homer_gtf_to_annotations/4.11+galaxy0 | 2022-09-01 |3.0
908 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_tsv2bam/stacks2_tsv2bam/2.55+galaxy2 | 2022-09-01 |3.0
909 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_violin/ggplot2_violin/3.3.5+galaxy0 | 2022-09-01 |3.0
910 toolshed.g2.bx.psu.edu/repos/bgruening/add_line_to_file/add_line_to_file/0.1.0 | 2022-09-01 |3.0
911 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.3.2+galaxy1 | 2022-09-01 |3.0
912 toolshed.g2.bx.psu.edu/repos/iuc/mageck_mle/mageck_mle/0.5.8.1 | 2022-09-01 |3.0
913 toolshed.g2.bx.psu.edu/repos/iuc/humann_join_tables/humann_join_tables/3.0.0+galaxy1 | 2022-09-01 |3.0
914 toolshed.g2.bx.psu.edu/repos/iuc/checkm_plot/checkm_plot/1.2.0+galaxy0 | 2022-09-01 |3.0
915 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_umap/scanpy_run_umap/1.8.1+galaxy0 | 2022-09-01 |3.0
916 toolshed.g2.bx.psu.edu/repos/devteam/scatterplot/scatterplot_rpy/1.0.3 | 2022-09-01 |3.0
917 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_download/4.3+T.galaxy1 | 2022-09-01 |3.0
918 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.6+galaxy1 | 2022-09-01 |3.0
919 toolshed.g2.bx.psu.edu/repos/iuc/homer_annotatepeaks/homer_annotatePeaks/4.11+galaxy2 | 2022-09-01 |3.0
920 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_mergebedgraph/2.19.0 | 2022-09-01 |3.0
921 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_tile/0.69.8+galaxy9 | 2022-09-01 |3.0
922 toolshed.g2.bx.psu.edu/repos/iuc/spades_rnaviralspades/spades_rnaviralspades/3.15.4+galaxy2 | 2022-09-01 |3.0
923 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.3.2+galaxy1 | 2022-09-01 |3.0
924 toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_variants/nanopolish_variants/0.11.1 | 2022-09-01 |3.0
925 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_sstacks/stacks2_sstacks/2.55+galaxy4 | 2022-09-01 |3.0
926 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.8.1+galaxy1 | 2022-09-01 |3.0
927 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_convert_to_vcf/bcftools_convert_to_vcf/1.10 | 2022-09-01 |3.0
928 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.8.1+galaxy0 | 2022-09-01 |3.0
929 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.3.2+galaxy1 | 2022-09-01 |3.0
930 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_umap/scanpy_run_umap/1.3.2+galaxy1 | 2022-09-01 |3.0
931 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdifferentialtad/hicexplorer_hicdifferentialtad/3.6+galaxy0 | 2022-09-01 |3.0
932 toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0.1 | 2022-09-01 |3.0
933 toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_variants/nanopolish_variants/0.1.0 | 2022-09-01 |3.0
934 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_cluster_kegg/1.0.0 | 2022-09-01 |3.0
935 toolshed.g2.bx.psu.edu/repos/bgruening/fpocket/fpocket/4.0.0+galaxy0 | 2022-09-01 |3.0
936 toolshed.g2.bx.psu.edu/repos/ebi-gxa/ucsc_cell_browser/ucsc_cell_browser/0.7.10+galaxy0 | 2022-09-01 |3.0
937 toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.5.1 | 2022-09-01 |3.0
938 toolshed.g2.bx.psu.edu/repos/iuc/coverm_contig/coverm_contig/0.2.1 | 2022-09-01 |3.0
939 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/3.6+galaxy0 | 2022-09-01 |3.0
940 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_download/4.3+T.galaxy2 | 2022-09-01 |3.0
941 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_read_10x/scanpy_read_10x/1.3.2+galaxy0 | 2022-09-01 |3.0
942 toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_tree/mothur_classify_tree/1.39.5.0 | 2022-09-01 |3.0
943 toolshed.g2.bx.psu.edu/repos/bgruening/trna_prediction/trnascan/0.4 | 2022-09-01 |3.0
944 toolshed.g2.bx.psu.edu/repos/rnateam/segemehl/segemehl/0.2.0.3 | 2022-09-01 |3.0
945 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: revseq82/5.0.0 | 2022-09-01 |3.0
946 toolshed.g2.bx.psu.edu/repos/iuc/kraken_taxonomy_report/kraken_taxonomy_report/0.0.3 | 2022-09-01 |3.0
947 toolshed.g2.bx.psu.edu/repos/galaxyp/custom_pro_db/custom_pro_db/1.22.0 | 2022-09-01 |3.0
948 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_normalise_data/scanpy_normalise_data/1.8.1+galaxy0 | 2022-09-01 |3.0
949 toolshed.g2.bx.psu.edu/repos/iuc/pathview/pathview/1.24.0+galaxy2 | 2022-09-01 |3.0
950 toolshed.g2.bx.psu.edu/repos/devteam/samtools_phase/samtools_phase/2.0.2 | 2022-09-01 |3.0
951 toolshed.g2.bx.psu.edu/repos/iuc/gubbins/gubbins/3.2.1+galaxy0 | 2022-09-01 |3.0
952 toolshed.g2.bx.psu.edu/repos/iuc/qiime_pick_otus/qiime_pick_otus/1.9.1.0 | 2022-09-01 |3.0
953 liftOver1 | 2022-09-01 |3.0
954 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.8.1+galaxy0 | 2022-09-01 |3.0
955 toolshed.g2.bx.psu.edu/repos/bebatut/cdhit/cd_hit_est/1.3 | 2022-09-01 |3.0
956 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_genes/scanpy_filter_genes/1.3.2+galaxy1 | 2022-09-01 |3.0
957 gff_to_sequence | 2022-09-01 |3.0
958 toolshed.g2.bx.psu.edu/repos/iuc/salsa/salsa/2.3+galaxy3 | 2022-09-01 |3.0
959 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_genes/scanpy_filter_genes/1.8.1+galaxy0 | 2022-09-01 |3.0
960 toolshed.g2.bx.psu.edu/repos/iuc/raxml/raxml/8.2.4+galaxy2 | 2022-09-01 |3.0
961 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_cells/scanpy_filter_cells/1.3.2+galaxy0 | 2022-09-01 |3.0
962 toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.1+galaxy0 | 2022-09-01 |3.0
963 toolshed.g2.bx.psu.edu/repos/devteam/cuffquant/cuffquant/2.2.1.1 | 2022-09-01 |3.0
964 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/signalp3/0.0.20 | 2022-09-01 |2.0
965 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_editconf/gmx_editconf/2020.4+galaxy0 | 2022-09-01 |2.0
966 toolshed.g2.bx.psu.edu/repos/iuc/funannotate_annotate/funannotate_annotate/1.8.9+galaxy2 | 2022-09-01 |2.0
967 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_cstacks/stacks2_cstacks/2.55+galaxy2 | 2022-09-01 |2.0
968 toolshed.g2.bx.psu.edu/repos/rnateam/rcas/rcas/1.5.4 | 2022-09-01 |2.0
969 toolshed.g2.bx.psu.edu/repos/bgruening/minced/minced/0.1.5 | 2022-09-01 |2.0
970 toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.36.5 | 2022-09-01 |2.0
971 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_rmInfo/4.3+t.galaxy0 | 2022-09-01 |2.0
972 toolshed.g2.bx.psu.edu/repos/iuc/qiime_upgma_cluster/qiime_upgma_cluster/1.9.1.0 | 2022-09-01 |2.0
973 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_new_oscar/1.0.0 | 2022-09-01 |2.0
974 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_ustacks/stacks2_ustacks/2.55+galaxy3 | 2022-09-01 |2.0
975 toolshed.g2.bx.psu.edu/repos/devteam/vcfgenotypes/vcfgenotypes/1.0.0_rc1+galaxy0 | 2022-09-01 |2.0
976 toolshed.g2.bx.psu.edu/repos/iuc/qiime_count_seqs/qiime_count_seqs/1.9.1.0 | 2022-09-01 |2.0
977 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tac/1.1.0 | 2022-09-01 |2.0
978 toolshed.g2.bx.psu.edu/repos/iuc/mummer_mummerplot/mummer_mummerplot/4.0.0rc1+galaxy2 | 2022-09-01 |2.0
979 toolshed.g2.bx.psu.edu/repos/blankenberg/naive_variant_caller/naive_variant_caller/0.0.3 | 2022-09-01 |2.0
980 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_cstacks/stacks2_cstacks/2.55+galaxy4 | 2022-09-01 |2.0
981 toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.14+galaxy0 | 2022-09-01 |2.0
982 toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/Batch_correction/2.1.2 | 2022-09-01 |2.0
983 Extract_features1 | 2022-09-01 |2.0
984 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy10 | 2022-09-01 |2.0
985 toolshed.g2.bx.psu.edu/repos/iuc/deepvariant/deepvariant/1.2.0+galaxy1 | 2022-09-01 |2.0
986 toolshed.g2.bx.psu.edu/repos/bgruening/diffbind/diffbind/2.10.0 | 2022-09-01 |2.0
987 toolshed.g2.bx.psu.edu/repos/ecology/ecology_beta_diversity/ecology_beta_diversity/0.0.0 | 2022-09-01 |2.0
988 toolshed.g2.bx.psu.edu/repos/iuc/hyphy_annotate/hyphy_annotate/2.5.36+galaxy0 | 2022-09-01 |2.0
989 __EXPORT_HISTORY_TO_URI__ | 2022-09-01 |2.0
990 toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnaplot/viennarna_rnaplot/2.2.10.0 | 2022-09-01 |2.0
991 toolshed.g2.bx.psu.edu/repos/iuc/binning_refiner/bin_refiner/1.4.3+galaxy1 | 2022-09-01 |2.0
992 toolshed.g2.bx.psu.edu/repos/iuc/vcfanno/vcfanno/0.3.3+galaxy0 | 2022-09-01 |2.0
993 toolshed.g2.bx.psu.edu/repos/nml/spades/spades/1.2 | 2022-09-01 |2.0
994 toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus_pipeline/medaka_consensus_pipeline/1.4.4+galaxy0 | 2022-09-01 |2.0
995 interactive_tool_simtext_app | 2022-09-01 |2.0
996 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.6 | 2022-09-01 |2.0
997 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/2.10.1+galaxy2 | 2022-09-01 |2.0
998 toolshed.g2.bx.psu.edu/repos/peterjc/venn_list/venn_list/0.1.1 | 2022-09-01 |2.0
999 toolshed.g2.bx.psu.edu/repos/nick/allele_counts/allele_counts_1/1.2 | 2022-09-01 |2.0
1000 toolshed.g2.bx.psu.edu/repos/iuc/ucsc_fasplit/fasplit/377 | 2022-09-01 |2.0
1001 toolshed.g2.bx.psu.edu/repos/devteam/weblogo3/rgweblogo3/3.5.0 | 2022-09-01 |2.0
1002 __IMPORT_HISTORY__ | 2020-09-01 |15.0
1003 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_box/prepare_box/2020.03.4+galaxy0 | 2020-09-01 |15.0
1004 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgdiff/2.1.1.20160309.1 | 2020-09-01 |15.0
1005 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_violin/ggplot2_violin/2.2.1+galaxy0 | 2020-09-01 |15.0
1006 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_targetedfileconverter/TargetedFileConverter/2.5+galaxy0 | 2020-09-01 |15.0
1007 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/rxlr_motifs/0.0.14 | 2020-09-01 |15.0
1008 toolshed.g2.bx.psu.edu/repos/iuc/metaphlan_hclust_heatmap/metaphlan_hclust_heatmap/2.6.0.0 | 2020-09-01 |15.0
1009 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.6.0+galaxy0 | 2020-09-01 |15.0
1010 toolshed.g2.bx.psu.edu/repos/devteam/vcftools_merge/vcftools_merge/0.1.1 | 2020-09-01 |15.0
1011 toolshed.g2.bx.psu.edu/repos/devteam/fastq_manipulation/fastq_manipulation/1.1.5 | 2020-09-01 |15.0
1012 toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.3.1 | 2020-09-01 |15.0
1013 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.0.2.0 | 2020-09-01 |15.0
1014 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.4.3+galaxy0 | 2020-09-01 |15.0
1015 liftOver1 | 2020-09-01 |15.0
1016 toolshed.g2.bx.psu.edu/repos/iuc/raceid_clustering/raceid_clustering/3.1 | 2020-09-01 |15.0
1017 toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_methylation_extractor/0.22.1 | 2020-09-01 |15.0
1018 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicatesWithMateCigar/2.18.2.1 | 2020-09-01 |14.0
1019 toolshed.g2.bx.psu.edu/repos/gbcs-embl-heidelberg/je_demultiplex/je_demultiplex/1.2.1 | 2020-09-01 |14.0
1020 toolshed.g2.bx.psu.edu/repos/bgruening/prepare_ligands_for_docking/prepare_ligands_for_docking/3.1.1+galaxy0 | 2020-09-01 |14.0
1021 toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspectclusters/raceid_inspectclusters/3.1 | 2020-09-01 |14.0
1022 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.6.0+galaxy0 | 2020-09-01 |14.0
1023 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.4.4.0 | 2020-09-01 |14.0
1024 toolshed.g2.bx.psu.edu/repos/iuc/ruvseq/ruvseq/1.16.0 | 2020-09-01 |14.0
1025 toolshed.g2.bx.psu.edu/repos/rnateam/paralyzer/paralyzer/1.5 | 2020-09-01 |14.0
1026 toolshed.g2.bx.psu.edu/repos/earlhaminst/hcluster_sg_parser/hcluster_sg_parser/0.2.1 | 2020-09-01 |14.0
1027 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_fisher/2.29.2 | 2020-09-01 |14.0
1028 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathassaygenerator/OpenSwathAssayGenerator/2.5+galaxy0 | 2020-09-01 |14.0
1029 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_pca/ggplot2_pca/2.2.1 | 2020-09-01 |14.0
1030 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.0.2.0 | 2020-09-01 |14.0
1031 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca/2.3.4 | 2020-09-01 |14.0
1032 CONVERTER_bed_to_gff_0 | 2020-09-01 |14.0
1033 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotviewpoint/hicexplorer_hicplotviewpoint/3.4.3.0 | 2020-09-01 |14.0
1034 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_map/0.1.8_1 | 2020-09-01 |14.0
1035 toolshed.g2.bx.psu.edu/repos/iuc/gemini_query/gemini_query/0.20.1+galaxy1 | 2020-09-01 |14.0
1036 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_cluster_reduce_dimension/scanpy_cluster_reduce_dimension/1.4.4.post1+galaxy2 | 2020-09-01 |14.0
1037 toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_preprocessing/maldi_quant_preprocessing/1.18.0.3 | 2020-09-01 |14.0
1038 toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.3.1 | 2020-09-01 |14.0
1039 toolshed.g2.bx.psu.edu/repos/iuc/pureclip/pureclip/1.0.4 | 2020-09-01 |14.0
1040 toolshed.g2.bx.psu.edu/repos/bgruening/wtdbg/wtdbg/1.2.8.1 | 2020-09-01 |14.0
1041 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.3.3 | 2020-09-01 |14.0
1042 toolshed.g2.bx.psu.edu/repos/iuc/qiime_multiple_join_paired_ends/qiime_multiple_join_paired_ends/1.9.1.0 | 2020-09-01 |14.0
1043 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_cells/scanpy_filter_cells/1.4.3+galaxy0 | 2020-09-01 |14.0
1044 toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/2.0.1 | 2020-09-01 |14.0
1045 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_merge/bcftools_merge/1.10 | 2020-09-01 |14.0
1046 toolshed.g2.bx.psu.edu/repos/galaxyp/gffcompare_to_bed/gffcompare_to_bed/0.2.1 | 2020-09-01 |13.0
1047 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicquickqc/hicexplorer_hicquickqc/3.4.3.0 | 2020-09-01 |13.0
1048 bed2gff1 | 2020-09-01 |13.0
1049 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgpeakcall/2.1.1.20160309.0 | 2020-09-01 |13.0
1050 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_randsample/2.1.1.20160309.1 | 2020-09-01 |13.0
1051 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/2.6.0.0 | 2020-09-01 |13.0
1052 toolshed.g2.bx.psu.edu/repos/bgruening/chembl/chembl/0.10.1+galaxy2 | 2020-09-01 |13.0
1053 toolshed.g2.bx.psu.edu/repos/devteam/cummerbund/cummeRbund/2.16.0+galaxy1 | 2020-09-01 |13.0
1054 toolshed.g2.bx.psu.edu/repos/galaxyp/thermo_raw_file_converter/thermo_raw_file_converter/1.2.3+galaxy0 | 2020-09-01 |13.0
1055 toolshed.g2.bx.psu.edu/repos/galaxyp/myrimatch/myrimatch/3.0.20175.0 | 2020-09-01 |13.0
1056 __DATA_FETCH__ | 2020-09-01 |13.0
1057 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/1.12.1.3 | 2020-09-01 |13.0
1058 toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/3.1 | 2020-09-01 |13.0
1059 toolshed.g2.bx.psu.edu/repos/iuc/qiime_align_seqs/qiime_align_seqs/1.9.1.0 | 2020-09-01 |13.0
1060 toolshed.g2.bx.psu.edu/repos/iuc/mash_sketch/mash_sketch/2.1+galaxy0 | 2020-09-01 |13.0
1061 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mapalignerposeclustering/MapAlignerPoseClustering/2.5+galaxy0 | 2020-09-01 |13.0
1062 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicbuildmatrix/hicexplorer_hicbuildmatrix/2.1.4.0 | 2020-09-01 |13.0
1063 toolshed.g2.bx.psu.edu/repos/iuc/egsea/egsea/1.10.0 | 2020-09-01 |13.0
1064 toolshed.g2.bx.psu.edu/repos/peterjc/mira_assembler/mira_assembler/0.0.11 | 2020-09-01 |13.0
1065 toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/2.0.1 | 2020-09-01 |12.0
1066 toolshed.g2.bx.psu.edu/repos/galaxyp/encyclopedia_walnut/encyclopedia_walnut/0.9.5.0 | 2020-09-01 |12.0
1067 CONVERTER_vcf_to_tabix_0 | 2020-09-01 |12.0
1068 interactive_tool_cellxgene | 2020-09-01 |12.0
1069 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/3.4.4.0 | 2020-09-01 |12.0
1070 toolshed.g2.bx.psu.edu/repos/devteam/vcfannotate/vcfannotate/1.0.0_rc3+galaxy0 | 2020-09-01 |12.0
1071 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.3.0 | 2020-09-01 |12.0
1072 toolshed.g2.bx.psu.edu/repos/iuc/mothur_nmds/mothur_nmds/1.39.5.0 | 2020-09-01 |12.0
1073 CONVERTER_wig_to_bigwig | 2020-09-01 |12.0
1074 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_filter/scanpy_filter/1.4.4.post1+galaxy3 | 2020-09-01 |12.0
1075 toolshed.g2.bx.psu.edu/repos/iuc/humann2_renorm_table/humann2_renorm_table/0.9.9.0 | 2020-09-01 |12.0
1076 toolshed.g2.bx.psu.edu/repos/iuc/ucsc_fasplit/fasplit/357 | 2020-09-01 |12.0
1077 toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.4.3+galaxy0 | 2020-09-01 |12.0
1078 toolshed.g2.bx.psu.edu/repos/devteam/kraken_report/kraken-mpa-report/1.2.4 | 2020-09-01 |12.0
1079 toolshed.g2.bx.psu.edu/repos/bgruening/trna_prediction/trnascan/0.4 | 2020-09-01 |12.0
1080 toolshed.g2.bx.psu.edu/repos/devteam/vcfvcfintersect/vcfvcfintersect/1.0.0_rc1+galaxy0 | 2020-09-01 |12.0
1081 toolshed.g2.bx.psu.edu/repos/peterjc/blast2go/blast2go/0.0.9 | 2020-09-01 |12.0
1082 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.3+galaxy1 | 2020-09-01 |12.0
1083 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_data_exporter/cardinal_data_exporter/2.6.0.0 | 2020-09-01 |12.0
1084 __BUILD_LIST__ | 2020-09-01 |12.0
1085 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.3 | 2020-09-01 |12.0
1086 tombo_resquiggle | 2020-09-01 |12.0
1087 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.4.3+galaxy1 | 2020-09-01 |12.0
1088 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix_operations/deeptools_compute_matrix_operations/3.3.2.0.0 | 2020-09-01 |12.0
1089 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_vcf_filter/0.1.8_1 | 2020-09-01 |12.0
1090 toolshed.g2.bx.psu.edu/repos/iuc/chira_map/chira_map/1.4.3+galaxy0 | 2020-09-01 |12.0
1091 toolshed.g2.bx.psu.edu/repos/iuc/qiime_assign_taxonomy/qiime_assign_taxonomy/1.9.1.0 | 2020-09-01 |12.0
1092 toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.2 | 2020-09-01 |12.0
1093 methtools_calling | 2020-09-01 |12.0
1094 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.6.0+galaxy0 | 2020-09-01 |11.0
1095 toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_splitter/fastq_paired_end_splitter/1.1.5 | 2020-09-01 |11.0
1096 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_bdgcmp/2.1.1.20160309.0 | 2020-09-01 |11.0
1097 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.6 | 2020-09-01 |11.0
1098 toolshed.g2.bx.psu.edu/repos/iuc/raceid_trajectory/raceid_trajectory/3.1 | 2020-09-01 |11.0
1099 toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.6.1 | 2020-09-01 |11.0
1100 toolshed.g2.bx.psu.edu/repos/earlhaminst/blast_parser/blast_parser/0.1.2 | 2020-09-01 |11.0
1101 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.4.3+galaxy0 | 2020-09-01 |11.0
1102 toolshed.g2.bx.psu.edu/repos/devteam/sam2interval/sam2interval/1.0.2 | 2020-09-01 |11.0
1103 toolshed.g2.bx.psu.edu/repos/iuc/mothur_biom_info/mothur_biom_info/1.39.5.0 | 2020-09-01 |11.0
1104 toolshed.g2.bx.psu.edu/repos/devteam/megablast_wrapper/megablast_wrapper/1.2.0 | 2020-09-01 |11.0
1105 CONVERTER_bz2_to_uncompressed | 2020-09-01 |11.0
1106 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_umap/scanpy_run_umap/1.4.3+galaxy1 | 2020-09-01 |11.0
1107 toolshed.g2.bx.psu.edu/repos/iuc/stacks_refmap/stacks_refmap/1.46.0 | 2020-09-01 |11.0
1108 toolshed.g2.bx.psu.edu/repos/iuc/stacks_procrad/stacks_procrad/1.46.0 | 2020-09-01 |11.0
1109 CONVERTER_vcf_to_bgzip_0 | 2020-09-01 |11.0
1110 toolshed.g2.bx.psu.edu/repos/devteam/flanking_features/flanking_features_1/4.0.1 | 2020-09-01 |11.0
1111 OpenSwathDecoyGenerator | 2020-09-01 |11.0
1112 toolshed.g2.bx.psu.edu/repos/iuc/msaboot/msaboot/0.1.2 | 2020-09-01 |11.0
1113 toolshed.g2.bx.psu.edu/repos/bgruening/column_arrange_by_header/bg_column_arrange_by_header/0.2 | 2020-09-01 |11.0
1114 toolshed.g2.bx.psu.edu/repos/iuc/disco/disco/1.2.0 | 2020-09-01 |11.0
1115 TargetedFileConverter | 2020-09-01 |11.0
1116 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindrestrictionsites/hicexplorer_hicfindrestrictionsites/3.4.3.0 | 2020-09-01 |11.0
1117 toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_fasta/cshl_fastq_to_fasta/1.0.2 | 2020-09-01 |11.0
1118 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurelinkerunlabeledqt/FeatureLinkerUnlabeledQT/2.5+galaxy0 | 2020-09-01 |11.0
1119 toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.3.0 | 2020-09-01 |11.0
1120 toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/1.3.6 | 2020-09-01 |11.0
1121 Summary_Statistics1 | 2020-09-01 |11.0
1122 toolshed.g2.bx.psu.edu/repos/iuc/graphlan_annotate/graphlan_annotate/1.0.0.0 | 2020-09-01 |11.0
1123 __APPLY_RULES__ | 2020-09-01 |11.0
1124 OpenSwathAssayGenerator | 2020-09-01 |11.0
1125 toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.6.22.post1+galaxy4 | 2020-09-01 |10.0
1126 CONVERTER_interval_to_bigwig_0 | 2020-09-01 |10.0
1127 toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.1 | 2020-09-01 |10.0
1128 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: polydot77/5.0.0.1 | 2020-09-01 |10.0
1129 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.4.3+galaxy1 | 2020-09-01 |10.0
1130 interactive_tool_climate_notebook | 2020-09-01 |10.0
1131 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_filter/4.3+t.galaxy0 | 2020-09-01 |10.0
1132 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_rpsblast_wrapper/2.10.1+galaxy0 | 2020-09-01 |10.0
1133 toolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.2.5 | 2020-09-01 |10.0
1134 toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.1.0 | 2020-09-01 |10.0
1135 interactive_tool_pyiron | 2020-09-01 |10.0
1136 toolshed.g2.bx.psu.edu/repos/iuc/mothur_anosim/mothur_anosim/1.39.5.0 | 2020-09-01 |10.0
1137 toolshed.g2.bx.psu.edu/repos/devteam/dna_filtering/histogram_rpy/1.0.3 | 2020-09-01 |10.0
1138 toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_groups/mothur_merge_groups/1.39.5.0 | 2020-09-01 |10.0
1139 toolshed.g2.bx.psu.edu/repos/iuc/trinity_abundance_estimates_to_matrix/trinity_abundance_estimates_to_matrix/2.9.1 | 2020-09-01 |10.0
1140 toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_mapping/seq_filter_by_mapping/0.0.6 | 2020-09-01 |10.0
1141 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicconvertformat/hicexplorer_hicconvertformat/3.4.3.0 | 2020-09-01 |10.0
1142 toolshed.g2.bx.psu.edu/repos/devteam/samtools_rmdup/samtools_rmdup/1.0.0 | 2020-09-01 |10.0
1143 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_svm_classifier/sklearn_svm_classifier/1.0.8.2 | 2020-09-01 |10.0
1144 toolshed.g2.bx.psu.edu/repos/ethevenot/univariate/Univariate/2.2.4 | 2020-09-01 |10.0
1145 toolshed.g2.bx.psu.edu/repos/devteam/samtool_filter2/samtool_filter2/1.8 | 2020-09-01 |10.0
1146 toolshed.g2.bx.psu.edu/repos/bgruening/find_subsequences/bg_find_subsequences/0.2 | 2020-09-01 |10.0
1147 Extract_features1 | 2020-09-01 |10.0
1148 toolshed.g2.bx.psu.edu/repos/mbernt/maxbin2/maxbin2/2.2.7+galaxy2 | 2020-09-01 |10.0
1149 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca_visualize/bio3d_pca_visualize/2.3.4 | 2020-09-01 |10.0
1150 toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_dist_scatter/scater_plot_dist_scatter/1.12.2 | 2020-09-01 |9.0
1151 toolshed.g2.bx.psu.edu/repos/imgteam/bfconvert/ip_convertimage/0.4 | 2020-09-01 |9.0
1152 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_rnaseq/qualimap_rnaseq/2.2.2c+galaxy1 | 2020-09-01 |9.0
1153 toolshed.g2.bx.psu.edu/repos/iuc/qiime_collapse_samples/qiime_collapse_samples/1.9.1.0 | 2020-09-01 |9.0
1154 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_rnadigestor/RNADigestor/2.5+galaxy0 | 2020-09-01 |9.0
1155 toolshed.g2.bx.psu.edu/repos/galaxyp/flashlfq/flashlfq/1.0.3.0 | 2020-09-01 |9.0
1156 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.6 | 2020-09-01 |9.0
1157 hgv_david | 2020-09-01 |9.0
1158 toolshed.g2.bx.psu.edu/repos/galaxyp/mz_to_sqlite/mz_to_sqlite/2.0.4+galaxy1 | 2020-09-01 |9.0
1159 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_alnqual/lofreq_alnqual/2.1.3.1+galaxy0 | 2020-09-01 |9.0
1160 toolshed.g2.bx.psu.edu/repos/peterjc/blastxml_to_top_descr/blastxml_to_top_descr/0.0.9 | 2020-09-01 |9.0
1161 toolshed.g2.bx.psu.edu/repos/devteam/histogram/histogram_rpy/1.0.4 | 2020-09-01 |9.0
1162 toolshed.g2.bx.psu.edu/repos/iuc/merge_metaphlan_tables/merge_metaphlan_tables/2.6.0.0 | 2020-09-01 |9.0
1163 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_esearch/ncbi_eutils_esearch/1.2 | 2020-09-01 |9.0
1164 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_annotatebed/2.29.2 | 2020-09-01 |9.0
1165 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_box/prepare_box/0.1.0 | 2020-09-01 |9.0
1166 toolshed.g2.bx.psu.edu/repos/melpetera/tablemerge/tablemerge/1.0.1 | 2020-09-01 |9.0
1167 toolshed.g2.bx.psu.edu/repos/earlhaminst/hcluster_sg/hcluster_sg/0.5.1.1 | 2020-09-01 |9.0
1168 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_umap/scanpy_run_umap/1.6.0+galaxy0 | 2020-09-01 |9.0
1169 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.3.1+galaxy0 | 2020-09-01 |9.0
1170 toolshed.g2.bx.psu.edu/repos/galaxyp/encyclopedia_searchtolib/encyclopedia_searchtolib/0.9.5.0 | 2020-09-01 |9.0
1171 toolshed.g2.bx.psu.edu/repos/galaxyp/percolator/percolator_input_converters/3.1 | 2020-09-01 |9.0
1172 toolshed.g2.bx.psu.edu/repos/iuc/mothur_cooccurrence/mothur_cooccurrence/1.39.5.0 | 2020-09-01 |9.0
1173 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/4.3+T.galaxy4 | 2020-09-01 |9.0
1174 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.3.1+galaxy1 | 2020-09-01 |9.0
1175 toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_pretty_report/0.22.1 | 2020-09-01 |9.0
1176 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.4.3.0 | 2020-09-01 |8.0
1177 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/3.4.3.0 | 2020-09-01 |8.0
1178 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.6.0+galaxy0 | 2020-09-01 |8.0
1179 toolshed.g2.bx.psu.edu/repos/galaxyp/mz_to_sqlite/mz_to_sqlite/2.0.4 | 2020-09-01 |8.0
1180 toolshed.g2.bx.psu.edu/repos/iuc/snap_training/snap_training/2013_11_29+galaxy1 | 2020-09-01 |8.0
1181 toolshed.g2.bx.psu.edu/repos/iuc/fastani/fastani/1.3 | 2020-09-01 |8.0
1182 toolshed.g2.bx.psu.edu/repos/bgruening/fpocket/fpocket/3.1.4.2+galaxy0 | 2020-09-01 |8.0
1183 toolshed.g2.bx.psu.edu/repos/iuc/hmmer3/hmmer_phmmer/0.1.0 | 2020-09-01 |8.0
1184 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/wolf_psort/0.0.11 | 2020-09-01 |8.0
1185 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.4.13 | 2020-09-01 |8.0
1186 toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/sra_pileup/2.10.3 | 2020-09-01 |8.0
1187 interactive_tool_guacamole_desktop | 2020-09-01 |8.0
1188 CONVERTER_bed_to_bgzip_0 | 2020-09-01 |8.0
1189 toolshed.g2.bx.psu.edu/repos/iuc/humann2_regroup_table/humann2_regroup_table/0.11.1.0 | 2020-09-01 |8.0
1190 toolshed.g2.bx.psu.edu/repos/bgruening/minced/minced/0.1.5 | 2020-09-01 |8.0
1191 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.4.4.post1+galaxy2 | 2020-09-01 |8.0
1192 CONVERTER_bed_to_fli_0 | 2020-09-01 |8.0
1193 toolshed.g2.bx.psu.edu/repos/iuc/miniasm/miniasm/0.3+galaxy0 | 2020-09-01 |8.0
1194 toolshed.g2.bx.psu.edu/repos/iuc/mageck_mle/mageck_mle/0.5.8.1 | 2020-09-01 |8.0
1195 toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond_makedb/0.9.21 | 2020-09-01 |8.0
1196 toolshed.g2.bx.psu.edu/repos/iuc/chira_collapse/chira_collapse/1.4.3+galaxy0 | 2020-09-01 |8.0
1197 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.29.2 | 2020-09-01 |8.0
1198 toolshed.g2.bx.psu.edu/repos/gbcs-embl-heidelberg/je_demultiplex_illu/je_demultiplex_illu/1.2.1 | 2020-09-01 |8.0
1199 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_mergebedgraph/2.19.0 | 2020-09-01 |8.0
1200 toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.6.1.1 | 2020-09-01 |8.0
1201 toolshed.g2.bx.psu.edu/repos/ebi-gxa/retrieve_scxa/retrieve_scxa/v0.0.2+galaxy2 | 2020-09-01 |8.0
1202 toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_tabular/fastq_to_tabular/1.1.5 | 2020-09-01 |8.0
1203 toolshed.g2.bx.psu.edu/repos/devteam/bamtools/bamtools/2.4.0 | 2020-09-01 |8.0
1204 toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/uniprot/0.2 | 2020-09-01 |8.0
1205 toolshed.g2.bx.psu.edu/repos/iuc/pygenometracks/pygenomeTracks/3.3 | 2020-09-01 |8.0
1206 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_heatmap/deeptools_plot_heatmap/3.0.2.0 | 2020-09-01 |8.0
1207 toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_extract/umi_tools_extract/0.5.3.2 | 2020-09-01 |8.0
1208 toolshed.g2.bx.psu.edu/repos/devteam/principal_component_analysis/pca1/1.0.2 | 2020-09-01 |7.0
1209 toolshed.g2.bx.psu.edu/repos/galaxyp/custom_pro_db/custom_pro_db/1.22.0 | 2020-09-01 |7.0
1210 toolshed.g2.bx.psu.edu/repos/iuc/fraggenescan/fraggenescan/1.30.0 | 2020-09-01 |7.0
1211 toolshed.g2.bx.psu.edu/repos/earlhaminst/t_coffee/t_coffee/11.0.8_1 | 2020-09-01 |7.0
1212 toolshed.g2.bx.psu.edu/repos/devteam/vcfprimers/vcfprimers/1.0.0_rc3+galaxy0 | 2020-09-01 |7.0
1213 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_filter_cells/seurat_filter_cells/3.1.1+galaxy0 | 2020-09-01 |7.0
1214 toolshed.g2.bx.psu.edu/repos/bgruening/graphmap_align/graphmap_align/0.5.2 | 2020-09-01 |7.0
1215 toolshed.g2.bx.psu.edu/repos/galaxyp/metaquantome_db/metaquantome_db/1.0.0-0 | 2020-09-01 |7.0
1216 toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_filter/openbabel_filter/3.1.1+galaxy0 | 2020-09-01 |7.0
1217 toolshed.g2.bx.psu.edu/repos/galaxyp/encyclopedia_quantify/encyclopedia_quantify/0.9.5.0 | 2020-09-01 |7.0
1218 toolshed.g2.bx.psu.edu/repos/iuc/kraken_taxonomy_report/kraken_taxonomy_report/0.0.2 | 2020-09-01 |7.0
1219 toolshed.g2.bx.psu.edu/repos/devteam/fastq_stats/fastq_stats/1.1.5 | 2020-09-01 |7.0
1220 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_merge/xcms_merge/3.4.4.0 | 2020-09-01 |7.0
1221 toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_coremicrobiome/mothur_get_coremicrobiome/1.39.5.0 | 2020-09-01 |7.0
1222 toolshed.g2.bx.psu.edu/repos/iuc/artic_minion/artic_minion/1.1.3+galaxy0 | 2020-09-01 |7.0
1223 toolshed.g2.bx.psu.edu/repos/rnateam/locarna_multiple/locarna_multiple/1.9.0.1 | 2020-09-01 |7.0
1224 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_normalise_data/scanpy_normalise_data/1.6.0+galaxy0 | 2020-09-01 |7.0
1225 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/NSPDK_candidateClust/9.2.3 | 2020-09-01 |7.0
1226 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina/docking/0.3.0 | 2020-09-01 |7.0
1227 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bedtoigv/2.29.2 | 2020-09-01 |7.0
1228 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_receptor/prepare_receptor/0.1.0 | 2020-09-01 |7.0
1229 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_coverage/deeptools_plot_coverage/3.3.2.0.0 | 2020-09-01 |7.0
1230 toolshed.g2.bx.psu.edu/repos/iuc/jq/jq/1.0 | 2020-09-01 |7.0
1231 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/3.4.3.0 | 2020-09-01 |7.0
1232 toolshed.g2.bx.psu.edu/repos/devteam/scatterplot/scatterplot_rpy/1.0.3 | 2020-09-01 |7.0
1233 toolshed.g2.bx.psu.edu/repos/rnateam/piranha/piranha/0.1.0 | 2020-09-01 |7.0
1234 toolshed.g2.bx.psu.edu/repos/galaxyp/translate_bed/translate_bed/0.1.0 | 2020-09-01 |7.0
1235 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/signalp3/0.0.19 | 2020-09-01 |7.0
1236 toolshed.g2.bx.psu.edu/repos/iuc/varscan_somatic/varscan_somatic/2.4.3.6 | 2020-09-01 |7.0
1237 toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.1.5+galaxy2 | 2020-09-01 |7.0
1238 toolshed.g2.bx.psu.edu/repos/eschen42/w4mjoinpn/w4mjoinpn/0.98.2 | 2020-09-01 |7.0
1239 toolshed.g2.bx.psu.edu/repos/iuc/trinity_filter_low_expr_transcripts/trinity_filter_low_expr_transcripts/2.9.1 | 2020-09-01 |7.0
1240 toolshed.g2.bx.psu.edu/repos/crs4/bwa_mem/bwa_mem/0.8.0 | 2020-09-01 |7.0
1241 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_NormalizeFasta/2.18.2.1 | 2020-09-01 |6.0
1242 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_md/gmx_md/2019.1 | 2020-09-01 |6.0
1243 toolshed.g2.bx.psu.edu/repos/iuc/sniffles/sniffles/1.0.12+galaxy0 | 2020-09-01 |6.0
1244 toolshed.g2.bx.psu.edu/repos/iuc/trinity_contig_exn50_statistic/trinity_contig_exn50_statistic/2.9.1 | 2020-09-01 |6.0
1245 toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy0 | 2020-09-01 |6.0
1246 toolshed.g2.bx.psu.edu/repos/iuc/intervene/intervene_pairwise/0.6.4 | 2020-09-01 |6.0
1247 CONVERTER_bed_to_tabix_0 | 2020-09-01 |6.0
1248 toolshed.g2.bx.psu.edu/repos/galaxyp/bed_to_protein_map/bed_to_protein_map/0.2.0 | 2020-09-01 |6.0
1249 toolshed.g2.bx.psu.edu/repos/galaxyp/peptide_genomic_coordinate/peptide_genomic_coordinate/0.1.1 | 2020-09-01 |6.0
1250 toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_cosine_analysis/mdanalysis_cosine_analysis/1.0.0+galaxy0 | 2020-09-01 |6.0
1251 toolshed.g2.bx.psu.edu/repos/iuc/mothur_normalize_shared/mothur_normalize_shared/1.39.5.0 | 2020-09-01 |6.0
1252 CONVERTER_fasta_to_2bit | 2020-09-01 |6.0
1253 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_makewindowsbed/2.29.2 | 2020-09-01 |6.0
1254 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.2 | 2020-09-01 |6.0
1255 toolshed.g2.bx.psu.edu/repos/iuc/kallisto_pseudo/kallisto_pseudo/0.46.0.1 | 2020-09-01 |6.0
1256 toolshed.g2.bx.psu.edu/repos/jjohnson/rsem/rsem_prepare_reference/1.1.17 | 2020-09-01 |6.0
1257 toolshed.g2.bx.psu.edu/repos/devteam/cuffcompare/cuffcompare/2.2.1.2 | 2020-09-01 |6.0
1258 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: megamerger53/5.0.0.1 | 2020-09-01 |6.0
1259 toolshed.g2.bx.psu.edu/repos/bebatut/format_metaphlan2_output/format_metaphlan2_output/0.1.0 | 2020-09-01 |6.0
1260 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.3.0 | 2020-09-01 |6.0
1261 toolshed.g2.bx.psu.edu/repos/rnateam/rnashapes/RNAshapes/3.3.0 | 2020-09-01 |6.0
1262 toolshed.g2.bx.psu.edu/repos/iuc/scater_create_qcmetric_ready_sce/scater_create_qcmetric_ready_sce/1.12.2 | 2020-09-01 |6.0
1263 toolshed.g2.bx.psu.edu/repos/iuc/humann2_regroup_table/humann2_regroup_table/0.9.9.0 | 2020-09-01 |6.0
1264 toolshed.g2.bx.psu.edu/repos/iuc/humann2/humann2/0.9.9.0 | 2020-09-01 |6.0
1265 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peptideindexer/PeptideIndexer/2.3.0 | 2020-09-01 |6.0
1266 toolshed.g2.bx.psu.edu/repos/iuc/mummer_nucmer/mummer_nucmer/4.0.0beta2+galaxy0 | 2020-09-01 |6.0
1267 toolshed.g2.bx.psu.edu/repos/bgruening/augustus_training/augustus_training/3.3.3 | 2020-09-01 |6.0
1268 bwtool-lift | 2020-09-01 |6.0
1269 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.3.0 | 2020-09-01 |6.0
1270 toolshed.g2.bx.psu.edu/repos/iuc/humann2_rename_table/humann2_rename_table/0.11.1.0 | 2020-09-01 |6.0
1271 toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_chimera_detection/2.8.3.0 | 2020-09-01 |6.0
1272 toolshed.g2.bx.psu.edu/repos/imgteam/2d_histogram_equalization/ip_histogram_equalization/0.0.1 | 2020-09-01 |6.0
1273 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_export_samplemetadata/xcms_export_samplemetadata/3.4.4.0 | 2020-09-01 |6.0
1274 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.3.0 | 2020-09-01 |6.0
1275 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.3.0 | 2020-09-01 |6.0
1276 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17+galaxy0 | 2020-09-01 |6.0
1277 toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_interlacer/fastq_paired_end_interlacer/1.2.0.1 | 2020-09-01 |6.0
1278 toolshed.g2.bx.psu.edu/repos/iuc/mixcr_analyze/mixcr_analyze/3.0.5.0 | 2020-09-01 |6.0
1279 toolshed.g2.bx.psu.edu/repos/galaxyp/pep_pointer/pep_pointer/0.1.3 | 2020-09-01 |6.0
1280 toolshed.g2.bx.psu.edu/repos/iuc/drep_dereplicate/drep_dereplicate/2.5.4.0 | 2020-09-01 |6.0
1281 toolshed.g2.bx.psu.edu/repos/devteam/vcfcombine/vcfcombine/1.0.0_rc3+galaxy0 | 2020-09-01 |6.0
1282 toolshed.g2.bx.psu.edu/repos/iuc/column_remove_by_header/column_remove_by_header/0.0.1 | 2020-09-01 |6.0
1283 toolshed.g2.bx.psu.edu/repos/devteam/fastx_barcode_splitter/cshl_fastx_barcode_splitter/1.0.1 | 2020-09-01 |6.0
1284 toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_pca/scater_plot_pca/1.12.2 | 2020-09-01 |6.0
1285 toolshed.g2.bx.psu.edu/repos/iuc/spaln/spaln/2.3.2+galaxy0 | 2020-09-01 |6.0
1286 Paste1 | 2020-09-01 |6.0
1287 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idscoreswitcher/IDScoreSwitcher/2.3.0 | 2020-09-01 |6.0
1288 toolshed.g2.bx.psu.edu/repos/ebi-gxa/ucsc_cell_browser/ucsc_cell_browser/0.5.21+galaxy0 | 2020-09-01 |6.0
1289 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.1.0 | 2020-09-01 |6.0
1290 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_retcor/abims_xcms_retcor/3.4.4.1 | 2020-09-01 |6.0
1291 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.3.0 | 2020-09-01 |6.0
1292 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.1 | 2020-09-01 |6.0
1293 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idconflictresolver/IDConflictResolver/2.3.0 | 2020-09-01 |6.0
1294 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.3.1.1 | 2020-09-01 |6.0
1295 toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.26.0 | 2020-09-01 |6.0
1296 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_ordercells/monocle3_orderCells/0.1.4+galaxy0 | 2020-09-01 |6.0
1297 toolshed.g2.bx.psu.edu/repos/rnateam/segemehl/segemehl/0.2.0.4 | 2020-09-01 |6.0
1298 toolshed.g2.bx.psu.edu/repos/iuc/colibread_lordec/lordec/0.9 | 2020-09-01 |6.0
1299 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.3.0 | 2020-09-01 |6.0
1300 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peptideindexer/PeptideIndexer/2.5+galaxy0 | 2020-09-01 |6.0
1301 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_FPKM_count/2.6.4.1 | 2020-09-01 |6.0
1302 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_design/mothur_make_design/1.39.5.0 | 2020-09-01 |6.0
1303 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_multiplexresolver/MultiplexResolver/2.3.0 | 2020-09-01 |6.0
1304 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefindermultiplex/FeatureFinderMultiplex/2.3.0 | 2020-09-01 |6.0
1305 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_proteinquantifier/ProteinQuantifier/2.3.0 | 2020-09-01 |6.0
1306 toolshed.g2.bx.psu.edu/repos/iuc/gemini_annotate/gemini_annotate/0.20.1+galaxy2 | 2020-09-01 |5.0
1307 toolshed.g2.bx.psu.edu/repos/iuc/trinity_run_de_analysis/trinity_run_de_analysis/2.9.1 | 2020-09-01 |5.0
1308 __FILTER_FAILED_DATASETS__ | 2020-09-01 |5.0
1309 toolshed.g2.bx.psu.edu/repos/ebi-gxa/hca_matrix_downloader/hca_matrix_downloader/v0.0.3+galaxy0 | 2020-09-01 |5.0
1310 toolshed.g2.bx.psu.edu/repos/bgruening/svm_classifier/svm_classifier/0.9 | 2020-09-01 |5.0
1311 toolshed.g2.bx.psu.edu/repos/devteam/cuffnorm/cuffnorm/2.2.1.3 | 2020-09-01 |5.0
1312 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_fillpeaks/abims_xcms_fillPeaks/3.4.4.0 | 2020-09-01 |5.0
1313 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.4.3.0 | 2020-09-01 |5.0
1314 testtoolshed.g2.bx.psu.edu/repos/messersc/jamm/jamm/1.0.7 | 2020-09-01 |5.0
1315 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68 | 2020-09-01 |5.0
1316 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.4.0d-2 | 2020-09-01 |5.0
1317 toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy1 | 2020-09-01 |5.0
1318 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_normalise_data/seurat_normalise_data/3.1.1+galaxy0 | 2020-09-01 |5.0
1319 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.3.3.0 | 2020-09-01 |5.0
1320 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_read10x/seurat_read10x/3.1.1+galaxy1 | 2020-09-01 |5.0
1321 toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.14+galaxy0 | 2020-09-01 |5.0
1322 toolshed.g2.bx.psu.edu/repos/iuc/mothur_metastats/mothur_metastats/1.39.5.0 | 2020-09-01 |5.0
1323 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_nvt/gmx_nvt/2018.2 | 2020-09-01 |5.0
1324 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_wiggle_to_scatter/0.69.8+galaxy7 | 2020-09-01 |5.0
1325 toolshed.g2.bx.psu.edu/repos/jjohnson/samtools_filter/samtools_filter/1.1.1 | 2020-09-01 |5.0
1326 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicnormalize/hicexplorer_hicnormalize/3.4.3.0 | 2020-09-01 |5.0
1327 toolshed.g2.bx.psu.edu/repos/devteam/vcf_filter/vcf_filter/1.0.0 | 2020-09-01 |5.0
1328 wiggle2simple1 | 2020-09-01 |5.0
1329 toolshed.g2.bx.psu.edu/repos/iuc/xpath/xpath/1.0.0 | 2020-09-01 |5.0
1330 toolshed.g2.bx.psu.edu/repos/devteam/kraken_filter/kraken-filter/1.3.1 | 2020-09-01 |5.0
1331 toolshed.g2.bx.psu.edu/repos/iuc/bcftools/bcftools_view/0.1.19.0 | 2020-09-01 |5.0
1332 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.5+galaxy0 | 2020-09-01 |5.0
1333 toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.3+galaxy2 | 2020-09-01 |5.0
1334 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hictransform/hicexplorer_hictransform/3.4.3.0 | 2020-09-01 |5.0
1335 toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.13 | 2020-09-01 |5.0
1336 translate_nucleotides | 2020-09-01 |5.0
1337 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/2.10.1+galaxy0 | 2020-09-01 |5.0
1338 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_databases/4.3+T.galaxy2 | 2020-09-01 |5.0
1339 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_merge_topology_files/gmx_merge_topology_files/3.2.0+galaxy0 | 2020-09-01 |5.0
1340 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.6.0+galaxy0 | 2020-09-01 |5.0
1341 toolshed.g2.bx.psu.edu/repos/iuc/pick_open_reference_otus/pick_open_reference_otus/1.9.1.0 | 2020-09-01 |5.0
1342 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_read_10x/scanpy_read_10x/1.6.0+galaxy0 | 2020-09-01 |5.0
1343 toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.0.4 | 2020-09-01 |5.0
1344 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.0.1.0 | 2020-09-01 |5.0
1345 toolshed.g2.bx.psu.edu/repos/devteam/subtract_query/subtract_query1/0.1 | 2020-09-01 |5.0
1346 rnalfoldz | 2020-09-01 |5.0
1347 toolshed.g2.bx.psu.edu/repos/bgruening/rdock_rbcavity/rdock_rbcavity/2013.1-0+galaxy0 | 2020-09-01 |5.0
1348 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicinfo/hicexplorer_hicinfo/3.4.3.0 | 2020-09-01 |5.0
1349 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_plotcells/monocle3_plotCells/0.1.5+galaxy1 | 2020-09-01 |5.0
1350 toolshed.g2.bx.psu.edu/repos/iuc/mothur_lefse/mothur_lefse/1.39.5.0 | 2020-09-01 |5.0
1351 toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin/1.3.0+galaxy1 | 2020-09-01 |5.0
1352 toolshed.g2.bx.psu.edu/repos/devteam/vcftools_compare/vcftools_compare/0.1 | 2020-09-01 |5.0
1353 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.26 | 2020-09-01 |5.0
1354 toolshed.g2.bx.psu.edu/repos/iuc/gemini_db_info/gemini_db_info/0.20.1 | 2020-09-01 |5.0
1355 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_topmarkers/monocle3_topmarkers/0.1.5+galaxy0 | 2020-09-01 |5.0
1356 toolshed.g2.bx.psu.edu/repos/iuc/poretools_extract/poretools_extract/0.6.1a1.0 | 2020-09-01 |4.0
1357 toolshed.g2.bx.psu.edu/repos/bgruening/glimmer3/glimmer_not-knowlegde-based/0.2 | 2020-09-01 |4.0
1358 toolshed.g2.bx.psu.edu/repos/crs4/sopra/sopra_wpc/0.1 | 2020-09-01 |4.0
1359 toolshed.g2.bx.psu.edu/repos/iuc/enasearch_search_data/enasearch_search_data/0.1.1.0 | 2020-09-01 |4.0
1360 toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_extract_rmsd/mdanalysis_extract_rmsd/1.0.0+galaxy0 | 2020-09-01 |4.0
1361 toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fastq/tabular_to_fastq/1.1.5 | 2020-09-01 |4.0
1362 CONVERTER_fasta_to_bowtie_base_index | 2020-09-01 |4.0
1363 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/2.2.1+galaxy1 | 2020-09-01 |4.0
1364 toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/0.8.24.1 | 2020-09-01 |4.0
1365 toolshed.g2.bx.psu.edu/repos/iuc/trinotate/trinotate/3.2.1 | 2020-09-01 |4.0
1366 toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.0.0 | 2020-09-01 |4.0
1367 toolshed.g2.bx.psu.edu/repos/iuc/dada2_seqcounts/dada2_seqCounts/1.14+galaxy0 | 2020-09-01 |4.0
1368 smooth_running_window | 2020-09-01 |4.0
1369 toolshed.g2.bx.psu.edu/repos/imgteam/binary2labelimage/ip_binary_to_labelimage/0.4 | 2020-09-01 |4.0
1370 toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/3.2 | 2020-09-01 |4.0
1371 toolshed.g2.bx.psu.edu/repos/galaxyp/maldi_quant_peak_detection/maldi_quant_peak_detection/1.18.0.4 | 2020-09-01 |4.0
1372 toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_remsmall/openbabel_remSmall/3.1.1+galaxy0 | 2020-09-01 |4.0
1373 toolshed.g2.bx.psu.edu/repos/kpbioteam/clusterprofiler_bitr/clusterprofiler_bitr/0.1.0 | 2020-09-01 |4.0
1374 toolshed.g2.bx.psu.edu/repos/imgteam/2d_auto_threshold/ip_threshold/0.0.4 | 2020-09-01 |4.0
1375 toolshed.g2.bx.psu.edu/repos/bgruening/chemical_data_sources/ctb_online_data_fetch/0.2 | 2020-09-01 |4.0
1376 toolshed.g2.bx.psu.edu/repos/devteam/fastx_collapser/cshl_fastx_collapser/1.0.1 | 2020-09-01 |4.0
1377 toolshed.g2.bx.psu.edu/repos/devteam/cuffdiff/cuffdiff/2.2.1.5 | 2020-09-01 |4.0
1378 toolshed.g2.bx.psu.edu/repos/iuc/mummer_delta_filter/mummer_delta_filter/4.0.0beta2+galaxy0 | 2020-09-01 |4.0
1379 toolshed.g2.bx.psu.edu/repos/iuc/genrich/genrich/0.5+galaxy1 | 2020-09-01 |4.0
1380 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.3.3 | 2020-09-01 |4.0
1381 toolshed.g2.bx.psu.edu/repos/imgteam/2d_simple_filter/ip_filter_standard/0.0.3 | 2020-09-01 |4.0
1382 gene2exon1 | 2020-09-01 |4.0
1383 toolshed.g2.bx.psu.edu/repos/chemteam/biomd_rmsd_clustering/biomd_rmsd_clustering/0.1.5.2+galaxy0 | 2020-09-01 |4.0
1384 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_myrimatchadapter/MyriMatchAdapter/2.5+galaxy0 | 2020-09-01 |4.0
1385 toolshed.g2.bx.psu.edu/repos/iuc/mitos/mitos/1.0.5 | 2020-09-01 |4.0
1386 toolshed.g2.bx.psu.edu/repos/iuc/gubbins/gubbins/0.1.0 | 2020-09-01 |4.0
1387 toolshed.g2.bx.psu.edu/repos/rnateam/splitfasta/rbc_splitfasta/0.2.0 | 2020-09-01 |4.0
1388 toolshed.g2.bx.psu.edu/repos/marie-tremblay-metatoul/normalization/normalization/2.0.1 | 2020-09-01 |4.0
1389 toolshed.g2.bx.psu.edu/repos/bgruening/circexplorer/circexplorer/1.1.9.0 | 2020-09-01 |4.0
1390 toolshed.g2.bx.psu.edu/repos/iuc/poretools_qualdist/poretools_qualdist/0.6.1a1.0 | 2020-09-01 |4.0
1391 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_md/gmx_md/2018.2 | 2020-09-01 |4.0
1392 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.6.0.0 | 2020-09-01 |4.0
1393 toolshed.g2.bx.psu.edu/repos/bebatut/combine_metaphlan2_humann2/combine_metaphlan2_humann2/0.1.0 | 2020-09-01 |4.0
1394 CONVERTER_sam_to_bigwig_0 | 2020-09-01 |4.0
1395 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.5+galaxy0 | 2020-09-01 |4.0
1396 bfast_wrapper | 2020-09-01 |4.0
1397 toolshed.g2.bx.psu.edu/repos/bjoern-gruening/sed_wrapper/sed_stream_editor/0.0.1 | 2020-09-01 |4.0
1398 toolshed.g2.bx.psu.edu/repos/iuc/snp_sites/snp_sites/2.5.1+galaxy0 | 2020-09-01 |4.0
1399 toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer/fastq_trimmer/1.1.1 | 2020-09-01 |4.0
1400 toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0 | 2020-09-01 |4.0
1401 toolshed.g2.bx.psu.edu/repos/galaxyp/encyclopedia_fasta_to_prosit_csv/encyclopedia_fasta_to_prosit_csv/0.9.5.0 | 2020-09-01 |4.0
1402 toolshed.g2.bx.psu.edu/repos/iuc/roary/roary/3.13.0 | 2020-09-01 |4.0
1403 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/0.3.3 | 2020-09-01 |4.0
1404 toolshed.g2.bx.psu.edu/repos/iuc/filter_tabular/filter_tabular/2.0.0 | 2020-09-01 |4.0
1405 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_sortbed/2.27.1 | 2020-09-01 |4.0
1406 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_clusterbed/2.29.2 | 2020-09-01 |4.0
1407 toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/0.7.0.3 | 2020-09-01 |4.0
1408 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_shufflebed/2.29.2 | 2020-09-01 |4.0
1409 toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_tsne/scater_plot_tsne/1.12.2 | 2020-09-01 |4.0
1410 toolshed.g2.bx.psu.edu/repos/iuc/intervene/intervene_upset/0.6.4 | 2020-09-01 |4.0
1411 toolshed.g2.bx.psu.edu/repos/iuc/proteinortho_summary/proteinortho_summary/6.0.14+galaxy2.9.1 | 2020-09-01 |4.0
1412 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_enrichment/deeptools_plot_enrichment/3.3.2.0.0 | 2020-09-01 |4.0
1413 toolshed.g2.bx.psu.edu/repos/devteam/short_reads_figure_score/quality_score_distribution/1.0.2 | 2020-09-01 |4.0
1414 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0 | 2020-09-01 |4.0
1415 toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.2.2+galaxy1 | 2020-09-01 |4.0
1416 toolshed.g2.bx.psu.edu/repos/iuc/qiime_plot_taxa_summary/qiime_plot_taxa_summary/1.9.1.0 | 2020-09-01 |4.0
1417 toolshed.g2.bx.psu.edu/repos/devteam/fastq_stats/fastq_stats/1.1.1 | 2020-09-01 |4.0
1418 toolshed.g2.bx.psu.edu/repos/iuc/pipelign/pipelign/0.2+galaxy0 | 2020-09-01 |4.0
1419 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_shortreads/stacks2_shortreads/2.4+galaxy1 | 2020-09-01 |4.0
1420 toolshed.g2.bx.psu.edu/repos/iuc/abricate/abricate_list/0.9.8 | 2020-09-01 |4.0
1421 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.5+galaxy0 | 2020-09-01 |4.0
1422 toolshed.g2.bx.psu.edu/repos/imgteam/2d_feature_extraction/ip_2d_feature_extraction/0.1.1 | 2020-09-01 |4.0
1423 tombo_detect_modifications | 2020-09-01 |4.0
1424 toolshed.g2.bx.psu.edu/repos/devteam/sam_merge/sam_merge2/1.1.2 | 2020-09-01 |4.0
1425 toolshed.g2.bx.psu.edu/repos/iuc/maker_map_ids/maker_map_ids/2.31.10 | 2020-09-01 |4.0
1426 toolshed.g2.bx.psu.edu/repos/melpetera/idchoice/idchoice/18.01 | 2020-09-01 |4.0
1427 toolshed.g2.bx.psu.edu/repos/devteam/picard/PicardInsertSize/1.56.0 | 2020-09-01 |4.0
1428 toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_cosine_analysis/mdanalysis_cosine_analysis/0.20 | 2020-09-01 |3.0
1429 toolshed.g2.bx.psu.edu/repos/rnateam/pipmir/pipmir/0.1.0 | 2020-09-01 |3.0
1430 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.8.1 | 2020-09-01 |3.0
1431 toolshed.g2.bx.psu.edu/repos/devteam/concat/gops_concat_1/1.0.1 | 2020-09-01 |3.0
1432 toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.7.0 | 2020-09-01 |3.0
1433 toolshed.g2.bx.psu.edu/repos/bgruening/mordred/ctb_mordred_descriptors/1.2.0+galaxy0 | 2020-09-01 |3.0
1434 CONVERTER_interval_to_tabix_0 | 2020-09-01 |3.0
1435 toolshed.g2.bx.psu.edu/repos/bgruening/keras_batch_models/keras_batch_models/0.5.0 | 2020-09-01 |3.0
1436 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_create_seurat_object/seurat_create_seurat_object/2.3.1+galaxy0 | 2020-09-01 |3.0
1437 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastx_wrapper/2.10.1+galaxy0 | 2020-09-01 |3.0
1438 toolshed.g2.bx.psu.edu/repos/devteam/vcftools_subset/vcftools_subset/0.1 | 2020-09-01 |3.0
1439 CONVERTER_interval_to_bgzip_0 | 2020-09-01 |3.0
1440 toolshed.g2.bx.psu.edu/repos/iuc/bp_genbank2gff3/bp_genbank2gff3/1.1 | 2020-09-01 |3.0
1441 toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_clustering/2.8.3.0 | 2020-09-01 |3.0
1442 toolshed.g2.bx.psu.edu/repos/devteam/vcftools_slice/vcftools_slice/0.1 | 2020-09-01 |3.0
1443 toolshed.g2.bx.psu.edu/repos/iuc/qiime_make_phylogeny/qiime_make_phylogeny/1.9.1.0 | 2020-09-01 |3.0
1444 toolshed.g2.bx.psu.edu/repos/ecology/spocc_occ/spocc_occ/0.9.0 | 2020-09-01 |3.0
1445 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/promoter2/0.0.12 | 2020-09-01 |3.0
1446 toolshed.g2.bx.psu.edu/repos/iuc/qiime_extract_barcodes/qiime_extract_barcodes/1.9.1.0 | 2020-09-01 |3.0
1447 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_cells/scanpy_filter_cells/1.6.0+galaxy0 | 2020-09-01 |3.0
1448 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_varextract/0.1.8_1 | 2020-09-01 |3.0
1449 toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/samtools_mpileup/0.0.1 | 2020-09-01 |3.0
1450 gff_filter_by_attribute | 2020-09-01 |3.0
1451 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.2 | 2020-09-01 |3.0
1452 toolshed.g2.bx.psu.edu/repos/rnateam/dorina/dorina_search/1.0.0 | 2020-09-01 |3.0
1453 toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.2 | 2020-09-01 |3.0
1454 toolshed.g2.bx.psu.edu/repos/iuc/length_and_gc_content/length_and_gc_content/0.1.1 | 2020-09-01 |3.0
1455 toolshed.g2.bx.psu.edu/repos/devteam/fasta_nucleotide_changer/cshl_fasta_nucleotides_changer/1.0.2 | 2020-09-01 |3.0
1456 toolshed.g2.bx.psu.edu/repos/bgruening/join_files_on_column_fuzzy/join_files_on_column_fuzzy/1.0.1 | 2020-09-01 |3.0
1457 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.3.2+galaxy1 | 2020-09-01 |3.0
1458 toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_groups/mothur_get_groups/1.39.5.0 | 2020-09-01 |3.0
1459 toolshed.g2.bx.psu.edu/repos/computationaltranscriptomics/glassgo/glassgo/1.5.2 | 2020-09-01 |3.0
1460 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_reducedim/monocle3_reduceDim/0.1.4+galaxy0 | 2020-09-01 |3.0
1461 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_create/monocle3_create/0.1.4+galaxy2 | 2020-09-01 |3.0
1462 toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.2 | 2020-09-01 |3.0
1463 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_remove_confounders/scanpy_remove_confounders/1.4.4.post1+galaxy3 | 2020-09-01 |3.0
1464 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca/2.3 | 2020-09-01 |3.0
1465 toolshed.g2.bx.psu.edu/repos/devteam/fastx_nucleotides_distribution/cshl_fastx_nucleotides_distribution/1.0.1 | 2020-09-01 |3.0
1466 toolshed.g2.bx.psu.edu/repos/galaxyp/mt2mq/mt2mq/1.1.0 | 2020-09-01 |3.0
1467 intermine | 2020-09-01 |3.0
1468 toolshed.g2.bx.psu.edu/repos/blankenberg/naive_variant_caller/naive_variant_caller/0.0.3 | 2020-09-01 |3.0
1469 toolshed.g2.bx.psu.edu/repos/devteam/data_manager_twobit_builder/twobit_builder_data_manager/0.0.4 | 2020-09-01 |3.0
1470 toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_bowtie2/0.22.1+galaxy2 | 2020-09-01 |3.0
1471 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2d+galaxy3 | 2020-09-01 |3.0
1472 CONVERTER_gff_to_interval_index_0 | 2020-09-01 |3.0
1473 toolshed.g2.bx.psu.edu/repos/devteam/cummerbund_to_tabular/cummerbund_to_cuffdiff/1.0.1 | 2020-09-01 |3.0
1474 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_normalize/scanpy_normalize/1.4.4.post1+galaxy3 | 2020-09-01 |3.0
1475 toolshed.g2.bx.psu.edu/repos/iuc/mummer_mummerplot/mummer_mummerplot/4.0.0beta2+galaxy0 | 2020-09-01 |3.0
1476 toolshed.g2.bx.psu.edu/repos/jjohnson/sqlite_to_tabular/sqlite_to_tabular/0.0.1 | 2020-09-01 |3.0
1477 toolshed.g2.bx.psu.edu/repos/iuc/roary/roary/3.12.0+galaxy0 | 2020-09-01 |3.0
1478 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_editconf/gmx_editconf/2019.1.4 | 2020-09-01 |3.0
1479 toolshed.g2.bx.psu.edu/repos/iuc/mothur_venn/mothur_venn/1.36.1.0 | 2020-09-01 |3.0
1480 toolshed.g2.bx.psu.edu/repos/tgac/miranda/miranda/3.3a | 2020-09-01 |3.0
1481 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_rmsd/bio3d_rmsd/2.3 | 2020-09-01 |3.0
1482 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: dotmatcher24/5.0.0.1 | 2020-09-01 |3.0
1483 toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/1.0.3 | 2020-09-01 |3.0
1484 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.2.6.2 | 2020-09-01 |3.0
1485 toolshed.g2.bx.psu.edu/repos/peterjc/seq_composition/seq_composition/0.0.5 | 2020-09-01 |3.0
1486 toolshed.g2.bx.psu.edu/repos/devteam/fastx_quality_statistics/cshl_fastx_quality_statistics/1.0.1 | 2020-09-01 |3.0
1487 toolshed.g2.bx.psu.edu/repos/gga/apollo_list_organism/list_organism/4.2.5 | 2020-09-01 |3.0
1488 toolshed.g2.bx.psu.edu/repos/iuc/qiime_filter_fasta/qiime_filter_fasta/1.9.1.0 | 2020-09-01 |3.0
1489 toolshed.g2.bx.psu.edu/repos/iuc/qiime_beta_diversity/qiime_beta_diversity/1.9.1.0 | 2020-09-01 |3.0
1490 toolshed.g2.bx.psu.edu/repos/devteam/correlation/cor2/1.0.0 | 2020-09-01 |3.0
1491 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.9+galaxy1 | 2020-09-01 |3.0
1492 toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/1.3.3.1 | 2020-09-01 |3.0
1493 toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_alignment/2.8.3.0 | 2020-09-01 |3.0
1494 toolshed.g2.bx.psu.edu/repos/rnateam/selectsequencesfrommsa/selectsequencesfrommsa/1.0.2 | 2020-09-01 |3.0
1495 toolshed.g2.bx.psu.edu/repos/galaxyp/proteomics_moff/proteomics_moff/2.0.3.0 | 2020-09-01 |3.0
1496 toolshed.g2.bx.psu.edu/repos/devteam/data_manager_fetch_genome_dbkeys_all_fasta/data_manager_fetch_genome_all_fasta_dbkey/0.0.2 | 2020-09-01 |3.0
1497 CONVERTER_gff_to_fli_0 | 2020-09-01 |3.0
1498 toolshed.g2.bx.psu.edu/repos/melpetera/corr_table/corrtable/0.0.0 | 2020-09-01 |3.0
1499 toolshed.g2.bx.psu.edu/repos/bgruening/plotly_parallel_coordinates_plot/plotly_parallel_coordinates_plot/0.1 | 2020-09-01 |3.0
1500 toolshed.g2.bx.psu.edu/repos/iuc/gffcompare/gffcompare/0.9.8 | 2020-09-01 |3.0
1501 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_BamIndexStats/1.56.0 | 2020-09-01 |3.0
1502 toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_groups/mothur_remove_groups/1.39.5.0 | 2020-09-01 |3.0
1503 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_rmsf/bio3d_rmsf/2.3 | 2020-09-01 |3.0
1504 toolshed.g2.bx.psu.edu/repos/peterjc/mummer/mummerplot_wrapper/0.0.7 | 2020-09-01 |3.0
1505 toolshed.g2.bx.psu.edu/repos/imgteam/overlay_segmentation_mask/ip_overlay_segmentation/0.0.6 | 2020-09-01 |3.0
1506 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_cluster_kegg/1.0.0 | 2020-09-01 |3.0
1507 toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnaup/viennarna_rnaup/2.2.10.0 | 2020-09-01 |3.0
1508 toolshed.g2.bx.psu.edu/repos/iuc/mothur_fastq_info/mothur_fastq_info/1.39.5.0 | 2020-09-01 |3.0
1509 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_concat/bcftools_concat/1.10 | 2020-09-01 |3.0
1510 toolshed.g2.bx.psu.edu/repos/iuc/trinity_super_transcripts/trinity_super_transcripts/2.9.1 | 2020-09-01 |3.0
1511 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_varreport/0.1.8_1 | 2020-09-01 |3.0
1512 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_bam2wig/2.6.4 | 2020-09-01 |3.0
1513 toolshed.g2.bx.psu.edu/repos/jjohnson/rsem/rsem_calculate_expression/1.1.17 | 2020-09-01 |3.0
1514 toolshed.g2.bx.psu.edu/repos/iuc/poretools_tabular/poretools_tabular/0.6.1a1.0 | 2020-09-01 |3.0
1515 toolshed.g2.bx.psu.edu/repos/devteam/picard/PicardASMetrics/1.56.0 | 2020-09-01 |3.0
1516 toolshed.g2.bx.psu.edu/repos/anton/vcf2tsv/vcf2tsv/0.0.1 | 2020-09-01 |3.0
1517 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: fuzznuc37/5.0.2 | 2020-09-01 |3.0
1518 toolshed.g2.bx.psu.edu/repos/iuc/describe_samples/describe_samples/2.8.4 | 2020-09-01 |3.0
1519 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multiintersectbed/2.29.2 | 2020-09-01 |3.0
1520 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_tableviewer/0.69.8+galaxy7 | 2020-09-01 |3.0
1521 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_wiggle_to_stacked/0.69.8+galaxy7 | 2020-09-01 |3.0
1522 secure_hash_message_digest | 2020-09-01 |3.0
1523 velvetg | 2020-09-01 |3.0
1524 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_rebase/0.1.8_1 | 2020-09-01 |3.0
1525 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: geecee41/5.0.0 | 2020-09-01 |3.0
1526 toolshed.g2.bx.psu.edu/repos/imgteam/coordinates_of_roi/ip_coordinates_of_roi/0.0.4 | 2020-09-01 |3.0
1527 gtf_filter_by_attribute_values_list | 2020-09-01 |3.0
1528 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_cells/scanpy_filter_cells/1.4.3+galaxy9 | 2020-09-01 |3.0
1529 toolshed.g2.bx.psu.edu/repos/devteam/gi2taxonomy/Fetch Taxonomic Ranks/1.1.0 | 2020-09-01 |3.0
1530 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_varcall/0.1.8_1 | 2020-09-01 |3.0
1531 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_norm/bcftools_norm/1.9+galaxy1 | 2020-09-01 |3.0
1532 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_covstats/0.1.8_1 | 2020-09-01 |3.0
1533 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/2.6.0.0 | 2020-09-01 |3.0
1534 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_predictd/2.1.1.20160309.1 | 2020-09-01 |3.0
1535 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpsift_vartype/4.3.1 | 2020-09-01 |3.0
1536 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/0.3.3 | 2020-09-01 |2.0
1537 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/0.4.1 | 2020-09-01 |2.0
1538 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/1.0.8.2 | 2020-09-01 |2.0
1539 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_mlocarna/locarna_best_subtree/0.3 | 2020-09-01 |2.0
1540 toolshed.g2.bx.psu.edu/repos/ecology/pampa_glmcomm/pampa_glmcomm/0.0.1 | 2020-09-01 |2.0
1541 toolshed.g2.bx.psu.edu/repos/galaxyp/reactome_pathwaymatcher/reactome_pathwaymatcher/1.9.1.3 | 2020-09-01 |2.0
1542 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_gc_bias/deeptools_compute_gc_bias/3.3.2.0.0 | 2020-09-01 |2.0
1543 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_normalise_data/scanpy_normalise_data/1.3.2+galaxy1 | 2020-09-01 |2.0
1544 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy7 | 2020-09-01 |2.0
1545 toolshed.g2.bx.psu.edu/repos/iuc/transit_gumbel/transit_gumbel/3.0.2+galaxy0 | 2020-09-01 |2.0
1546 toolshed.g2.bx.psu.edu/repos/bgruening/get_online_data/ctb_online_data_fetch/0.4 | 2020-09-01 |2.0
1547 toolshed.g2.bx.psu.edu/repos/iuc/sickle/sickle/1.33.2 | 2020-09-01 |2.0
1548 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.5+galaxy0 | 2020-09-01 |2.0
1549 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_nvt/gmx_nvt/2019.1 | 2020-09-01 |2.0
1550 toolshed.g2.bx.psu.edu/repos/bgruening/sailfish/sailfish/0.10.1.1 | 2020-09-01 |2.0
1551 toolshed.g2.bx.psu.edu/repos/devteam/vcfannotategenotypes/vcfannotategenotypes/1.0.0_rc3+galaxy0 | 2020-09-01 |2.0
1552 toolshed.g2.bx.psu.edu/repos/devteam/vcftools_annotate/vcftools_annotate/0.1 | 2020-09-01 |2.0
1553 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpSift_annotate/3.4 | 2020-09-01 |2.0
1554 sklearn_generalized_linear | 2020-09-01 |2.0
1555 toolshed.g2.bx.psu.edu/repos/iuc/snpsift_genesets/snpSift_geneSets/4.3.0 | 2020-09-01 |2.0
1556 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.3.2+galaxy1 | 2020-09-01 |2.0
1557 toolshed.g2.bx.psu.edu/repos/iuc/meme_psp_gen/meme_psp_gen/5.0.5.0 | 2020-09-01 |2.0
1558 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_read_quality/2.6.4 | 2020-09-01 |2.0
1559 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/2.2.1 | 2020-09-01 |2.0
1560 toolshed.g2.bx.psu.edu/repos/iuc/tximport/tximport/0.1 | 2020-09-01 |2.0
1561 toolshed.g2.bx.psu.edu/repos/devteam/lda_analysis/lda_analy1/1.0.1 | 2020-09-01 |2.0
1562 toolshed.g2.bx.psu.edu/repos/anton/vcfcombine/vcfcombine/0.0.1 | 2020-09-01 |2.0
1563 toolshed.g2.bx.psu.edu/repos/devteam/data_manager_bowtie2_index_builder/bowtie2_index_builder_data_manager/2.3.4.3 | 2020-09-01 |2.0
1564 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.3.2+galaxy1 | 2020-09-01 |2.0
1565 toolshed.g2.bx.psu.edu/repos/iuc/scater_filter/scater_filter/1.12.2 | 2020-09-01 |2.0
1566 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/2.4.0.1 | 2020-09-01 |2.0
1567 toolshed.g2.bx.psu.edu/repos/iuc/export2graphlan/export2graphlan/0.19 | 2020-09-01 |2.0
1568 toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_svg_depiction/openbabel_svg_depiction/3.1.1+galaxy0 | 2020-09-01 |2.0
1569 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.2.13 | 2020-09-01 |2.0
1570 toolshed.g2.bx.psu.edu/repos/iuc/idr/idr/2.0.3 | 2020-09-01 |2.0
1571 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/2.1.0 | 2020-09-01 |2.0
1572 toolshed.g2.bx.psu.edu/repos/rnateam/selectsequencesfrommsa/selectsequencesfrommsa/1.0.5 | 2020-09-01 |2.0
1573 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_procrad/stacks2_procrad/2.4+galaxy1 | 2020-09-01 |2.0
1574 toolshed.g2.bx.psu.edu/repos/devteam/vcftools_isec/vcftools_isec/0.1.1 | 2020-09-01 |2.0
1575 toolshed.g2.bx.psu.edu/repos/iuc/ivar_consensus/ivar_consensus/1.2.2+galaxy0 | 2020-09-01 |2.0
1576 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3 | 2020-09-01 |2.0
1577 toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_genprop/openbabel_genProp/3.1.1+galaxy0 | 2020-09-01 |2.0
1578 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.2.0 | 2020-09-01 |2.0
1579 toolshed.g2.bx.psu.edu/repos/iuc/gff_to_prot/gff_to_prot/3.0.2+galaxy0 | 2020-09-01 |2.0
1580 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.4 | 2020-09-01 |2.0
1581 toolshed.g2.bx.psu.edu/repos/iuc/mlst/mlst_list/2.19.0 | 2020-09-01 |2.0
1582 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.3+galaxy6 | 2020-09-01 |2.0
1583 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_nn_classifier/sklearn_nn_classifier/1.0.8.2 | 2020-09-01 |2.0
1584 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_genes/scanpy_filter_genes/1.3.2+galaxy1 | 2020-09-01 |2.0
1585 toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fastq/tabular_to_fastq/1.0.0 | 2020-09-01 |2.0
1586 toolshed.g2.bx.psu.edu/repos/iuc/enasearch_retrieve_data/enasearch_retrieve_data/0.1.1.0 | 2020-09-01 |2.0
1587 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_egquery/ncbi_eutils_egquery/1.2 | 2020-09-01 |2.0
1588 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_umap/scanpy_run_umap/1.4.3+galaxy9 | 2020-09-01 |2.0
1589 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.3.2+galaxy1 | 2020-09-01 |2.0
1590 toolshed.g2.bx.psu.edu/repos/devteam/weblogo3/rgweblogo3/3.5.0 | 2020-09-01 |2.0
1591 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_classification/cardinal_classification/1.12.1.3 | 2020-09-01 |2.0
1592 gff_to_sequence | 2020-09-01 |2.0
1593 toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_relabund/mothur_get_relabund/1.39.5.0 | 2020-09-01 |2.0
1594 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_cmfinder/cmFinder/0.3 | 2020-09-01 |2.0
1595 sequence_convert | 2020-09-01 |2.0
1596 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_junction_annotation/2.6.4.1 | 2020-09-01 |2.0
1597 toolshed.g2.bx.psu.edu/repos/melpetera/batchcorrection/Batch_correction/2.1.2 | 2020-09-01 |2.0
1598 toolshed.g2.bx.psu.edu/repos/iuc/bwameth/bwameth/0.2.0.3 | 2020-09-01 |2.0
1599 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_sortbed/2.27.0.0 | 2020-09-01 |2.0
1600 toolshed.g2.bx.psu.edu/repos/crs4/ssake/ssake/0.0.10 | 2020-09-01 |2.0
1601 toolshed.g2.bx.psu.edu/repos/tyty/structurefold/iterative_map_pipeline/1.0 | 2020-09-01 |2.0
1602 toolshed.g2.bx.psu.edu/repos/galaxyp/metaquantome_sample/metaquantome_sample/2.0.0-0 | 2020-09-01 |2.0
1603 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.3.2+galaxy0 | 2020-09-01 |2.0
1604 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.5+galaxy0 | 2020-09-01 |2.0
1605 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.5.2b-0 | 2020-09-01 |2.0
1606 toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnapaln/viennarna_rnapaln/2.2.10.0 | 2020-09-01 |2.0
1607 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_reldistbed/2.29.2 | 2020-09-01 |2.0
1608 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.69 | 2020-09-01 |2.0
1609 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/2.5.1.1.0 | 2020-09-01 |2.0
1610 toolshed.g2.bx.psu.edu/repos/iuc/cat_contigs/cat_contigs/5.0.3.1 | 2020-09-01 |2.0
1611 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/tmhmm2/0.0.16 | 2020-09-01 |2.0
1612 toolshed.g2.bx.psu.edu/repos/iuc/bio_hansel/bio_hansel/0.1.0 | 2020-09-01 |2.0
1613 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.3.0 | 2020-09-01 |2.0
1614 toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.1 | 2020-09-01 |2.0
1615 toolshed.g2.bx.psu.edu/repos/devteam/count_covariates/gatk_count_covariates/0.0.5 | 2020-09-01 |2.0
1616 toolshed.g2.bx.psu.edu/repos/iuc/vardict_java/vardict_java/1.7.0+galaxy0 | 2020-09-01 |2.0
1617 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_cells/scanpy_filter_cells/1.3.2+galaxy0 | 2020-09-01 |2.0
1618 wc_gnu | 2020-09-01 |2.0
1619 toolshed.g2.bx.psu.edu/repos/devteam/kraken2tax/Kraken2Tax/1.2 | 2020-09-01 |2.0
1620 toolshed.g2.bx.psu.edu/repos/galaxyp/bed_to_protein_map/bed_to_protein_map/0.1.0 | 2020-09-01 |2.0
1621 toolshed.g2.bx.psu.edu/repos/iuc/gfa_to_fa/gfa_to_fa/0.1.1 | 2020-09-01 |2.0
1622 gbk_to_orf | 2020-09-01 |2.0
1623 toolshed.g2.bx.psu.edu/repos/iuc/control_freec/control_freec/11.6+galaxy1 | 2020-09-01 |2.0
1624 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_tin/2.6.4.1 | 2020-09-01 |2.0
1625 toolshed.g2.bx.psu.edu/repos/bgruening/qed/ctb_silicos_qed/2019.03.1+galaxy0 | 2020-09-01 |2.0
1626 toolshed.g2.bx.psu.edu/repos/imgteam/2d_split_binaryimage_by_watershed/ip_2d_split_binaryimage_by_watershed/0.0.1 | 2020-09-01 |2.0
1627 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.6 | 2020-09-01 |2.0
1628 genbank_to_gff | 2020-09-01 |2.0
1629 toolshed.g2.bx.psu.edu/repos/iuc/poretools_nucdist/poretools_nucdist/0.6.1a1.0 | 2020-09-01 |2.0
1630 toolshed.g2.bx.psu.edu/repos/bgruening/keras_model_builder/keras_model_builder/0.5.0 | 2020-09-01 |2.0
1631 toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.1.1 | 2020-09-01 |2.0
1632 toolshed.g2.bx.psu.edu/repos/iuc/bctools_extract_barcodes/bctools_extract_barcodes/0.2.2 | 2020-09-01 |2.0
1633 toolshed.g2.bx.psu.edu/repos/imgteam/coordinates_of_roi/ip_coordinates_of_roi/0.0.3 | 2020-09-01 |2.0
1634 toolshed.g2.bx.psu.edu/repos/devteam/fastq_quality_boxplot/cshl_fastq_quality_boxplot/1.0.1 | 2020-09-01 |2.0
1635 toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/3.2+galaxy1 | 2020-09-01 |2.0
1636 toolshed.g2.bx.psu.edu/repos/iuc/gemini_amend/gemini_amend/0.20.1 | 2020-09-01 |2.0
1637 toolshed.g2.bx.psu.edu/repos/iuc/trinity/trinity/2.4.0.0 | 2020-09-01 |2.0
1638 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_data_exporter/cardinal_data_exporter/1.12.1.2 | 2020-09-01 |2.0
1639 toolshed.g2.bx.psu.edu/repos/iuc/poretools_stats/poretools_stats/0.6.1a1.0 | 2020-09-01 |2.0
1640 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.2.0 | 2020-09-01 |2.0
1641 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_rpstblastn_wrapper/2.10.1+galaxy0 | 2020-09-01 |2.0
1642 toolshed.g2.bx.psu.edu/repos/iuc/crossmap_gff/crossmap_gff/0.3.7 | 2020-09-01 |2.0
1643 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.3.2+galaxy1 | 2020-09-01 |2.0
1644 toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/0.2.2 | 2020-09-01 |2.0
1645 toolshed.g2.bx.psu.edu/repos/bgruening/plotly_ml_performance_plots/plotly_ml_performance_plots/0.2 | 2020-09-01 |2.0
1646 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.6.0+galaxy0 | 2020-09-01 |2.0
1647 deseq2_single | 2020-09-01 |2.0
1648 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_svm_classifier/sklearn_svm_classifier/1.0.8.1 | 2020-09-01 |2.0
1649 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.3.2+galaxy1 | 2020-09-01 |2.0
1650 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_lefse/mothur_make_lefse/1.39.5.0 | 2020-09-01 |2.0
1651 toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.1.1 | 2020-09-01 |2.0
1652 toolshed.g2.bx.psu.edu/repos/bgruening/replace_column_by_key_value_file/replace_column_with_key_value_file/0.1 | 2020-09-01 |2.0
1653 toolshed.g2.bx.psu.edu/repos/bebatut/group_humann2_uniref_abundances_to_go/group_humann2_uniref_abundances_to_go/1.2.3 | 2020-09-01 |2.0
1654 toolshed.g2.bx.psu.edu/repos/devteam/megablast_xml_parser/megablast_xml_parser/1.0.1 | 2020-09-01 |2.0
1655 toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster/mothur_cluster/1.39.5.0 | 2020-09-01 |2.0
1656 toolshed.g2.bx.psu.edu/repos/bgruening/get_pubchem/ctb_pubchem_download_as_smiles/0.3 | 2020-09-01 |2.0
1657 toolshed.g2.bx.psu.edu/repos/bgruening/nucleosome_prediction/Nucleosome/3.0 | 2020-09-01 |2.0
1658 toolshed.g2.bx.psu.edu/repos/devteam/freebayes_wrapper/freebayes_wrapper/0.5.0 | 2020-09-01 |2.0
1659 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.4.3+galaxy9 | 2020-09-01 |2.0
1660 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_umap/scanpy_run_umap/1.3.2+galaxy1 | 2020-09-01 |2.0
1661 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.2 | 2020-09-01 |2.0
1662 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.4.3+galaxy9 | 2020-09-01 |2.0
1663 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_find_clusters/seurat_find_clusters/2.3.1+galaxy1 | 2020-09-01 |2.0
1664 toolshed.g2.bx.psu.edu/repos/galaxyp/metagene_annotator/metagene_annotator/1.0.0 | 2020-09-01 |2.0
1665 toolshed.g2.bx.psu.edu/repos/imgteam/count_objects/ip_count_objects/0.0.4 | 2020-09-01 |2.0
1666 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_decoydatabase/DecoyDatabase/2.5+galaxy0 | 2020-09-01 |2.0
1667 toolshed.g2.bx.psu.edu/repos/ecology/pampa_communitymetrics/pampa_communitymetrics/0.0.1 | 2020-09-01 |2.0
1668 toolshed.g2.bx.psu.edu/repos/imgteam/2d_filter_segmentation_by_features/ip_2d_filter_segmentation_by_features/0.0.1 | 2020-09-01 |2.0
1669 toolshed.g2.bx.psu.edu/repos/bebatut/cdhit/cd_hit_est/1.3 | 2020-09-01 |2.0
1670 __FILTER_EMPTY_DATASETS__ | 2020-09-01 |2.0
1671 toolshed.g2.bx.psu.edu/repos/devteam/complement/gops_complement_1/0.0.1 | 2020-09-01 |2.0
1672 toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnapkplex/viennarna_rnapkplex/2.2.10.0 | 2020-09-01 |2.0
1673 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idscoreswitcher/IDScoreSwitcher/2.5+galaxy0 | 2020-09-01 |2.0
1674 toolshed.g2.bx.psu.edu/repos/tyty/structurefold/predict_pipeline/1.0 | 2020-09-01 |2.0
1675 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_learngraph/monocle3_learnGraph/0.1.4+galaxy0 | 2020-09-01 |2.0
1676 toolshed.g2.bx.psu.edu/repos/crs4/exomedepth/exomedepth/1.1.0 | 2020-09-01 |2.0
1677 toolshed.g2.bx.psu.edu/repos/iuc/stacks_denovomap/stacks_denovomap/1.46.0 | 2020-09-01 |2.0
1678 toolshed.g2.bx.psu.edu/repos/iuc/mothur_dist_seqs/mothur_dist_seqs/1.39.5.0 | 2020-09-01 |2.0
1679 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3k.0 | 2020-09-01 |2.0
1680 pyiron_meta | 2020-09-01 |2.0
1681 toolshed.g2.bx.psu.edu/repos/gga/apollo_create_account/create_account/4.2.5 | 2020-09-01 |2.0
1682 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicsummatrices/hicexplorer_hicsummatrices/3.4.3.0 | 2020-09-01 |2.0
1683 toolshed.g2.bx.psu.edu/repos/iuc/data_manager_star_index_builder/rna_star_index_builder_data_manager/2.7.4a | 2020-09-01 |2.0
1684 toolshed.g2.bx.psu.edu/repos/iuc/abricate/abricate_list/1.0.1 | 2020-09-01 |2.0
1685 toolshed.g2.bx.psu.edu/repos/bgruening/diff/diff/3.6+galaxy1 | 2020-09-01 |2.0
1686 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.1.0 | 2020-09-01 |2.0
1687 toolshed.g2.bx.psu.edu/repos/devteam/coverage/gops_coverage_1/1.0.0 | 2020-09-01 |2.0
1688 toolshed.g2.bx.psu.edu/repos/iuc/ont_fast5_api_multi_to_single_fast5/ont_fast5_api_multi_to_single_fast5/3.1.3+galaxy0 | 2020-09-01 |2.0
1689 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.6.0+galaxy0 | 2020-09-01 |2.0
1690 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_read_10x/scanpy_read_10x/1.3.2+galaxy0 | 2020-09-01 |2.0
1691 toolshed.g2.bx.psu.edu/repos/iuc/mothur_seq_error/mothur_seq_error/1.39.5.0 | 2020-09-01 |2.0
1692 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_denovomap/stacks2_denovomap/2.4+galaxy1 | 2020-09-01 |2.0
1693 toolshed.g2.bx.psu.edu/repos/iuc/heinz/heinz_visualization/0.1.1 | 2020-09-01 |2.0
1694 toolshed.g2.bx.psu.edu/repos/iuc/moabs/moabs/1.3.4.6+galaxy1 | 2020-09-01 |2.0
1695 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.0 | 2020-09-01 |2.0
1696 toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/0.1.6.0 | 2020-09-01 |2.0
1697 toolshed.g2.bx.psu.edu/repos/gga/apollo_create_or_update/create_or_update/4.2.5 | 2020-09-01 |2.0
1698 eden_sequence_converter | 2020-09-01 |2.0
1699 toolshed.g2.bx.psu.edu/repos/galaxyp/metaquantome_expand/metaquantome_expand/2.0.0-0 | 2020-09-01 |2.0
1700 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_generalized_linear/sklearn_generalized_linear/1.0.8.2 | 2020-09-01 |2.0
1701 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/3.4.1.0 | 2020-09-01 |2.0
1702 toolshed.g2.bx.psu.edu/repos/bgruening/keras_model_config/keras_model_config/0.5.0 | 2020-09-01 |1.0
1703 toolshed.g2.bx.psu.edu/repos/earlhaminst/hcluster_sg/hcluster_sg/0.5.1 | 2020-09-01 |1.0
1704 bed_to_bigBed | 2020-09-01 |1.0
1705 toolshed.g2.bx.psu.edu/repos/devteam/fastq_combiner/fastq_combiner/1.1.5 | 2020-09-01 |1.0
1706 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.4.3+galaxy9 | 2020-09-01 |1.0
1707 toolshed.g2.bx.psu.edu/repos/galaxyp/gffcompare_to_bed/gffcompare_to_bed/0.1.0 | 2020-09-01 |1.0
1708 toolshed.g2.bx.psu.edu/repos/bgruening/rnaz/rnaz/2.1.1 | 2020-09-01 |1.0
1709 toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans/align_back_trans/0.0.10 | 2020-09-01 |1.0
1710 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/freebayes-0.9.14 | 2020-09-01 |1.0
1711 toolshed.g2.bx.psu.edu/repos/bgruening/protein_properties/bg_protein_properties/0.1.0 | 2020-09-01 |1.0
1712 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_correlation/deeptools_plot_correlation/3.0.2.0 | 2020-09-01 |1.0
1713 toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.9.0.1 | 2020-09-01 |1.0
1714 toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.9.1 | 2020-09-01 |1.0
1715 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FilterSamReads/2.18.2.1 | 2020-09-01 |1.0
1716 toolshed.g2.bx.psu.edu/repos/yhoogstrate/segmentation_fold/smf_utils_find-boxes/smf-v1.7-0_utils-v2.1.1-1 | 2020-09-01 |1.0
1717 toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.0 | 2020-09-01 |1.0
1718 vcf_to_maf_customtrack1 | 2020-09-01 |1.0
1719 toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_count/mothur_merge_count/1.39.5.0 | 2020-09-01 |1.0
1720 toolshed.g2.bx.psu.edu/repos/iuc/mothur_filter_shared/mothur_filter_shared/1.39.5.0 | 2020-09-01 |1.0
1721 toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_remduplicates/openbabel_remDuplicates/3.1.1+galaxy0 | 2020-09-01 |1.0
1722 toolshed.g2.bx.psu.edu/repos/jjohnson/cdhit/cd_hit_protein/1.2 | 2020-09-01 |1.0
1723 __RELABEL_FROM_FILE__ | 2020-09-01 |1.0
1724 toolshed.g2.bx.psu.edu/repos/chemteam/biomd_extract_clusters/biomd_extract_clusters/0.1.5.2+galaxy0 | 2020-09-01 |1.0
1725 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_tile/0.69.8+galaxy7 | 2020-09-01 |1.0
1726 toolshed.g2.bx.psu.edu/repos/iuc/data_manager_hisat2_index_builder/hisat2_index_builder_data_manager/2.0.5 | 2020-09-01 |1.0
1727 toolshed.g2.bx.psu.edu/repos/rnateam/antarna/antarna/1.1 | 2020-09-01 |1.0
1728 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.5.2b-1 | 2020-09-01 |1.0
1729 toolshed.g2.bx.psu.edu/repos/devteam/vcftools_merge/vcftools_merge/0.1 | 2020-09-01 |1.0
1730 toolshed.g2.bx.psu.edu/repos/iuc/humann2_barplot/humann2_barplot/0.11.1.0 | 2020-09-01 |1.0
1731 toolshed.g2.bx.psu.edu/repos/iuc/gemini_interactions/gemini_interactions/0.20.1 | 2020-09-01 |1.0
1732 CONVERTER_bcf_uncompressed_to_bcf | 2020-09-01 |1.0
1733 toolshed.g2.bx.psu.edu/repos/iuc/gemini_pathways/gemini_pathways/0.20.1 | 2020-09-01 |1.0
1734 toolshed.g2.bx.psu.edu/repos/bgruening/enumerate_charges/enumerate_charges/2020.03.4+galaxy0 | 2020-09-01 |1.0
1735 toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_uchime/mothur_chimera_uchime/1.39.5.0 | 2020-09-01 |1.0
1736 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_ValidateSamFile/2.18.2.1 | 2020-09-01 |1.0
1737 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.4.3+galaxy9 | 2020-09-01 |1.0
1738 toolshed.g2.bx.psu.edu/repos/anton/vcfcheck/vcfcheck/0.0.1 | 2020-09-01 |1.0
1739 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_data_preprocess/sklearn_data_preprocess/1.0.8.2 | 2020-09-01 |1.0
1740 toolshed.g2.bx.psu.edu/repos/devteam/vcfcheck/vcfcheck/1.0.0_rc1+galaxy0 | 2020-09-01 |1.0
1741 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotsvl/hicexplorer_hicplotsvl/3.4.3.0 | 2020-09-01 |1.0
1742 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_links/2.29.2 | 2020-09-01 |1.0
1743 toolshed.g2.bx.psu.edu/repos/galaxyp/encyclopedia_prosit_csv_to_library/encyclopedia_prosit_csv_to_library/0.9.5.0 | 2020-09-01 |1.0
1744 toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_masking/2.8.3.0 | 2020-09-01 |1.0
1745 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/2.4.0.0 | 2020-09-01 |1.0
1746 toolshed.g2.bx.psu.edu/repos/bgruening/dotknot/dotknot/1.3.1 | 2020-09-01 |1.0
1747 toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.0.3+galaxy1 | 2020-09-01 |1.0
1748 toolshed.g2.bx.psu.edu/repos/iuc/ebi_search_rest_results/ebi_search_rest_results/0.1.1 | 2020-09-01 |1.0
1749 toolshed.g2.bx.psu.edu/repos/iuc/poretools_winner/poretools_winner/0.6.1a1.0 | 2020-09-01 |1.0
1750 toolshed.g2.bx.psu.edu/repos/iuc/nanocompore_db/nanocompore_db/1.0.0rc3.post2+galaxy2 | 2020-09-01 |1.0
1751 toolshed.g2.bx.psu.edu/repos/devteam/merge/gops_merge_1/1.0.0 | 2020-09-01 |1.0
1752 toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_pretty_report/0.16.3 | 2020-09-01 |1.0
1753 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.2.0 | 2020-09-01 |1.0
1754 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_diffexp/monocle3_diffExp/0.1.4+galaxy1 | 2020-09-01 |1.0
1755 toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_whitelist/umi_tools_whitelist/0.5.5.0 | 2020-09-01 |1.0
1756 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_histogram/ggplot2_histogram/2.2.1+galaxy0 | 2020-09-01 |1.0
1757 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: dotpath25/5.0.0.1 | 2020-09-01 |1.0
1758 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_combine/cardinal_combine/2.2.6.0 | 2020-09-01 |1.0
1759 toolshed.g2.bx.psu.edu/repos/iuc/poretools_yield_plot/poretools_yield_plot/0.6.1a1.0 | 2020-09-01 |1.0
1760 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.4.0.0 | 2020-09-01 |1.0
1761 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/1.0.8.2 | 2020-09-01 |1.0
1762 toolshed.g2.bx.psu.edu/repos/bgruening/repeat_masker/repeatmasker_wrapper/4.0.9 | 2020-09-01 |1.0
1763 srma_wrapper | 2020-09-01 |1.0
1764 toolshed.g2.bx.psu.edu/repos/iuc/vt_variant_tools/vt_normalize/0.1.0 | 2020-09-01 |1.0
1765 toolshed.g2.bx.psu.edu/repos/devteam/short_reads_trim_seq/trim_reads/1.0.0 | 2020-09-01 |1.0
1766 toolshed.g2.bx.psu.edu/repos/rnateam/atactk_trim_adapters/atactk_trim_adapters/0.1.6 | 2020-09-01 |1.0
1767 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_dim_plot/seurat_dim_plot/2.3.1+galaxy0 | 2020-09-01 |1.0
1768 toolshed.g2.bx.psu.edu/repos/ethevenot/transformation/Transformation/2.2.0 | 2020-09-01 |1.0
1769 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_run_tsne/seurat_run_tsne/2.3.1+galaxy1 | 2020-09-01 |1.0
1770 modENCODEworm | 2020-09-01 |1.0
1771 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_fingerprint/deeptools_plot_fingerprint/2.5.7.0 | 2020-09-01 |1.0
1772 toolshed.g2.bx.psu.edu/repos/iuc/qiime_pick_closed_reference_otus/qiime_pick_closed_reference_otus/1.9.1.0 | 2020-09-01 |1.0
1773 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergematrixbins/hicexplorer_hicmergematrixbins/2.1.0 | 2020-09-01 |1.0
1774 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_new_oscar/1.0.0 | 2020-09-01 |1.0
1775 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_pca/1.0.0 | 2020-09-01 |1.0
1776 codon_count | 2020-09-01 |1.0
1777 toolshed.g2.bx.psu.edu/repos/devteam/bamtools/bamtools/0.0.1 | 2020-09-01 |1.0
1778 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_partition/monocle3_partition/0.1.4+galaxy0 | 2020-09-01 |1.0
1779 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/bamleftalign/0.4 | 2020-09-01 |1.0
1780 toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/4.6.3 | 2020-09-01 |1.0
1781 toolshed.g2.bx.psu.edu/repos/imgteam/image_info/ip_imageinfo/0.2 | 2020-09-01 |1.0
1782 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.29.0 | 2020-09-01 |1.0
1783 toolshed.g2.bx.psu.edu/repos/devteam/kraken_report/kraken-mpa-report/1.2.3 | 2020-09-01 |1.0
1784 toolshed.g2.bx.psu.edu/repos/devteam/tophat_fusion_post/tophat_fusion_post/0.1 | 2020-09-01 |1.0
1785 toolshed.g2.bx.psu.edu/repos/iuc/idba_hybrid/idba_hybrid/1.1.3 | 2020-09-01 |1.0
1786 toolshed.g2.bx.psu.edu/repos/devteam/vcfcombine/vcfcombine/0.0.4 | 2020-09-01 |1.0
1787 toolshed.g2.bx.psu.edu/repos/galaxyp/metaquantome_filter/metaquantome_filter/2.0.0-0 | 2020-09-01 |1.0
1788 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_find_variable_genes/seurat_find_variable_genes/2.3.1+galaxy1 | 2020-09-01 |1.0
1789 toolshed.g2.bx.psu.edu/repos/bgruening/natural_product_likeness/ctb_np-likeness-calculator/2.1 | 2020-09-01 |1.0
1790 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_run_pca/seurat_run_pca/2.3.1+galaxy1 | 2020-09-01 |1.0
1791 toolshed.g2.bx.psu.edu/repos/earlhaminst/ensembl_get_feature_info/get_feature_info/0.1.2 | 2020-09-01 |1.0
1792 toolshed.g2.bx.psu.edu/repos/iuc/gprofiler_snpense/gprofiler_snpense/0.1.7+galaxy11 | 2020-09-01 |1.0
1793 toolshed.g2.bx.psu.edu/repos/iuc/metaeuk_easy_predict/metaeuk_easy_predict/2.ddf2742+galaxy0 | 2020-09-01 |1.0
1794 toolshed.g2.bx.psu.edu/repos/iuc/last/last_al/1021+galaxy1 | 2020-09-01 |1.0
1795 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefindermultiplex/FeatureFinderMultiplex/2.2.0 | 2020-09-01 |1.0
1796 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed_histogram/2.19.0 | 2020-09-01 |1.0
1797 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_rank_terms/1.1.0 | 2020-09-01 |1.0
1798 toolshed.g2.bx.psu.edu/repos/iuc/cutesv/cutesv/1.0.8+galaxy0 | 2020-09-01 |1.0
1799 CONVERTER_interval_to_bed6_0 | 2020-09-01 |1.0
1800 toolshed.g2.bx.psu.edu/repos/iuc/gemini_burden/gemini_burden/0.20.1 | 2020-09-01 |1.0
1801 toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnaplex/viennarna_rnaplex/2.2.10.0 | 2020-09-01 |1.0
1802 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicadjustmatrix/hicexplorer_hicadjustmatrix/3.4.3.0 | 2020-09-01 |1.0
1803 toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mergefa/1.3.1 | 2020-09-01 |1.0
1804 toolshed.g2.bx.psu.edu/repos/bgruening/rnaz_annotate/rnaz_annotate/2.1 | 2020-09-01 |1.0
1805 toolshed.g2.bx.psu.edu/repos/yhoogstrate/segmentation_fold/smf_utils_fix-fasta-headers/smf-v1.7-0_utils-v2.1.1-1 | 2020-09-01 |1.0
1806 toolshed.g2.bx.psu.edu/repos/iuc/mothur_split_groups/mothur_split_groups/1.39.5.0 | 2020-09-01 |1.0
1807 toolshed.g2.bx.psu.edu/repos/iuc/tsne/tsne/0.0.2 | 2020-09-01 |1.0
1808 toolshed.g2.bx.psu.edu/repos/iuc/ivar_variants/ivar_variants/1.2.2+galaxy0 | 2020-09-01 |1.0
1809 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_postprocessing/glob_report/0.4 | 2020-09-01 |1.0
1810 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/2.1.0 | 2020-09-01 |1.0
1811 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_find_markers/seurat_find_markers/2.3.1+galaxy1 | 2020-09-01 |1.0
1812 toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0.1 | 2020-09-01 |1.0
1813 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.2.0 | 2020-09-01 |1.0
1814 toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.12.0 | 2020-09-01 |1.0
1815 interactive_tool_fairdom_send | 2020-09-01 |1.0
1816 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/0.9 | 2020-09-01 |1.0
1817 toolshed.g2.bx.psu.edu/repos/devteam/vcf2pgsnp/vcf2pgSnp/1.0.0 | 2020-09-01 |1.0
1818 ucsc_table_direct_archaea1 | 2020-09-01 |1.0
1819 toolshed.g2.bx.psu.edu/repos/lecorguille/anova/abims_anova/1.2.1 | 2020-09-01 |1.0
1820 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.0.0 | 2020-09-01 |1.0
1821 toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/1.0.3.1 | 2020-09-01 |1.0
1822 toolshed.g2.bx.psu.edu/repos/iuc/stacks_populations/stacks_populations/1.46.0 | 2020-09-01 |1.0
1823 toolshed.g2.bx.psu.edu/repos/iuc/obi_ngsfilter/obi_ngsfilter/1.2.11 | 2020-09-01 |1.0
1824 toolshed.g2.bx.psu.edu/repos/ebi-gxa/ucsc_cell_browser/ucsc_cell_browser/0.5.43+galaxy1 | 2020-09-01 |1.0
1825 toolshed.g2.bx.psu.edu/repos/iuc/idba_ud/idba_ud/1.1.3+galaxy1 | 2020-09-01 |1.0
1826 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_msgfplusadapter/MSGFPlusAdapter/2.2.0 | 2020-09-01 |1.0
1827 toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnalalifold/viennarna_rnalalifold/2.2.10.0 | 2020-09-01 |1.0
1828 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_genes/scanpy_filter_genes/1.6.0+galaxy0 | 2020-09-01 |1.0
1829 interactive_tool_openrefine | 2020-09-01 |1.0
1830 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_prepocessing_for_mlocarna/preMloc/0.3 | 2020-09-01 |1.0
1831 toolshed.g2.bx.psu.edu/repos/iuc/picrust_compare_biom/picrust_compare_biom/1.1.1.0 | 2020-09-01 |1.0
1832 toolshed.g2.bx.psu.edu/repos/ecology/pampa_presabs/pampa_presabs/0.0.1 | 2020-09-01 |1.0
1833 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/wolf_psort/0.0.8 | 2020-09-01 |1.0
1834 toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_sharedseqs/mothur_get_sharedseqs/1.39.5.0 | 2020-09-01 |1.0
1835 mosaik_wrapper | 2020-09-01 |1.0
1836 toolshed.g2.bx.psu.edu/repos/imgteam/scale_image/ip_scale_image/0.4 | 2020-09-01 |1.0
1837 toolshed.g2.bx.psu.edu/repos/devteam/vcfannotate/vcfannotate/1.0.0_rc1+galaxy0 | 2020-09-01 |1.0
1838 toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.8+galaxy1 | 2020-09-01 |1.0
1839 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idscoreswitcher/IDScoreSwitcher/2.2.0 | 2020-09-01 |1.0
1840 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mapalignerspectrum/MapAlignerSpectrum/2.5+galaxy0 | 2020-09-01 |1.0
1841 toolshed.g2.bx.psu.edu/repos/iuc/scater_normalize/scater_normalize/1.12.2 | 2020-09-01 |1.0
1842 toolshed.g2.bx.psu.edu/repos/devteam/vcfcombine/vcfcombine/1.0.0_rc1+galaxy0 | 2020-09-01 |1.0
1843 PerM | 2020-09-01 |1.0
1844 toolshed.g2.bx.psu.edu/repos/galaxyp/msi_preprocessing/mass_spectrometry_imaging_preprocessing/1.10.0.4 | 2020-09-01 |1.0
1845 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.10 | 2020-09-01 |1.0
1846 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.4.6.p5 | 2020-09-01 |1.0
1847 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.2.0 | 2020-09-01 |1.0
1848 toolshed.g2.bx.psu.edu/repos/iuc/resize_coordinate_window/resize_coordinate_window/1.0.2 | 2020-09-01 |1.0
1849 toolshed.g2.bx.psu.edu/repos/devteam/fastx_renamer/cshl_fastx_renamer/0.0.14+galaxy1 | 2020-09-01 |1.0
1850 toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_comp/1.3.1 | 2020-09-01 |1.0
1851 toolshed.g2.bx.psu.edu/repos/iuc/gemini_lof_sieve/gemini_lof_sieve/0.20.1 | 2020-09-01 |1.0
1852 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_multi_bamqc/qualimap_multi_bamqc/2.2.2c | 2020-09-01 |1.0
1853 toolshed.g2.bx.psu.edu/repos/devteam/vcfbedintersect/vcfbedintersect/1.0.0_rc1+galaxy0 | 2020-09-01 |1.0
1854 toolshed.g2.bx.psu.edu/repos/chemteam/ambertools_antechamber/ambertools_antechamber/19.11 | 2020-09-01 |1.0
1855 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_read10x/seurat_read10x/2.3.1+galaxy1 | 2020-09-01 |1.0
1856 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idconflictresolver/IDConflictResolver/2.2.0 | 2020-09-01 |1.0
1857 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_filter_cells/seurat_filter_cells/2.3.1+galaxy1 | 2020-09-01 |1.0
1858 toolshed.g2.bx.psu.edu/repos/iuc/count_seqs/count_seqs/1.9.1.0 | 2020-09-01 |1.0
1859 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.0.3 | 2020-09-01 |1.0
1860 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_preprocess/monocle3_preprocess/0.1.4+galaxy0 | 2020-09-01 |1.0
1861 toolshed.g2.bx.psu.edu/repos/iuc/meme_chip/meme_chip/4.11.2 | 2020-09-01 |1.0
1862 toolshed.g2.bx.psu.edu/repos/iuc/humann2_genefamilies_genus_level/humann2_genefamilies_genus_level/0.11.1.0 | 2020-09-01 |1.0
1863 toolshed.g2.bx.psu.edu/repos/iuc/phyml/phyml/3.3.20190909 | 2020-09-01 |1.0
1864 toolshed.g2.bx.psu.edu/repos/ecology/regionalgam_flight_curve/regionalgam_flight_curve/1.5 | 2020-09-01 |1.0
1865 toolshed.g2.bx.psu.edu/repos/iuc/structure/structure/2.3.4 | 2020-09-01 |1.0
1866 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicbuildmatrix/hicexplorer_hicbuildmatrix/2.1.0 | 2020-09-01 |1.0
1867 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_normalise_data/scanpy_normalise_data/1.4.3+galaxy9 | 2020-09-01 |1.0
1868 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_npt/gmx_npt/2018.2 | 2020-09-01 |1.0
1869 toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_addh/openbabel_addh/3.1.1+galaxy0 | 2020-09-01 |1.0
1870 toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.1.0 | 2020-09-01 |1.0
1871 toolshed.g2.bx.psu.edu/repos/iuc/last/last_train/1021+galaxy1 | 2020-09-01 |1.0
1872 toolshed.g2.bx.psu.edu/repos/devteam/gffread/gffread/2.2.1.0 | 2020-09-01 |1.0
1873 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplottads/hicexplorer_hicplottads/2.1.0 | 2020-09-01 |1.0
1874 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_regress_variable/scanpy_regress_variable/1.4.3+galaxy9 | 2020-09-01 |1.0
1875 toolshed.g2.bx.psu.edu/repos/ebi-gxa/droplet_barcode_plot/_dropletBarcodePlot/1.6.1+galaxy2 | 2020-09-01 |1.0
1876 toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.10 | 2020-09-01 |1.0
1877 toolshed.g2.bx.psu.edu/repos/devteam/vcfcheck/vcfcheck/1.0.0_rc3+galaxy0 | 2020-09-01 |1.0
1878 toolshed.g2.bx.psu.edu/repos/devteam/weblogo3/rgweblogo3/0.4 | 2020-09-01 |1.0
1879 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CleanSam/2.18.2.1 | 2020-09-01 |1.0
1880 toolshed.g2.bx.psu.edu/repos/iuc/humann2_join_tables/humann2_join_tables/0.11.1.1 | 2020-09-01 |1.0
1881 toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin/0.14.1.2+galaxy1 | 2020-09-01 |1.0
1882 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: merger54/5.0.0.1 | 2020-09-01 |1.0
1883 toolshed.g2.bx.psu.edu/repos/iuc/onto_tk_term_id_vs_term_name/onto_tk_term_id_vs_term_name/1.45.0 | 2020-09-01 |1.0
1884 CONVERTER_maf_to_interval_0 | 2020-09-01 |1.0
1885 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peptideindexer/PeptideIndexer/2.2.0 | 2020-09-01 |1.0
1886 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.9+galaxy1 | 2020-09-01 |1.0
1887 toolshed.g2.bx.psu.edu/repos/bonsai/sortmerna/merged_paired_reads_wrapper/1.0 | 2020-09-01 |1.0
1888 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_gstacks/stacks2_gstacks/2.4+galaxy1 | 2020-09-01 |1.0
1889 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.2.0.1 | 2020-09-01 |1.0
1890 toolshed.g2.bx.psu.edu/repos/iuc/gemini_fusions/gemini_fusions/0.20.1 | 2020-09-01 |1.0
1891 toolshed.g2.bx.psu.edu/repos/iuc/crossmap_bed/crossmap_bed/0.3.7 | 2020-09-01 |1.0
1892 toolshed.g2.bx.psu.edu/repos/sauria/hifive/hifive/0.1.0 | 2020-09-01 |1.0
1893 toolshed.g2.bx.psu.edu/repos/iuc/edger/edger/3.16.5 | 2020-09-01 |1.0
1894 toolshed.g2.bx.psu.edu/repos/rnateam/rcas/rcas/1.5.4 | 2020-09-01 |1.0
1895 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.1.0 | 2020-09-01 |1.0
1896 toolshed.g2.bx.psu.edu/repos/bgruening/crispr_recognition_tool/crispr_recognition_tool/1.2.0 | 2020-09-01 |1.0
1897 CONVERTER_cram_to_bam_0 | 2020-09-01 |1.0
1898 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_map/2.29.2.2 | 2020-09-01 |1.0
1899 toolshed.g2.bx.psu.edu/repos/iuc/mothur_phylotype/mothur_phylotype/1.39.5.0 | 2020-09-01 |1.0
1900 toolshed.g2.bx.psu.edu/repos/chemteam/md_converter/md_slicer/1.9.3 | 2020-09-01 |1.0
1901 toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_seqs/mothur_get_seqs/1.39.5.0 | 2020-09-01 |1.0
1902 toolshed.g2.bx.psu.edu/repos/iuc/roary/roary/0.1.0 | 2020-09-01 |1.0
1903 toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/species_tree_generator/3.0.0b35 | 2020-09-01 |1.0
1904 toolshed.g2.bx.psu.edu/repos/iuc/humann2_reduce_table/humann2_reduce_table/0.11.1.0 | 2020-09-01 |1.0
1905 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/wolf_psort/0.0.6 | 2020-09-01 |1.0
1906 toolshed.g2.bx.psu.edu/repos/bgruening/bamhash/bamhash/1.1 | 2020-09-01 |1.0
1907 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_train_test_eval/sklearn_train_test_eval/1.0.8.2 | 2020-09-01 |1.0
1908 toolshed.g2.bx.psu.edu/repos/iuc/mothur_list_seqs/mothur_list_seqs/1.39.5.0 | 2020-09-01 |1.0
1909 toolshed.g2.bx.psu.edu/repos/imgteam/imagej2_math/imagej2_math/3.0.0 | 2020-09-01 |1.0
1910 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.67 | 2020-09-01 |1.0
1911 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/2.1.0 | 2020-09-01 |1.0
1912 gff_filter_by_feature_count | 2020-09-01 |1.0
1913 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_proteinquantifier/ProteinQuantifier/2.2.0 | 2020-09-01 |1.0
1914 raceid_main | 2020-09-01 |1.0
1915 toolshed.g2.bx.psu.edu/repos/bgruening/cp_measure_object_size_shape/cp_measure_object_size_shape/3.1.9 | 2020-09-01 |1.0
1916 toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.6.0 | 2020-09-01 |1.0
1917 toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_deinterlacer/fastq_paired_end_deinterlacer/1.1.2 | 2020-09-01 |1.0
1918 toolshed.g2.bx.psu.edu/repos/bgruening/keras_train_and_eval/keras_train_and_eval/1.0.8.2 | 2020-09-01 |1.0
1919 toolshed.g2.bx.psu.edu/repos/bgruening/sucos_max_score/sucos_max_score/2020.03.4+galaxy0 | 2020-09-01 |1.0
1920 toolshed.g2.bx.psu.edu/repos/gga/apollo_feat_from_gff3/feat_from_gff3/4.2.5 | 2020-09-01 |1.0
1921 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_slopbed/2.27.0.0 | 2020-09-01 |1.0
1922 toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnainverse/viennarna_rnainverse/2.2.10.0 | 2020-09-01 |1.0
1923 CONVERTER_Bam_Bai_0 | 2020-09-01 |1.0
1924 toolshed.g2.bx.psu.edu/repos/bgruening/xchem_transfs_scoring/xchem_transfs_scoring/0.4.0 | 2020-09-01 |1.0
1925 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.10 | 2020-09-01 |1.0
1926 toolshed.g2.bx.psu.edu/repos/iuc/crossmap_bam/crossmap_bam/0.3.7 | 2020-09-01 |1.0
1927 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: garnier40/5.0.0 | 2020-09-01 |1.0
1928 toolshed.g2.bx.psu.edu/repos/bgruening/ctb_frankenstein_ligand/ctb_frankenstein_ligand/2013.1-0+galaxy0 | 2020-09-01 |1.0
1929 toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_compound_convert/openbabel_compound_convert/2.4.2.2.0 | 2020-09-01 |1.0
1930 toolshed.g2.bx.psu.edu/repos/ebi-gxa/retrieve_scxa/retrieve_scxa/v0.0.1+galaxy1 | 2020-09-01 |1.0
1931 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/1.0.2.29--1 | 2020-09-01 |1.0
1932 toolshed.g2.bx.psu.edu/repos/devteam/vcfsort/vcfsort/1.0.0_rc3+galaxy0 | 2020-09-01 |1.0
1933 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: plotcon75/5.0.0.1 | 2020-09-01 |1.0
1934 toolshed.g2.bx.psu.edu/repos/chemteam/biomd_neqgamma/biomd_neqgamma/0.1.5.2+galaxy0 | 2020-09-01 |1.0
1935 toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_endtoend/mdanalysis_endtoend/1.0.0+galaxy0 | 2020-09-01 |1.0
1936 toolshed.g2.bx.psu.edu/repos/iuc/seq2hla/seq2hla/2.2.0 | 2020-09-01 |1.0
1937 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.5+galaxy0 | 2020-09-01 |1.0
1938 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/2.9.0 | 2020-09-01 |1.0
1939 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/0.2 | 2020-09-01 |1.0
1940 toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnaeval/viennarna_rnaeval/2.2.10.0 | 2020-09-01 |1.0
1941 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaverageregions/hicexplorer_hicaverageregions/3.4.3.0 | 2020-09-01 |1.0
1942 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: backtranseq2/6.6.0 | 2020-09-01 |1.0
1943 toolshed.g2.bx.psu.edu/repos/rnateam/mlocarna/mlocarna/1.8.12.0 | 2020-09-01 |1.0
1944 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_classification/cardinal_classification/2.6.0.0 | 2020-09-01 |1.0
1945 toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse_to_standalone/1.16.9+galaxy0 | 2020-09-01 |1.0
1946 toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_hbonds/mdanalysis_hbonds/1.0.0+galaxy0 | 2020-09-01 |1.0
1947 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_numeric_clustering/sklearn_numeric_clustering/1.0.0.4 | 2020-09-01 |1.0
1948 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.6.0+galaxy0 | 2020-09-01 |1.0
1949 toolshed.g2.bx.psu.edu/repos/iuc/kobas/kobas_annotate/0.4 | 2020-09-01 |1.0
1950 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_info/0.1.8_1 | 2020-09-01 |1.0
1951 toolshed.g2.bx.psu.edu/repos/ecology/pampa_glmsp/pampa_glmsp/0.0.1 | 2020-09-01 |1.0
1952 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_normalise_data/seurat_normalise_data/2.3.1+galaxy1 | 2020-09-01 |1.0
1953 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.2.0 | 2020-09-01 |1.0
1954 toolshed.g2.bx.psu.edu/repos/rnateam/structure_to_gspan/structure_to_gspan/0.3 | 2020-09-01 |1.0
1955 toolshed.g2.bx.psu.edu/repos/iuc/humann2_unpack_pathways/humann2_unpack_pathways/0.11.1.0 | 2020-09-01 |1.0
1956 toolshed.g2.bx.psu.edu/repos/iuc/gatk4_mutect2/gatk4_mutect2/4.1.4.0+galaxy0 | 2020-09-01 |1.0
1957 svm_classifier | 2020-09-01 |1.0
1958 toolshed.g2.bx.psu.edu/repos/bgruening/cp_export_to_spreadsheet/cp_export_to_spreadsheet/3.1.9 | 2020-09-01 |1.0
1959 toolshed.g2.bx.psu.edu/repos/iuc/trinity_analyze_diff_expr/trinity_analyze_diff_expr/2.8.4+galaxy1 | 2020-09-01 |1.0
1960 fragmenter | 2020-09-01 |1.0
1961 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/NSPDK_candidateClust/9.2.2 | 2020-09-01 |1.0
1962 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_preprocessing/preproc/0.4 | 2020-09-01 |1.0
1963 toolshed.g2.bx.psu.edu/repos/iuc/gemini_roh/gemini_roh/0.20.1 | 2020-09-01 |1.0
1964 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_highresprecursormasscorrector/HighResPrecursorMassCorrector/2.2.0 | 2020-09-01 |1.0
1965 toolshed.g2.bx.psu.edu/repos/blankenberg/naive_variant_caller/naive_variant_caller/0.0.1 | 2020-09-01 |1.0
1966 toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.1.5+galaxy1 | 2020-09-01 |1.0
1967 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_correlation/deeptools_plot_correlation/2.5.7.0 | 2020-09-01 |1.0
1968 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_einfo/ncbi_eutils_einfo/1.2 | 2020-09-01 |1.0
1969 toolshed.g2.bx.psu.edu/repos/iuc/heinz/heinz_bum/1.0 | 2020-09-01 |1.0
1970 toolshed.g2.bx.psu.edu/repos/devteam/vcffixup/vcffixup/1.0.0_rc3+galaxy0 | 2020-09-01 |1.0
1971 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_multi_bam_summary/deeptools_multi_bam_summary/2.5.7.0 | 2020-09-01 |1.0
1972 toolshed.g2.bx.psu.edu/repos/earlhaminst/smina/smina/1.0 | 2020-09-01 |1.0
1973 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileconverter/FileConverter/2.1.0 | 2020-09-01 |1.0
1974 toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.2.0 | 2020-09-01 |1.0
1975 toolshed.g2.bx.psu.edu/repos/devteam/kraken_report/kraken-mpa-report/1.1.1 | 2020-09-01 |1.0
1976 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_build_pipeline/sklearn_build_pipeline/0.9 | 2020-09-01 |1.0
1977 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/nspdk_sparse/9.2.2 | 2020-09-01 |1.0
1978 toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy1 | 2020-09-01 |1.0
1979 toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mergepe/1.3.1 | 2020-09-01 |1.0
1980 toolshed.g2.bx.psu.edu/repos/devteam/vcfbedintersect/vcfbedintersect/1.0.0_rc3+galaxy0 | 2020-09-01 |1.0
1981 qual_stats_boxplot | 2020-09-01 |1.0
1982 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.11.0 | 2020-09-01 |1.0
1983 interactive_tool_askomics | 2020-09-01 |1.0
1984 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_scale_data/seurat_scale_data/2.3.1+galaxy1 | 2020-09-01 |1.0
1985 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_export_cellbrowser/seurat_export_cellbrowser/2.3.1+galaxy0 | 2020-09-01 |1.0
1986 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_model_validation/sklearn_model_validation/1.0.8.2 | 2020-09-01 |1.0
1987 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_genes/scanpy_filter_genes/1.4.3+galaxy9 | 2020-09-01 |1.0
1988 toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_slayer/mothur_chimera_slayer/1.39.5.0 | 2020-09-01 |1.0
1989 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_ligand/prepare_ligand/1.5.7+galaxy0 | 2020-09-01 |1.0
1990 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_train_test_split/sklearn_train_test_split/1.0.8.2 | 2020-09-01 |1.0
1991 tombo_text_output | 2020-09-01 |1.0
1992 hgv_linkToGProfile | 2020-09-01 |1.0
1993 CONVERTER_wiggle_to_interval_0 | 2020-09-01 |1.0
1994 toolshed.g2.bx.psu.edu/repos/iuc/valet/valet/1.0.0 | 2020-09-01 |1.0
1995 toolshed.g2.bx.psu.edu/repos/nml/sistr_cmd/sistr_cmd/1.0.2 | 2020-09-01 |1.0
1996 toolshed.g2.bx.psu.edu/repos/devteam/vcfaddinfo/vcfaddinfo/1.0.0_rc1+galaxy0 | 2020-09-01 |1.0
1997 toolshed.g2.bx.psu.edu/repos/iuc/ngsutils_bam_filter/ngsutils_bam_filter/0.5.7.0 | 2020-09-01 |1.0
1998 toolshed.g2.bx.psu.edu/repos/devteam/fastqtofasta/fastq_to_fasta_python/1.0.0 | 2020-09-01 |1.0
1999 toolshed.g2.bx.psu.edu/repos/earlhaminst/ensembl_get_sequences/get_sequences/0.1.2 | 2020-09-01 |1.0
2000 toolshed.g2.bx.psu.edu/repos/bgruening/rxdock_rbcavity/rxdock_rbcavity/0.1.5 | 2020-09-01 |1.0
2001 (51301 rows)||