view test-data/test_tool_usage @ 6:e94dc7945639 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/recommendation_training/tools/tool_recommendation_model commit 24bab7a797f53fe4bcc668b18ee0326625486164
author bgruening
date Sun, 16 Oct 2022 11:52:10 +0000
parents 4f7e6612906b
children
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 toolshed.g2.bx.psu.edu/repos/bgruening/sdf_to_tab/sdf_to_tab/2020.03.4+galaxy0                                                                      | 2022-09-01 |63928.0
 __DATA_FETCH__                                                                                                                                      | 2022-09-01 |32104.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.73+galaxy0                                                                                     | 2022-09-01 |6885.0
 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_filter/4.3+t.galaxy1                                                                               | 2022-09-01 |3042.0
 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2                                                                     | 2022-09-01 |2661.0
 toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.3.1                                                                                           | 2022-09-01 |2279.0
 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.1+galaxy2                                                                          | 2022-09-01 |2077.0
 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy1                                                                              | 2022-09-01 |1898.0
 toolshed.g2.bx.psu.edu/repos/rnateam/mafft/rbc_mafft/7.505+galaxy0                                                                                  | 2022-09-01 |1806.0
 Cut1                                                                                                                                                | 2022-09-01 |1726.0
 toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.1.1+galaxy1                                                                                      | 2022-09-01 |1693.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1                                                                                     | 2022-09-01 |1683.0
 CONVERTER_gz_to_uncompressed                                                                                                                        | 2022-09-01 |1656.0
 toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0                                                                                         | 2022-09-01 |1584.0
 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_annotate/bcftools_annotate/1.10                                                                           | 2022-09-01 |1550.0
 toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.6                                                                                 | 2022-09-01 |1524.0
 Filter1                                                                                                                                             | 2022-09-01 |1463.0
 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.24+galaxy0                                                                                     | 2022-09-01 |1397.0
 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy0                                                                                  | 2022-09-01 |1345.0
 Grouping1                                                                                                                                           | 2022-09-01 |1315.0
 toolshed.g2.bx.psu.edu/repos/pjbriggs/trimmomatic/trimmomatic/0.38.1                                                                                | 2022-09-01 |1315.0
 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.2                                                                                           | 2022-09-01 |1257.0
 toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.14.6+galaxy1                                                                                      | 2022-09-01 |1214.0
 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_filter/lofreq_filter/2.1.5+galaxy0                                                                          | 2022-09-01 |1196.0
 Remove beginning1                                                                                                                                   | 2022-09-01 |1162.0
 toolshed.g2.bx.psu.edu/repos/iuc/samtools_fastx/samtools_fastx/1.9+galaxy1                                                                          | 2022-09-01 |1141.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcfvcfintersect/vcfvcfintersect/1.0.0_rc3+galaxy0                                                              | 2022-09-01 |1137.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastqtofasta/fastq_to_fasta_python/1.1.5                                                                       | 2022-09-01 |1073.0
 interactive_tool_phinch                                                                                                                             | 2022-09-01 |1049.0
 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_viterbi/lofreq_viterbi/2.1.5+galaxy0                                                                        | 2022-09-01 |1046.0
 toolshed.g2.bx.psu.edu/repos/iuc/datamash_reverse/datamash_reverse/1.1.0+galaxy2                                                                    | 2022-09-01 |1043.0
 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy0                                                                    | 2022-09-01 |1033.0
 toolshed.g2.bx.psu.edu/repos/iuc/biom_convert/biom_convert/2.1.12+galaxy1                                                                           | 2022-09-01 |1031.0
 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.4.5+galaxy1                                                                                  | 2022-09-01 |998.0
 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.2.1+galaxy1                                                                                        | 2022-09-01 |986.0
 toolshed.g2.bx.psu.edu/repos/iuc/read_it_and_keep/read_it_and_keep/0.2.2+galaxy0                                                                    | 2022-09-01 |954.0
 toolshed.g2.bx.psu.edu/repos/devteam/fasta_to_tabular/fasta2tab/1.1.0                                                                               | 2022-09-01 |932.0
 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_extractFields/4.3+t.galaxy0                                                                        | 2022-09-01 |921.0
 toolshed.g2.bx.psu.edu/repos/iuc/table_compute/table_compute/1.2.4+galaxy0                                                                          | 2022-09-01 |919.0
 toolshed.g2.bx.psu.edu/repos/iuc/freyja_demix/freyja_demix/1.3.8+galaxy0                                                                            | 2022-09-01 |893.0
 toolshed.g2.bx.psu.edu/repos/saskia-hiltemann/krona_text/krona-text/1                                                                               | 2022-09-01 |887.0
 toolshed.g2.bx.psu.edu/repos/iuc/snpeff_sars_cov_2/snpeff_sars_cov_2/4.5covid19                                                                     | 2022-09-01 |839.0
 toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.2+galaxy2                                                                    | 2022-09-01 |829.0
 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.0+galaxy0                                                                                 | 2022-09-01 |820.0
 toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy2                                                                            | 2022-09-01 |815.0
 toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.3.1+galaxy2                                                                                  | 2022-09-01 |803.0
 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2d+galaxy3                                                                       | 2022-09-01 |802.0
 toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.20.1+galaxy0                                                                                         | 2022-09-01 |796.0
 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2c+galaxy1                                                                       | 2022-09-01 |782.0
 __FILTER_FAILED_DATASETS__                                                                                                                          | 2022-09-01 |771.0
 toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.3.1+galaxy2                                                                    | 2022-09-01 |761.0
 toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/2.0.8_beta+galaxy0                                                                                 | 2022-09-01 |750.0
 toolshed.g2.bx.psu.edu/repos/iuc/abricate/abricate/1.0.1                                                                                            | 2022-09-01 |717.0
 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy0                                                                                       | 2022-09-01 |710.0
 Grep1                                                                                                                                               | 2022-09-01 |693.0
 toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.6.7+galaxy0                                                                        | 2022-09-01 |687.0
 __SET_METADATA__                                                                                                                                    | 2022-09-01 |617.0
 toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.8.0                                                                                        | 2022-09-01 |565.0
 toolshed.g2.bx.psu.edu/repos/devteam/fasta_to_tabular/fasta2tab/1.1.1                                                                               | 2022-09-01 |562.0
 toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fasta/tab2fasta/1.1.1                                                                               | 2022-09-01 |560.0
 toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.1.7+galaxy1                                                                                  | 2022-09-01 |552.0
 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.3                                                                          | 2022-09-01 |501.0
 cat1                                                                                                                                                | 2022-09-01 |498.0
 toolshed.g2.bx.psu.edu/repos/iuc/filter_tabular/filter_tabular/2.0.0                                                                                | 2022-09-01 |483.0
 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_infer_experiment/2.6.4.1                                                                            | 2022-09-01 |478.0
 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.7+galaxy2                                                                                    | 2022-09-01 |476.0
 toolshed.g2.bx.psu.edu/repos/iuc/humann/humann/3.0.0+galaxy1                                                                                        | 2022-09-01 |450.0
 join1                                                                                                                                               | 2022-09-01 |402.0
 CONVERTER_fastq_to_fqtoc0                                                                                                                           | 2022-09-01 |400.0
 toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/2.11.0+galaxy1                                                                              | 2022-09-01 |390.0
 toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.36.2+galaxy1                                                                                   | 2022-09-01 |363.0
 toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.3                                                                                            | 2022-09-01 |344.0
 ebi_sra_main                                                                                                                                        | 2022-09-01 |344.0
 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.5.1.0.0                                                      | 2022-09-01 |339.0
 toolshed.g2.bx.psu.edu/repos/nml/ectyper/ectyper/1.0.0                                                                                              | 2022-09-01 |335.0
 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.5.1.0.0                                                  | 2022-09-01 |327.0
 toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.9.1+galaxy1                                                                         | 2022-09-01 |326.0
 toolshed.g2.bx.psu.edu/repos/devteam/clustalw/clustalw/2.1                                                                                          | 2022-09-01 |324.0
 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/1.1.3                                                                    | 2022-09-01 |322.0
 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SamToFastq/2.18.2.2                                                                              | 2022-09-01 |298.0
 toolshed.g2.bx.psu.edu/repos/iuc/b2btools_single_sequence/b2btools_single_sequence/3.0.5+galaxy0                                                    | 2022-09-01 |289.0
 toolshed.g2.bx.psu.edu/repos/devteam/concat/gops_concat_1/1.0.1                                                                                     | 2022-09-01 |283.0
 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.10+galaxy1                                                                 | 2022-09-01 |282.0
 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_heatmap/deeptools_plot_heatmap/3.5.1.0.1                                                      | 2022-09-01 |282.0
 toolshed.g2.bx.psu.edu/repos/devteam/merge/gops_merge_1/1.0.0                                                                                       | 2022-09-01 |281.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.29.2                                                                         | 2022-09-01 |281.0
 toolshed.g2.bx.psu.edu/repos/devteam/subtract/gops_subtract_1/1.0.0                                                                                 | 2022-09-01 |281.0
 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.3+T.galaxy1                                                                                        | 2022-09-01 |279.0
 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.17.1                                                                                           | 2022-09-01 |276.0
 toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.4                                                                      | 2022-09-01 |271.0
 toolshed.g2.bx.psu.edu/repos/rnateam/sortmerna/bg_sortmerna/2.1b.6                                                                                  | 2022-09-01 |269.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_interlacer/fastq_paired_end_interlacer/1.2.0.1+galaxy0                                        | 2022-09-01 |253.0
 toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy0                                                                                          | 2022-09-01 |240.0
 toolshed.g2.bx.psu.edu/repos/iuc/humann2/humann2/0.11.1.3                                                                                           | 2022-09-01 |239.0
 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/3.1.1+galaxy1                                                                    | 2022-09-01 |236.0
 toolshed.g2.bx.psu.edu/repos/iuc/limma_voom/limma_voom/3.50.1+galaxy0                                                                               | 2022-09-01 |231.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastx_quality_statistics/cshl_fastx_quality_statistics/1.0.1                                                   | 2022-09-01 |228.0
 __UNZIP_COLLECTION__                                                                                                                                | 2022-09-01 |223.0
 toolshed.g2.bx.psu.edu/repos/iuc/annotatemyids/annotatemyids/3.14.0+galaxy0                                                                         | 2022-09-01 |223.0
 toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.2.2+galaxy1                                                                                  | 2022-09-01 |222.0
 toolshed.g2.bx.psu.edu/repos/iuc/cooc_mutbamscan/cooc_mutbamscan/0.2+galaxy0                                                                        | 2022-09-01 |219.0
 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_bamqc/qualimap_bamqc/2.2.2c                                                                               | 2022-09-01 |218.0
 toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_extract/umi_tools_extract/1.1.2+galaxy2                                                                  | 2022-09-01 |218.0
 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_geneBody_coverage/2.6.4.3                                                                           | 2022-09-01 |217.0
 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/2.10.1+galaxy2                                                             | 2022-09-01 |213.0
 toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy3                                                                            | 2022-09-01 |207.0
 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_read_distribution/2.6.4.1                                                                           | 2022-09-01 |200.0
 toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.15.1+galaxy0                                                                         | 2022-09-01 |197.0
 ucsc_table_direct1                                                                                                                                  | 2022-09-01 |197.0
 toolshed.g2.bx.psu.edu/repos/devteam/samtool_filter2/samtool_filter2/1.8+galaxy1                                                                    | 2022-09-01 |194.0
 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.17.4                                                                                               | 2022-09-01 |194.0
 toolshed.g2.bx.psu.edu/repos/devteam/samtools_slice_bam/samtools_slice_bam/2.0.2                                                                    | 2022-09-01 |192.0
 toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.2.2+galaxy1                                                                    | 2022-09-01 |188.0
 toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0                                                                                          | 2022-09-01 |187.0
 toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2_quantifier/rbc_mirdeep2_quantifier/2.0.0                                                              | 2022-09-01 |186.0
 toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.7.5+galaxy1                                                                      | 2022-09-01 |172.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.30.0+galaxy1                                                                      | 2022-09-01 |166.0
 toolshed.g2.bx.psu.edu/repos/iuc/deg_annotate/deg_annotate/1.1.0                                                                                    | 2022-09-01 |163.0
 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.7.1+galaxy1                                                                              | 2022-09-01 |157.0
 toolshed.g2.bx.psu.edu/repos/devteam/samtools_rmdup/samtools_rmdup/2.0.1                                                                            | 2022-09-01 |156.0
 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.7.1+galaxy0                                                                              | 2022-09-01 |151.0
 toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/3.2                                                                                                  | 2022-09-01 |148.0
 toolshed.g2.bx.psu.edu/repos/devteam/kraken_filter/kraken-filter/1.3.1                                                                              | 2022-09-01 |146.0
 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1                                                                                 | 2022-09-01 |145.0
 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.4+galaxy1                                                                          | 2022-09-01 |144.0
 toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2_mapper/rbc_mirdeep2_mapper/2.0.0                                                                      | 2022-09-01 |132.0
 toolshed.g2.bx.psu.edu/repos/iuc/obi_uniq/obi_uniq/1.2.13                                                                                           | 2022-09-01 |129.0
 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/1.1.0.46-0                                                                                 | 2022-09-01 |129.0
 toolshed.g2.bx.psu.edu/repos/iuc/samtools_fastx/samtools_fastx/1.15.1+galaxy0                                                                       | 2022-09-01 |127.0
 toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.4                                                                              | 2022-09-01 |126.0
 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/3.5.1.0.0                                                      | 2022-09-01 |123.0
 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_inner_distance/2.6.4.1                                                                              | 2022-09-01 |120.0
 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.2.1+galaxy0                                                                                        | 2022-09-01 |120.0
 toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0                                                                                    | 2022-09-01 |118.0
 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/1.1.2                                                                       | 2022-09-01 |118.0
 CONVERTER_bam_to_coodinate_sorted_bam                                                                                                               | 2022-09-01 |114.0
 toolshed.g2.bx.psu.edu/repos/iuc/anndata_inspect/anndata_inspect/0.7.5+galaxy0                                                                      | 2022-09-01 |110.0
 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/2.10.1+galaxy2                                                                | 2022-09-01 |108.0
 toolshed.g2.bx.psu.edu/repos/iuc/volcanoplot/volcanoplot/0.0.5                                                                                      | 2022-09-01 |108.0
 csv_to_tabular                                                                                                                                      | 2022-09-01 |105.0
 toolshed.g2.bx.psu.edu/repos/iuc/filtlong/filtlong/0.2.1+galaxy0                                                                                    | 2022-09-01 |105.0
 toolshed.g2.bx.psu.edu/repos/iuc/bwa_mem2/bwa_mem2/2.2.1+galaxy0                                                                                    | 2022-09-01 |104.0
 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.1                                                                                  | 2022-09-01 |104.0
 toolshed.g2.bx.psu.edu/repos/bgruening/salmon/salmon/1.5.1+galaxy0                                                                                  | 2022-09-01 |103.0
 toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_dedup/umi_tools_dedup/1.1.2+galaxy2                                                                      | 2022-09-01 |102.0
 sort1                                                                                                                                               | 2022-09-01 |101.0
 toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.3                                                                      | 2022-09-01 |98.0
 toolshed.g2.bx.psu.edu/repos/iuc/metaphlan/metaphlan/3.0.14+galaxy0                                                                                 | 2022-09-01 |98.0
 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.3.5+galaxy0                                                                          | 2022-09-01 |96.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_plotcells/monocle3_plotCells/0.1.5+galaxy1                                                            | 2022-09-01 |95.0
 toolshed.g2.bx.psu.edu/repos/bgruening/replace_column_by_key_value_file/replace_column_with_key_value_file/0.2                                      | 2022-09-01 |95.0
 toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0                                                                                 | 2022-09-01 |94.0
 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/3.6+galaxy0                                              | 2022-09-01 |94.0
 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1                                                                    | 2022-09-01 |93.0
 toolshed.g2.bx.psu.edu/repos/iuc/macs2/macs2_callpeak/2.2.7.1+galaxy0                                                                               | 2022-09-01 |92.0
 toolshed.g2.bx.psu.edu/repos/peterjc/seq_filter_by_id/seq_filter_by_id/0.2.7                                                                        | 2022-09-01 |91.0
 toolshed.g2.bx.psu.edu/repos/bgruening/antismash/antismash/6.1.1+galaxy1                                                                            | 2022-09-01 |91.0
 toolshed.g2.bx.psu.edu/repos/devteam/kraken_report/kraken-report/1.3.1                                                                              | 2022-09-01 |91.0
 toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy3                                                                                | 2022-09-01 |90.0
 toolshed.g2.bx.psu.edu/repos/devteam/kraken2tax/Kraken2Tax/1.1                                                                                      | 2022-09-01 |89.0
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 toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.12.0+galaxy1                                                                                       | 2022-09-01 |87.0
 toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1                                                                        | 2022-09-01 |87.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3                                                                   | 2022-09-01 |85.0
 toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.9+galaxy0                                                                                        | 2022-09-01 |82.0
 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy2                                                                              | 2022-09-01 |79.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtobed/2.30.0+galaxy2                                                                          | 2022-09-01 |79.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_sortbed/2.30.0+galaxy1                                                                           | 2022-09-01 |79.0
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 toolshed.g2.bx.psu.edu/repos/devteam/bowtie_wrappers/bowtie_wrapper/1.2.0                                                                           | 2022-09-01 |76.0
 toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.1.0+galaxy1                                                                                      | 2022-09-01 |75.0
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 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_stats/bcftools_stats/1.10+galaxy1                                                                         | 2022-09-01 |73.0
 toolshed.g2.bx.psu.edu/repos/iuc/hypo/hypo/1.0.3+galaxy0                                                                                            | 2022-09-01 |73.0
 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.2b                                                                                          | 2022-09-01 |72.0
 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_bam_stat/2.6.4                                                                                      | 2022-09-01 |71.0
 toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/4.6.0+galaxy0                                                                                        | 2022-09-01 |70.0
 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.7+galaxy1                                                                                    | 2022-09-01 |69.0
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 __FLATTEN__                                                                                                                                         | 2022-09-01 |68.0
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 toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.2                                                                                    | 2022-09-01 |67.0
 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastp_wrapper/2.10.1+galaxy2                                                             | 2022-09-01 |66.0
 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.2                                                                          | 2022-09-01 |66.0
 toolshed.g2.bx.psu.edu/repos/iuc/datamash_transpose/datamash_transpose/1.1.0+galaxy2                                                                | 2022-09-01 |66.0
 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_inspect/scanpy_inspect/1.7.1+galaxy0                                                                        | 2022-09-01 |65.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.1.5                                                                              | 2022-09-01 |64.0
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 CONVERTER_fasta_to_tabular                                                                                                                          | 2022-09-01 |63.0
 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_filter/scanpy_filter/1.7.1+galaxy0                                                                          | 2022-09-01 |62.0
 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17+galaxy2                                                                                     | 2022-09-01 |62.0
 toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.6.1.1                                                                 | 2022-09-01 |62.0
 toolshed.g2.bx.psu.edu/repos/nml/spades/spades/3.15.4+galaxy1                                                                                       | 2022-09-01 |62.0
 toolshed.g2.bx.psu.edu/repos/iuc/porechop/porechop/0.2.4+galaxy0                                                                                    | 2022-09-01 |62.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.39.5.0                                                                   | 2022-09-01 |60.0
 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_mpileup/bcftools_mpileup/1.10+galaxy2                                                                     | 2022-09-01 |59.0
 toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.28.2+galaxy1                                                                                   | 2022-09-01 |59.0
 toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/2.2.1.3                                                                                    | 2022-09-01 |59.0
 __EXTRACT_DATASET__                                                                                                                                 | 2022-09-01 |59.0
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 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_SortSam/2.18.2.1                                                                                 | 2022-09-01 |58.0
 toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.7.5+galaxy1                                                                | 2022-09-01 |57.0
 toolshed.g2.bx.psu.edu/repos/lparsons/fastq_join/fastq_join/1.1.2-806                                                                               | 2022-09-01 |57.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy0                                                                                    | 2022-09-01 |57.0
 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.5+galaxy0                                                                              | 2022-09-01 |56.0
 CONVERTER_interval_to_bed_0                                                                                                                         | 2022-09-01 |56.0
 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0                                                                            | 2022-09-01 |56.0
 toolshed.g2.bx.psu.edu/repos/iuc/pear/iuc_pear/0.9.6.2                                                                                              | 2022-09-01 |56.0
 toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.9.1                                                                                 | 2022-09-01 |55.0
 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrelate/hicexplorer_hiccorrelate/3.6+galaxy0                                                | 2022-09-01 |55.0
 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bigwig_compare/deeptools_bigwig_compare/3.5.1.0.0                                                  | 2022-09-01 |55.0
 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CASM/2.18.2.1                                                                                    | 2022-09-01 |55.0
 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_tin/2.6.4.1                                                                                         | 2022-09-01 |54.0
 toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant/medaka_variant/1.3.2+galaxy1                                                                        | 2022-09-01 |54.0
 toolshed.g2.bx.psu.edu/repos/iuc/edger/edger/3.36.0+galaxy0                                                                                         | 2022-09-01 |54.0
 toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.4                                                                            | 2022-09-01 |53.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.6.0+galaxy0                                                              | 2022-09-01 |53.0
 toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.1+galaxy0                                                                        | 2022-09-01 |53.0
 toolshed.g2.bx.psu.edu/repos/bgruening/tgsgapcloser/tgsgapcloser/1.0.3+galaxy0                                                                      | 2022-09-01 |52.0
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 toolshed.g2.bx.psu.edu/repos/iuc/plasflow/PlasFlow/1.0                                                                                              | 2022-09-01 |52.0
 toolshed.g2.bx.psu.edu/repos/iuc/proteinortho/proteinortho/6.0.32+galaxy0                                                                           | 2022-09-01 |52.0
 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_pca/ggplot2_pca/3.3.5+galaxy0                                                                              | 2022-09-01 |51.0
 toolshed.g2.bx.psu.edu/repos/crs4/muscle/muscle/0.0.11                                                                                              | 2022-09-01 |51.0
 toolshed.g2.bx.psu.edu/repos/iuc/fastqe/fastqe/0.2.6+galaxy2                                                                                        | 2022-09-01 |51.0
 toolshed.g2.bx.psu.edu/repos/iuc/hmmer_hmmscan/hmmer_hmmscan/3.3.2+galaxy0                                                                          | 2022-09-01 |50.0
 toolshed.g2.bx.psu.edu/repos/iuc/roary/roary/3.13.0+galaxy2                                                                                         | 2022-09-01 |49.0
 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_read_GC/2.6.4                                                                                       | 2022-09-01 |49.0
 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.1+galaxy1                                                                          | 2022-09-01 |49.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastq_paired_end_splitter/fastq_paired_end_splitter/1.1.5+galaxy1                                              | 2022-09-01 |48.0
 toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/1.44.0+galaxy2                                                                                         | 2022-09-01 |48.0
 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectGcBiasMetrics/2.18.2.1                                                                    | 2022-09-01 |48.0
 toolshed.g2.bx.psu.edu/repos/devteam/picard/PicardInsertSize/1.56.0                                                                                 | 2022-09-01 |48.0
 toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy1                                                                                    | 2022-09-01 |48.0
 toolshed.g2.bx.psu.edu/repos/bgruening/canu/canu/2.1.1+galaxy0                                                                                      | 2022-09-01 |47.0
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 toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_fasta/cshl_fastq_to_fasta/1.0.2                                                                       | 2022-09-01 |47.0
 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0                                                                           | 2022-09-01 |46.0
 wig_to_bigWig                                                                                                                                       | 2022-09-01 |46.0
 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/3.3.2.0.0                                                      | 2022-09-01 |46.0
 toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.8.0+galaxy0                                                                               | 2022-09-01 |46.0
 toolshed.g2.bx.psu.edu/repos/devteam/sam_merge/sam_merge2/1.2.0                                                                                     | 2022-09-01 |45.0
 toolshed.g2.bx.psu.edu/repos/simon-gladman/velvetoptimiser/velvetoptimiser/2.2.6                                                                    | 2022-09-01 |45.0
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 comp1                                                                                                                                               | 2022-09-01 |44.0
 CONVERTER_interval_to_bedstrict_0                                                                                                                   | 2022-09-01 |44.0
 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.4.2+galaxy0                                                                                  | 2022-09-01 |44.0
 toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.3.1                                                                              | 2022-09-01 |44.0
 toolshed.g2.bx.psu.edu/repos/iuc/iqtree/iqtree/2.1.2+galaxy2                                                                                        | 2022-09-01 |43.0
 toolshed.g2.bx.psu.edu/repos/devteam/tophat2/tophat2/2.1.1                                                                                          | 2022-09-01 |42.0
 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hictransform/hicexplorer_hictransform/3.6+galaxy0                                                | 2022-09-01 |42.0
 toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/2.0.4                                                                      | 2022-09-01 |42.0
 toolshed.g2.bx.psu.edu/repos/rnateam/peakachu/peakachu/0.1.0.2                                                                                      | 2022-09-01 |41.0
 param_value_from_file                                                                                                                               | 2022-09-01 |41.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/msstats/msstats/4.0.0.0                                                                                        | 2022-09-01 |41.0
 toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.5.2+galaxy0                                                                            | 2022-09-01 |40.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_cells/scanpy_filter_cells/1.6.0+galaxy0                                                          | 2022-09-01 |40.0
 toolshed.g2.bx.psu.edu/repos/iuc/bracken/est_abundance/2.7+galaxy1                                                                                  | 2022-09-01 |40.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastx_clipper/cshl_fastx_clipper/1.0.1                                                                         | 2022-09-01 |40.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastx_reverse_complement/cshl_fastx_reverse_complement/1.0.0                                                   | 2022-09-01 |40.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcf2tsv/vcf2tsv/0.0.3                                                                                          | 2022-09-01 |40.0
 toolshed.g2.bx.psu.edu/repos/iuc/megahit/megahit/1.2.9+galaxy0                                                                                      | 2022-09-01 |40.0
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 toolshed.g2.bx.psu.edu/repos/iuc/ragtag/ragtag/2.1.0+galaxy0                                                                                        | 2022-09-01 |40.0
 CONVERTER_uncompressed_to_gz                                                                                                                        | 2022-09-01 |40.0
 toolshed.g2.bx.psu.edu/repos/ethevenot/heatmap/Heatmap/2.2.2                                                                                        | 2022-09-01 |40.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_tagbed/2.30.0                                                                                    | 2022-09-01 |39.0
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 toolshed.g2.bx.psu.edu/repos/iuc/pilon/pilon/1.20.1                                                                                                 | 2022-09-01 |39.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastx_clipper/cshl_fastx_clipper/1.0.3+galaxy0                                                                 | 2022-09-01 |39.0
 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy9                                                                                       | 2022-09-01 |39.0
 toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.1.2+galaxy1                                                                    | 2022-09-01 |38.0
 toolshed.g2.bx.psu.edu/repos/iuc/bwameth/bwameth/0.2.3+galaxy0                                                                                      | 2022-09-01 |38.0
 CONVERTER_bam_to_bigwig_0                                                                                                                           | 2022-09-01 |37.0
 toolshed.g2.bx.psu.edu/repos/iuc/obi_clean/obi_clean/1.2.13                                                                                         | 2022-09-01 |37.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_align_seqs/mothur_align_seqs/1.39.5.0                                                                       | 2022-09-01 |37.0
 toolshed.g2.bx.psu.edu/repos/iuc/fasttree/fasttree/2.1.10+galaxy1                                                                                   | 2022-09-01 |37.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2                                                                            | 2022-09-01 |36.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.30.0                                                                         | 2022-09-01 |36.0
 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/bamleftalign/1.3.1                                                                                   | 2022-09-01 |36.0
 toolshed.g2.bx.psu.edu/repos/rnateam/mafft/rbc_mafft_add/7.505+galaxy0                                                                              | 2022-09-01 |36.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastx_collapser/cshl_fastx_collapser/1.0.1                                                                     | 2022-09-01 |36.0
 toolshed.g2.bx.psu.edu/repos/iuc/humann_renorm_table/humann_renorm_table/3.0.0+galaxy1                                                              | 2022-09-01 |36.0
 toolshed.g2.bx.psu.edu/repos/iuc/pygenometracks/pygenomeTracks/3.6+galaxy1                                                                          | 2022-09-01 |35.0
 toolshed.g2.bx.psu.edu/repos/nml/metaspades/metaspades/3.15.4+galaxy2                                                                               | 2022-09-01 |35.0
 toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/2.0.15+galaxy0                                                                            | 2022-09-01 |35.0
 toolshed.g2.bx.psu.edu/repos/chemteam/mmpbsa_mmgbsa/mmpbsa_mmgbsa/21.10+galaxy0                                                                     | 2022-09-01 |35.0
 toolshed.g2.bx.psu.edu/repos/devteam/bamtools/bamtools/2.5.1+galaxy0                                                                                | 2022-09-01 |35.0
 tabular_to_csv                                                                                                                                      | 2022-09-01 |34.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_coveragebed/2.30.0                                                                               | 2022-09-01 |34.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer/fastq_trimmer/1.1.5                                                                              | 2022-09-01 |34.0
 toolshed.g2.bx.psu.edu/repos/devteam/samtools_rmdup/samtools_rmdup/1.0.0                                                                            | 2022-09-01 |34.0
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 toolshed.g2.bx.psu.edu/repos/galaxyp/metagene_annotator/metagene_annotator/1.0.0                                                                    | 2022-09-01 |33.0
 toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.2.1+galaxy0                                                                              | 2022-09-01 |33.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicmergematrixbins/hicexplorer_hicmergematrixbins/3.6+galaxy0                                    | 2022-09-01 |32.0
 toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.46.2+galaxy0                                                                       | 2022-09-01 |32.0
 toolshed.g2.bx.psu.edu/repos/iuc/pretext_map/pretext_map/0.1.9+galaxy0                                                                              | 2022-09-01 |32.0
 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_head_tool/1.1.0                                                                           | 2022-09-01 |32.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.30.0                                                                              | 2022-09-01 |32.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_pre_cluster/mothur_pre_cluster/1.39.5.0                                                                     | 2022-09-01 |31.0
 CONVERTER_interval_to_bgzip_0                                                                                                                       | 2022-09-01 |31.0
 CONVERTER_interval_to_bed12_0                                                                                                                       | 2022-09-01 |31.0
 toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.9+galaxy1                                                                            | 2022-09-01 |31.0
 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1                                                                           | 2022-09-01 |31.0
 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpSift_filter/3.4                                                                                          | 2022-09-01 |30.0
 toolshed.g2.bx.psu.edu/repos/iuc/ruvseq/ruvseq/1.26.0+galaxy0                                                                                       | 2022-09-01 |30.0
 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_filter/lofreq_filter/2.1.3.1+galaxy1                                                                        | 2022-09-01 |30.0
 toolshed.g2.bx.psu.edu/repos/bebatut/format_metaphlan2_output/format_metaphlan2_output/0.1.0                                                        | 2022-09-01 |30.0
 ChangeCase                                                                                                                                          | 2022-09-01 |30.0
 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplottads/hicexplorer_hicplottads/2.1.4.0                                                      | 2022-09-01 |30.0
 toolshed.g2.bx.psu.edu/repos/iuc/qiime_extract_barcodes/qiime_extract_barcodes/1.9.1.0                                                              | 2022-09-01 |30.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_reducedim/monocle3_reduceDim/0.1.4+galaxy0                                                            | 2022-09-01 |29.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindrestrictionsites/hicexplorer_hicfindrestrictionsites/3.6+galaxy0                          | 2022-09-01 |29.0
 toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2                                                                            | 2022-09-01 |28.0
 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MergeSamFiles/2.18.2.1                                                                           | 2022-09-01 |28.0
 toolshed.g2.bx.psu.edu/repos/iuc/bellerophon/bellerophon/1.0+galaxy0                                                                                | 2022-09-01 |28.0
 toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.17.5                                                                                               | 2022-09-01 |28.0
 CONVERTER_bed_to_fli_0                                                                                                                              | 2022-09-01 |28.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_slopbed/2.30.0+galaxy1                                                                           | 2022-09-01 |28.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/anndata_ops/anndata_ops/1.6.0+galaxy1                                                                          | 2022-09-01 |28.0
 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_pca/sklearn_pca/1.0.8.4+galaxy0                                                                      | 2022-09-01 |28.0
 toolshed.g2.bx.psu.edu/repos/iuc/links/links/2.0.1+galaxy+1                                                                                         | 2022-09-01 |28.0
 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.6+galaxy0                              | 2022-09-01 |28.0
 toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/1.0.0                                                                      | 2022-09-01 |28.0
 toolshed.g2.bx.psu.edu/repos/iuc/bctools_extract_alignment_ends/bctools_extract_alignment_ends/0.2.2                                                | 2022-09-01 |28.0
 CONVERTER_interval_to_tabix_0                                                                                                                       | 2022-09-01 |27.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regexColumn1/1.0.2                                                                          | 2022-09-01 |27.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastx_trimmer/cshl_fastx_trimmer/1.0.2+galaxy0                                                                 | 2022-09-01 |27.0
 toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.3+galaxy2                                                                    | 2022-09-01 |27.0
 toolshed.g2.bx.psu.edu/repos/iuc/vcf2maf/vcf2maf/1.6.21                                                                                             | 2022-09-01 |27.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.6.0+galaxy3                                                          | 2022-09-01 |26.0
 toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/uniprot/0.2                                                                           | 2022-09-01 |26.0
 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1                                                                            | 2022-09-01 |26.0
 toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy6                                                                                            | 2022-09-01 |26.0
 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/3.4+galaxy1                                                                                 | 2022-09-01 |26.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_preprocess/monocle3_preprocess/0.1.4+galaxy0                                                          | 2022-09-01 |26.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_heatmap_sim/mothur_heatmap_sim/1.39.5.0                                                                     | 2022-09-01 |26.0
 toolshed.g2.bx.psu.edu/repos/iuc/samtools_markdup/samtools_markdup/1.15.1+galaxy0                                                                   | 2022-09-01 |25.0
 interactive_tool_rstudio                                                                                                                            | 2022-09-01 |25.0
 toolshed.g2.bx.psu.edu/repos/imgteam/unzip/unzip/0.2                                                                                                | 2022-09-01 |25.0
 __TAG_FROM_FILE__                                                                                                                                   | 2022-09-01 |25.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.69                                                                                             | 2022-09-01 |24.0
 toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbmap/bbtools_bbmap/1.0.0+galaxy1.0.0                                                                      | 2022-09-01 |24.0
 toolshed.g2.bx.psu.edu/repos/iuc/mageck_count/mageck_count/0.5.8.4                                                                                  | 2022-09-01 |24.0
 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_varcall/0.1.8_1                                                                               | 2022-09-01 |24.0
 toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2/metaphlan2/2.6.0.0                                                                                      | 2022-09-01 |24.0
 toolshed.g2.bx.psu.edu/repos/iuc/gemini_query/gemini_query/0.20.1+galaxy2                                                                           | 2022-09-01 |24.0
 toolshed.g2.bx.psu.edu/repos/devteam/macs/peakcalling_macs/1.0.1                                                                                    | 2022-09-01 |24.0
 toolshed.g2.bx.psu.edu/repos/iuc/ivar_consensus/ivar_consensus/1.3.1+galaxy0                                                                        | 2022-09-01 |24.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_filter_seqs/mothur_filter_seqs/1.39.5.0                                                                     | 2022-09-01 |24.0
 toolshed.g2.bx.psu.edu/repos/iuc/pretext_snapshot/pretext_snapshot/0.0.3+galaxy1                                                                    | 2022-09-01 |24.0
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 toolshed.g2.bx.psu.edu/repos/devteam/samtools_calmd/samtools_calmd/2.0.3                                                                            | 2022-09-01 |23.0
 toolshed.g2.bx.psu.edu/repos/iuc/mummer_nucmer/mummer_nucmer/4.0.0rc1+galaxy2                                                                       | 2022-09-01 |23.0
 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_DownsampleSam/2.18.2.1                                                                           | 2022-09-01 |23.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/msstatstmt/msstatstmt/2.0.0+galaxy0                                                                            | 2022-09-01 |23.0
 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.3+galaxy0                                                                                | 2022-09-01 |23.0
 toolshed.g2.bx.psu.edu/repos/iuc/trinity/trinity/2.9.1+galaxy2                                                                                      | 2022-09-01 |23.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer_by_quality/fastq_quality_trimmer/1.1.5                                                           | 2022-09-01 |23.0
 toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0                                                                                        | 2022-09-01 |23.0
 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_acc_download/ncbi_acc_download/0.2.7+galaxy0                                                                  | 2022-09-01 |23.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_plot_embed/scanpy_plot_embed/1.8.1+galaxy0                                                              | 2022-09-01 |22.0
 toolshed.g2.bx.psu.edu/repos/iuc/meme_chip/meme_chip/4.11.2+galaxy1                                                                                 | 2022-09-01 |22.0
 toolshed.g2.bx.psu.edu/repos/devteam/varscan_version_2/varscan/2.4.2                                                                                | 2022-09-01 |22.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_getfastabed/2.30.0+galaxy1                                                                       | 2022-09-01 |22.0
 interactive_tool_jupyter_notebook                                                                                                                   | 2022-09-01 |22.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/thermo_raw_file_converter/thermo_raw_file_converter/1.3.4+galaxy0                                              | 2022-09-01 |22.0
 toolshed.g2.bx.psu.edu/repos/iuc/raven/raven/1.8.0+galaxy0                                                                                          | 2022-09-01 |22.0
 toolshed.g2.bx.psu.edu/repos/iuc/gemini_load/gemini_load/0.20.1+galaxy2                                                                             | 2022-09-01 |22.0
 toolshed.g2.bx.psu.edu/repos/bgruening/trna_prediction/aragorn_trna/0.6                                                                             | 2022-09-01 |22.0
 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_AddOrReplaceReadGroups/2.18.2.1                                                                  | 2022-09-01 |22.0
 toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.7.5+galaxy0                                                                | 2022-09-01 |22.0
 toolshed.g2.bx.psu.edu/repos/iuc/pathview/pathview/1.34.0+galaxy0                                                                                   | 2022-09-01 |21.0
 toolshed.g2.bx.psu.edu/repos/iuc/prinseq/prinseq/0.20.4+galaxy2                                                                                     | 2022-09-01 |21.0
 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_prepocessing_for_mlocarna/preMloc/0.4                                                               | 2022-09-01 |21.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/pepquery/pepquery/1.6.2+galaxy1                                                                                | 2022-09-01 |21.0
 toolshed.g2.bx.psu.edu/repos/iuc/mageck_test/mageck_test/0.5.8.1                                                                                    | 2022-09-01 |21.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastq_quality_filter/cshl_fastq_quality_filter/1.0.2+galaxy0                                                   | 2022-09-01 |21.0
 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/NSPDK_candidateClust/9.2.3.1                                                                  | 2022-09-01 |21.0
 toolshed.g2.bx.psu.edu/repos/iuc/tximport/tximport/1.22.0                                                                                           | 2022-09-01 |21.0
 toolshed.g2.bx.psu.edu/repos/iuc/newick_utils/newick_display/1.6+galaxy1                                                                            | 2022-09-01 |21.0
 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_postprocessing/glob_report/0.5                                                                      | 2022-09-01 |21.0
 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccorrectmatrix/hicexplorer_hiccorrectmatrix/3.6+galaxy0                                        | 2022-09-01 |21.0
 toolshed.g2.bx.psu.edu/repos/nilesh/rseqc/rseqc_bam2wig/2.6.4                                                                                       | 2022-09-01 |21.0
 toolshed.g2.bx.psu.edu/repos/iuc/jvarkit_wgscoverageplotter/jvarkit_wgscoverageplotter/20201223+galaxy0                                             | 2022-09-01 |21.0
 toolshed.g2.bx.psu.edu/repos/iuc/gatk4_mutect2/gatk4_mutect2/4.1.7.0+galaxy1                                                                        | 2022-09-01 |20.0
 toolshed.g2.bx.psu.edu/repos/iuc/ngsutils_bam_filter/ngsutils_bam_filter/0.5.9                                                                      | 2022-09-01 |20.0
 toolshed.g2.bx.psu.edu/repos/iuc/kraken_taxonomy_report/kraken_taxonomy_report/0.0.2                                                                | 2022-09-01 |20.0
 toolshed.g2.bx.psu.edu/repos/bgruening/fastq_info/fastq_info/0.25.1+Galaxy0                                                                         | 2022-09-01 |20.0
 toolshed.g2.bx.psu.edu/repos/devteam/samtools_mpileup/samtools_mpileup/2.1.6                                                                        | 2022-09-01 |20.0
 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindtads/hicexplorer_hicfindtads/3.6+galaxy0                                                  | 2022-09-01 |20.0
 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_datasets/datasets_download_genome/13.35.0+galaxy0                                                             | 2022-09-01 |20.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_partition/monocle3_partition/0.1.4+galaxy0                                                            | 2022-09-01 |20.0
 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_heatmap/deeptools_plot_heatmap/3.3.2.0.1                                                      | 2022-09-01 |20.0
 toolshed.g2.bx.psu.edu/repos/iuc/abricate/abricate_summary/1.0.1                                                                                    | 2022-09-01 |20.0
 toolshed.g2.bx.psu.edu/repos/iuc/extract_genomic_dna/Extract genomic DNA 1/3.0.3+galaxy2                                                            | 2022-09-01 |20.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastx_collapser/cshl_fastx_collapser/1.0.0                                                                     | 2022-09-01 |20.0
 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_cluster_reduce_dimension/scanpy_cluster_reduce_dimension/1.7.1+galaxy0                                      | 2022-09-01 |20.0
 toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.3.0                                                                                  | 2022-09-01 |20.0
 toolshed.g2.bx.psu.edu/repos/bgruening/cp_common/cp_common/3.1.9+galaxy1                                                                            | 2022-09-01 |19.0
 toolshed.g2.bx.psu.edu/repos/bgruening/cp_color_to_gray/cp_color_to_gray/3.1.9+galaxy0                                                              | 2022-09-01 |19.0
 toolshed.g2.bx.psu.edu/repos/bgruening/cp_cellprofiler/cp_cellprofiler/3.1.9+galaxy0                                                                | 2022-09-01 |19.0
 toolshed.g2.bx.psu.edu/repos/iuc/fastani/fastani/1.3                                                                                                | 2022-09-01 |19.0
 toolshed.g2.bx.psu.edu/repos/iuc/mlst/mlst/2.22.0                                                                                                   | 2022-09-01 |19.0
 toolshed.g2.bx.psu.edu/repos/devteam/gffread/gffread/2.2.1.3+galaxy0                                                                                | 2022-09-01 |19.0
 toolshed.g2.bx.psu.edu/repos/iuc/trinity_align_and_estimate_abundance/trinity_align_and_estimate_abundance/2.9.1+galaxy1                            | 2022-09-01 |19.0
 toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy2                                                                                | 2022-09-01 |19.0
 toolshed.g2.bx.psu.edu/repos/devteam/cuffmerge/cuffmerge/2.2.1.3                                                                                    | 2022-09-01 |19.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_bamtofastq/2.27.1                                                                                | 2022-09-01 |19.0
 toolshed.g2.bx.psu.edu/repos/bgruening/cp_save_images/cp_save_images/3.1.9+galaxy1                                                                  | 2022-09-01 |19.0
 toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie_merge/2.1.7+galaxy1                                                                            | 2022-09-01 |19.0
 toolshed.g2.bx.psu.edu/repos/iuc/graphlan/graphlan/1.0.0.0                                                                                          | 2022-09-01 |19.0
 toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.2.2+galaxy0                                                                              | 2022-09-01 |18.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_vsearch/mothur_chimera_vsearch/1.39.5.1                                                             | 2022-09-01 |18.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/1.6.17.0+galaxy4                                                                             | 2022-09-01 |18.0
 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/2.10.1+galaxy2                                                             | 2022-09-01 |18.0
 CONVERTER_gff_to_bed_0                                                                                                                              | 2022-09-01 |18.0
 toolshed.g2.bx.psu.edu/repos/bgruening/cp_export_to_spreadsheet/cp_export_to_spreadsheet/3.1.9+galaxy1                                              | 2022-09-01 |18.0
 __MERGE_COLLECTION__                                                                                                                                | 2022-09-01 |18.0
 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaverageregions/hicexplorer_hicaverageregions/3.6+galaxy0                                      | 2022-09-01 |18.0
 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_tsv2bam/stacks2_tsv2bam/2.55+galaxy4                                                                       | 2022-09-01 |18.0
 toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.7.5+galaxy1                                                                        | 2022-09-01 |18.0
 toolshed.g2.bx.psu.edu/repos/iuc/flash/flash/1.2.11.4                                                                                               | 2022-09-01 |17.0
 toolshed.g2.bx.psu.edu/repos/bgruening/interproscan/interproscan/5.55-88.0+galaxy3                                                                  | 2022-09-01 |17.0
 toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.2                                                | 2022-09-01 |17.0
 toolshed.g2.bx.psu.edu/repos/iuc/ivar_variants/ivar_variants/1.3.1+galaxy2                                                                          | 2022-09-01 |17.0
 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.3.2.0.0                                                  | 2022-09-01 |17.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicbuildmatrix/hicexplorer_hicbuildmatrix/3.6+galaxy0                                            | 2022-09-01 |16.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/filter_by_fasta_ids/filter_by_fasta_ids/2.1                                                                    | 2022-09-01 |16.0
 toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0                                                                                       | 2022-09-01 |16.0
 toolshed.g2.bx.psu.edu/repos/devteam/kraken/kraken/1.3.1                                                                                            | 2022-09-01 |16.0
 toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0.1                                                                                  | 2022-09-01 |16.0
 toolshed.g2.bx.psu.edu/repos/iuc/metaphlan2krona/metaphlan2krona/2.6.0.0                                                                            | 2022-09-01 |16.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcfselectsamples/vcfselectsamples/1.0.0_rc1+galaxy0                                                            | 2022-09-01 |16.0
 toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_sample/1.3.2                                                                                           | 2022-09-01 |16.0
 toolshed.g2.bx.psu.edu/repos/iuc/filtlong/filtlong/0.2.0                                                                                            | 2022-09-01 |16.0
 toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0                                                                               | 2022-09-01 |16.0
 toolshed.g2.bx.psu.edu/repos/crs4/taxonomy_krona_chart/taxonomy_krona_chart/2.7.1+galaxy0                                                           | 2022-09-01 |15.0
 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_tblastn_wrapper/2.10.1+galaxy2                                                            | 2022-09-01 |15.0
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 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.7                                                                                                | 2022-09-01 |15.0
 toolshed.g2.bx.psu.edu/repos/artbio/concatenate_multiple_datasets/cat_multi_datasets/1.4.1                                                          | 2022-09-01 |15.0
 toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbmap/bbtools_bbmap/1.0.0+galaxy4                                                                          | 2022-09-01 |15.0
 toolshed.g2.bx.psu.edu/repos/iuc/recentrifuge/recentrifuge/1.9.1+galaxy1                                                                            | 2022-09-01 |15.0
 toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy1                                                                                          | 2022-09-01 |15.0
 toolshed.g2.bx.psu.edu/repos/bgruening/bismark/bismark_bowtie2/0.22.1+galaxy4                                                                       | 2022-09-01 |15.0
 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_varextract/0.1.8_1                                                                            | 2022-09-01 |15.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina/docking/1.2.3+galaxy0                                                                          | 2022-09-01 |14.0
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 toolshed.g2.bx.psu.edu/repos/iuc/trycycler_cluster/trycycler_cluster/0.5.3                                                                          | 2022-09-01 |14.0
 CONVERTER_bz2_to_uncompressed                                                                                                                       | 2022-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_ordercells/monocle3_orderCells/0.1.4+galaxy0                                                          | 2022-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/crs4/sopra/sopra_wpc/0.1                                                                                               | 2022-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_searchcv/sklearn_searchcv/1.0.8.4                                                                    | 2022-09-01 |14.0
 CONVERTER_bam_to_qname_sorted_bam                                                                                                                   | 2022-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/iuc/samtools_depth/samtools_depth/1.15.1+galaxy0                                                                       | 2022-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcffixup/vcffixup/1.0.0_rc1+galaxy0                                                                            | 2022-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.63                                                                                             | 2022-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/iuc/mitos2/mitos2/2.0.6+galaxy2                                                                                        | 2022-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.1.0+galaxy7                                                                                        | 2022-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/iuc/trinity_analyze_diff_expr/trinity_analyze_diff_expr/2.8.4+galaxy1                                                  | 2022-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/rnateam/splitfasta/rbc_splitfasta/0.2.0                                                                                | 2022-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/devteam/xy_plot/XY_Plot_1/1.0.2                                                                                        | 2022-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/iuc/jellyfish/jellyfish/2.3.0+galaxy0                                                                                  | 2022-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/devteam/join/gops_join_1/1.0.0                                                                                         | 2022-09-01 |13.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_umap/scanpy_run_umap/1.6.0+galaxy1                                                                  | 2022-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_normalise_data/scanpy_normalise_data/1.6.0+galaxy0                                                      | 2022-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.6.0+galaxy2                                                                  | 2022-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.6.0+galaxy1                                                                    | 2022-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/devteam/samtools_flagstat/samtools_flagstat/2.0.3                                                                      | 2022-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_normalize/scanpy_normalize/1.7.1+galaxy0                                                                    | 2022-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_compute_graph/scanpy_compute_graph/1.6.0+galaxy4                                                        | 2022-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_remove_confounders/scanpy_remove_confounders/1.7.1+galaxy0                                                  | 2022-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/chemteam/parmconv/parmconv/21.10+galaxy0                                                                               | 2022-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_consensus/bcftools_consensus/1.9+galaxy1                                                                  | 2022-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_scale_data/scanpy_scale_data/1.6.0+galaxy0                                                              | 2022-09-01 |13.0
 CONVERTER_sam_to_bigwig_0                                                                                                                           | 2022-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_genes/scanpy_filter_genes/1.6.0+galaxy0                                                          | 2022-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/rnateam/chipseeker/chipseeker/1.28.3+galaxy0                                                                           | 2022-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.6.0+galaxy4                                                          | 2022-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a                                                                                          | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/1.6.3                                                                                  | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicpca/hicexplorer_hicpca/3.6+galaxy0                                                            | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.1.0+galaxy3                                                                                        | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster_split/mothur_cluster_split/1.39.5.0                                                                 | 2022-09-01 |12.0
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 toolshed.g2.bx.psu.edu/repos/devteam/samtools_rmdup/samtools_rmdup/2.0                                                                              | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3                                                                                      | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/iuc/bioext_bam2msa/bioext_bam2msa/0.20.4+galaxy0                                                                       | 2022-09-01 |12.0
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 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.1                                                                          | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_vcf_filter/0.1.8_1                                                                            | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.6.0b-2                                                                                        | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff/4.1.0                                                                                                | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/iuc/samtools_merge/samtools_merge/1.15.1+galaxy0                                                                       | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/devteam/cuffcompare/cuffcompare/2.2.1.2                                                                                | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_shared/mothur_make_shared/1.39.5.0                                                                     | 2022-09-01 |12.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicadjustmatrix/hicexplorer_hicadjustmatrix/3.6+galaxy0                                          | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_FixMateInformation/2.18.2.1                                                                      | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/csbl/repeatmodeler/repeatmodeler/2.0.3+galaxy0                                                                         | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/2.10.1+galaxy0                                                             | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/iuc/dada2_filterandtrim/dada2_filterAndTrim/1.20+galaxy0                                                               | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.2                                                                      | 2022-09-01 |12.0
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 toolshed.g2.bx.psu.edu/repos/iuc/seqkit_stats/seqkit_stats/2.2.0+galaxy0                                                                            | 2022-09-01 |12.0
 gbk_to_orf                                                                                                                                          | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_rmsd/bio3d_rmsd/2.3.4                                                                                   | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/bgruening/sailfish/sailfish/0.10.1.1                                                                                   | 2022-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/iuc/humann2/humann2/0.11.1.0                                                                                           | 2022-09-01 |11.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage/deeptools_bam_coverage/2.4.1.0                                                        | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.6                                                                                                | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/iuc/export2graphlan/export2graphlan/0.19                                                                               | 2022-09-01 |11.0
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 velveth                                                                                                                                             | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_rnaseq/qualimap_rnaseq/2.2.2c+galaxy1                                                                     | 2022-09-01 |11.0
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 toolshed.g2.bx.psu.edu/repos/iuc/vsearch/vsearch_dereplication/1.9.7.0                                                                              | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/iuc/snp_dists/snp_dists/0.6.3+galaxy0                                                                                  | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/iuc/humann2_genefamilies_genus_level/humann2_genefamilies_genus_level/0.11.1.0                                         | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_create/monocle3_create/0.1.4+galaxy2                                                                  | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_norm/bcftools_norm/1.9+galaxy1                                                                            | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.14.6+galaxy0                                                                                      | 2022-09-01 |11.0
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 toolshed.g2.bx.psu.edu/repos/mvdbeek/add_input_name_as_column/addName/0.2.0                                                                         | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: extractseq35/5.0.0                                                                            | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/rnateam/sortmerna/bg_sortmerna/2.1b.5                                                                                  | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcffilter/vcffilter2/1.0.0_rc3+galaxy3                                                                         | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/devteam/cuffdiff/cuffdiff/2.2.1.6                                                                                      | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/iuc/gtftobed12/gtftobed12/357                                                                                          | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_seqs/mothur_remove_seqs/1.39.5.0                                                                     | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_setup/gmx_setup/2022+galaxy0                                                                              | 2022-09-01 |11.0
 CONVERTER_bedgraph_to_bigwig                                                                                                                        | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.71                                                                                             | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.2                                                                                | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy2                                                                                | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/galaxy-australia/smudgeplot/smudgeplot/0.2.5+galaxy+1                                                                  | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regex1/1.0.2                                                                                | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_varreport/0.1.8_1                                                                             | 2022-09-01 |11.0
 toolshed.g2.bx.psu.edu/repos/bgruening/cp_measure_object_size_shape/cp_measure_object_size_shape/3.1.9+galaxy0                                      | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/bgruening/cp_identify_primary_objects/cp_identify_primary_objects/3.1.9+galaxy1                                        | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/ethevenot/qualitymetrics/quality_metrics/2.2.8                                                                         | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/bgruening/rxdock_rbdock/rxdock_rbdock/0.1.5                                                                            | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicatesWithMateCigar/2.18.2.2                                                             | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/bgruening/cp_overlay_outlines/cp_overlay_outlines/3.1.9+galaxy0                                                        | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/iuc/strelka_germline/strelka_germline/2.9.10+galaxy0                                                                   | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/bgruening/cp_measure_object_intensity/cp_measure_object_intensity/3.1.9+galaxy0                                        | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcfbedintersect/vcfbedintersect/1.0.0_rc1+galaxy0                                                              | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/bgruening/cp_track_objects/cp_track_objects/3.1.9+galaxy0                                                              | 2022-09-01 |10.0
 __EXPORT_HISTORY__                                                                                                                                  | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/iuc/annotatemyids/annotatemyids/3.12.0+galaxy1                                                                         | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.4.5+galaxy0                                                                                  | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/2.2.1+galaxy1                                                                    | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs/mothur_classify_seqs/1.39.5.0                                                                 | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_learngraph/monocle3_learnGraph/0.1.4+galaxy0                                                          | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/peterjc/mira_assembler/mira_assembler/0.0.11                                                                           | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/iuc/samtools_coverage/samtools_coverage/1.15.1+galaxy0                                                                 | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: union105/5.0.0                                                                                | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/iuc/abyss/abyss-pe/2.3.4+galaxy1                                                                                       | 2022-09-01 |10.0
 velvetg                                                                                                                                             | 2022-09-01 |10.0
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 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/4.3+T.galaxy4                                                                               | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/bgruening/cp_tile/cp_tile/3.1.9+galaxy0                                                                                | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/iuc/gffcompare/gffcompare/0.11.2                                                                                       | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/rnateam/structure_to_gspan/structure_to_gspan/0.4                                                                      | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_preprocessing/preproc/0.5                                                                           | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/2.2.1+galaxy2                                                                          | 2022-09-01 |10.0
 toolshed.g2.bx.psu.edu/repos/devteam/emboss_5/EMBOSS: needle56/5.0.0.1                                                                              | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.9+galaxy0                                                                                     | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_multi_bigwig_summary/deeptools_multi_bigwig_summary/3.5.1.0.0                                      | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_reverse_seqs/mothur_reverse_seqs/1.39.5.0                                                                   | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdetectloops/hicexplorer_hicdetectloops/3.6+galaxy0                                            | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.7.1+galaxy2                                                                               | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_dedup/umi_tools_dedup/0.5.3.0                                                                            | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed_histogram/2.19.0                                                               | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.3.0                                                                                          | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_procrad/stacks2_procrad/2.55+galaxy4                                                                       | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicconvertformat/hicexplorer_hicconvertformat/3.6+galaxy0                                        | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/kraken_biom/kraken_biom/1.0.1+galaxy0                                                                              | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_alnqual/lofreq_alnqual/2.1.5+galaxy1                                                                        | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.14.5+galaxy0                                                                                      | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.5+galaxy1                                                                                         | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/ivar_consensus/ivar_consensus/1.2.2+galaxy0                                                                        | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_enrichment/deeptools_plot_enrichment/3.5.1.0.0                                                | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/ivar_variants/ivar_variants/1.2+galaxy0                                                                            | 2022-09-01 |9.0
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 toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_extract/umi_tools_extract/0.5.5.1                                                                        | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_polya/nanopolish_polya/0.13.2+galaxy0                                                             | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/qualimap_counts/qualimap_counts/2.2.2c                                                                             | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/progressivemauve/progressivemauve/2015_02_13.1                                                                     | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastx_reverse_complement/cshl_fastx_reverse_complement/1.0.2+galaxy0                                           | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_cells/scanpy_filter_cells/1.8.1+galaxy0                                                          | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_raxml/1.0.0                                                                             | 2022-09-01 |9.0
 __FILTER_FROM_FILE__                                                                                                                                | 2022-09-01 |9.0
 wc_gnu                                                                                                                                              | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/trinotate/trinotate/3.2.2+galaxy0                                                                                  | 2022-09-01 |9.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/anndata_ops/anndata_ops/1.8.1+galaxy0                                                                          | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_efetch/ncbi_eutils_efetch/1.2                                                                          | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/mummer_dnadiff/mummer_dnadiff/4.0.0rc1+galaxy2                                                                     | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/spades_plasmidspades/spades_plasmidspades/3.15.4+galaxy2                                                           | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/tbl2gff3/tbl2gff3/1.1                                                                                              | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed_bedgraph/2.19.0                                                                | 2022-09-01 |9.0
 toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/1.2a+galaxy1                                                                                             | 2022-09-01 |9.0
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 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.8+galaxy1                                                                                        | 2022-09-01 |8.0
 toolshed.g2.bx.psu.edu/repos/iuc/pe_histogram/pe_histogram/1.0.1                                                                                    | 2022-09-01 |8.0
 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpSift_annotate/3.4                                                                                        | 2022-09-01 |8.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcf2tsv/vcf2tsv/1.0.0_rc3+galaxy0                                                                              | 2022-09-01 |8.0
 toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy_core/3.2                                                                                             | 2022-09-01 |8.0
 toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.2.0                                                                               | 2022-09-01 |8.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/eggnog_mapper/eggnog_mapper/2.1.8+galaxy3                                                                      | 2022-09-01 |8.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_read_10x/scanpy_read_10x/1.8.1+galaxy0                                                                  | 2022-09-01 |8.0
 CONVERTER_ref_to_seq_taxomony                                                                                                                       | 2022-09-01 |8.0
 toolshed.g2.bx.psu.edu/repos/iuc/gemini_stats/gemini_stats/0.20.1                                                                                   | 2022-09-01 |8.0
 toolshed.g2.bx.psu.edu/repos/nml/sistr_cmd/sistr_cmd/1.1.1+galaxy1                                                                                  | 2022-09-01 |8.0
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 toolshed.g2.bx.psu.edu/repos/iuc/homer_findmotifsgenome/homer_findMotifsGenome/4.11+galaxy2                                                         | 2022-09-01 |8.0
 toolshed.g2.bx.psu.edu/repos/iuc/samtools_fixmate/samtools_fixmate/1.15.1+galaxy0                                                                   | 2022-09-01 |8.0
 gff2bed1                                                                                                                                            | 2022-09-01 |8.0
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 bed2gff1                                                                                                                                            | 2022-09-01 |8.0
 toolshed.g2.bx.psu.edu/repos/iuc/breseq/breseq/0.35.5+galaxy1                                                                                       | 2022-09-01 |8.0
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 toolshed.g2.bx.psu.edu/repos/peterjc/blastxml_to_top_descr/blastxml_to_top_descr/0.1.1                                                              | 2022-09-01 |8.0
 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_artifact_metrics/2.18.2.2                                                                        | 2022-09-01 |8.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_tree_shared/mothur_tree_shared/1.39.5.0                                                                     | 2022-09-01 |8.0
 toolshed.g2.bx.psu.edu/repos/iuc/novoplasty/novoplasty/4.3.1+galaxy0                                                                                | 2022-09-01 |8.0
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 toolshed.g2.bx.psu.edu/repos/iuc/raxml/raxml/8.2.4+galaxy3                                                                                          | 2022-09-01 |7.0
 toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/4.1.1+galaxy0                                                                       | 2022-09-01 |7.0
 toolshed.g2.bx.psu.edu/repos/iuc/export2graphlan/export2graphlan/0.20+galaxy0                                                                       | 2022-09-01 |7.0
 toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0                                                                                | 2022-09-01 |7.0
 toolshed.g2.bx.psu.edu/repos/iuc/bbtools_bbduk/bbtools_bbduk/1.0.0+galaxy3                                                                          | 2022-09-01 |7.0
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 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.6+galaxy2                                                                                    | 2022-09-01 |7.0
 toolshed.g2.bx.psu.edu/repos/devteam/fasta_filter_by_length/fasta_filter_by_length/1.2                                                              | 2022-09-01 |7.0
 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_sim/gmx_sim/2022+galaxy0                                                                                  | 2022-09-01 |7.0
 sra_source                                                                                                                                          | 2022-09-01 |7.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/augustus/augustus/3.4.0+galaxy1                                                                              | 2022-09-01 |7.0
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 toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2                                                                                        | 2022-09-01 |7.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.8.1+galaxy0                                                          | 2022-09-01 |7.0
 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/2.2.1                                                                            | 2022-09-01 |7.0
 toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy0                                                                                 | 2022-09-01 |7.0
 toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond_makedb/2.0.15+galaxy0                                                                     | 2022-09-01 |7.0
 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_call/bcftools_call/1.9+galaxy1                                                                            | 2022-09-01 |7.0
 toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/0.8.1+galaxy2                                                                                 | 2022-09-01 |7.0
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 toolshed.g2.bx.psu.edu/repos/iuc/snp_sites/snp_sites/2.5.1+galaxy0                                                                                  | 2022-09-01 |7.0
 CONVERTER_biom                                                                                                                                      | 2022-09-01 |7.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_multicovtbed/2.30.0                                                                              | 2022-09-01 |7.0
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 toolshed.g2.bx.psu.edu/repos/iuc/shasta/shasta/0.6.0+galaxy0                                                                                        | 2022-09-01 |7.0
 toolshed.g2.bx.psu.edu/repos/iuc/ensembl_vep/ensembl_vep/106.1+galaxy1                                                                              | 2022-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/iuc/gecko/gecko/1.2                                                                                                    | 2022-09-01 |6.0
 __FILTER_EMPTY_DATASETS__                                                                                                                           | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_dist_shared/mothur_dist_shared/1.39.5.0                                                                     | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/1.3.6+galaxy0                                                                              | 2022-09-01 |6.0
 __RELABEL_FROM_FILE__                                                                                                                               | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/iuc/metaphlan/metaphlan/3.0.9+galaxy0                                                                                  | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/3.4+galaxy0                                                                                 | 2022-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/iuc/anndata_export/anndata_export/0.7.5+galaxy1                                                                        | 2022-09-01 |6.0
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 CONVERTER_bed_to_gff_0                                                                                                                              | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/rnateam/mafft/rbc_mafft/7.489+galaxy0                                                                                  | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_tableviewer/0.69.8+galaxy9                                                                           | 2022-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/unique/bg_uniq/0.3                                                                                           | 2022-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/iuc/fgsea/fgsea/1.8.0+galaxy1                                                                                          | 2022-09-01 |6.0
 CONVERTER_fasta_to_len                                                                                                                              | 2022-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/iuc/medaka_variant_pipeline/medaka_variant_pipeline/1.4.4+galaxy1                                                      | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcfallelicprimitives/vcfallelicprimitives/1.0.0_rc3+galaxy0                                                    | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/iuc/snpfreqplot/snpfreqplot/1.0+galaxy3                                                                                | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/iuc/lofreq_indelqual/lofreq_indelqual/2.1.5+galaxy1                                                                    | 2022-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/iuc/spades_metaviralspades/spades_metaviralspades/3.15.4+galaxy2                                                       | 2022-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_CollectRnaSeqMetrics/2.18.2.2                                                                    | 2022-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.5.1                                                                                          | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/iuc/arriba/arriba/2.3.0+galaxy0                                                                                        | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcf2tsv/vcf2tsv/1.0.0_rc1+galaxy0                                                                              | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/devteam/get_flanks/get_flanks1/1.0.0                                                                                   | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcfvcfintersect/vcfvcfintersect/1.0.0_rc1+galaxy0                                                              | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/iuc/humann_unpack_pathways/humann_unpack_pathways/3.0.0+galaxy1                                                        | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/nml/collapse_collections/collapse_dataset/4.2                                                                          | 2022-09-01 |6.0
 CONVERTER_wig_to_bigwig                                                                                                                             | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/iuc/aldex2/aldex2/1.26.0+galaxy0                                                                                       | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/iuc/mitos/mitos/1.0.5+galaxy1                                                                                          | 2022-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/4.1.2+galaxy0                                                                                    | 2022-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.8+galaxy0                                                                                        | 2022-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/iuc/coverm_genome/coverm_genome/0.2.1+galaxy0                                                                          | 2022-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_energy/gmx_energy/2022+galaxy1                                                                            | 2022-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/retrieve_scxa/retrieve_scxa/v0.0.2+galaxy2                                                                     | 2022-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/iuc/mlst/mlst/2.19.0                                                                                                   | 2022-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.2                                                                  | 2022-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/iuc/column_remove_by_header/column_remove_by_header/1.0                                                                | 2022-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/iuc/mothur_dist_seqs/mothur_dist_seqs/1.39.5.0                                                                         | 2022-09-01 |5.0
 omicsdi                                                                                                                                             | 2022-09-01 |5.0
 __ZIP_COLLECTION__                                                                                                                                  | 2022-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/get_species_taxids/2.10.1+galaxy2                                                              | 2022-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_mergebed/2.30.0                                                                                  | 2022-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/iuc/gemini_annotate/gemini_annotate/0.20.1+galaxy2                                                                     | 2022-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/peterjc/blast_rbh/blast_reciprocal_best_hits/0.1.11                                                                    | 2022-09-01 |5.0
 CONVERTER_len_to_linecount                                                                                                                          | 2022-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/iuc/dada2_assigntaxonomyaddspecies/dada2_assignTaxonomyAddspecies/1.20+galaxy0                                         | 2022-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/iuc/minia/minia/3.2.6                                                                                                  | 2022-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca/2.3.4                                                                                     | 2022-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_uniq_tool/1.1.1                                                                           | 2022-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mergefa/1.3.1                                                                                          | 2022-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/earlhaminst/ete/species_tree_generator/3.0.0b35                                                                        | 2022-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_gstacks/stacks2_gstacks/2.55+galaxy4                                                                       | 2022-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_databases/4.3+T.galaxy2                                                                              | 2022-09-01 |5.0
 interactive_tool_ml_jupyter_notebook                                                                                                                | 2022-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/jjohnson/rsem/rsem_prepare_reference/1.1.17                                                                            | 2022-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/peterjc/blast2go/blast2go/0.0.9                                                                                        | 2022-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/iuc/meme_meme/meme_meme/5.4.1+galaxy0                                                                                  | 2022-09-01 |4.0
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 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_ustacks/stacks2_ustacks/2.55+galaxy4                                                                       | 2022-09-01 |4.0
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 CONVERTER_fasta_to_fai                                                                                                                              | 2022-09-01 |4.0
 __IMPORT_HISTORY__                                                                                                                                  | 2022-09-01 |4.0
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 toolshed.g2.bx.psu.edu/repos/iuc/funannotate_predict/funannotate_predict/1.8.9+galaxy2                                                              | 2022-09-01 |4.0
 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17                                                                                             | 2022-09-01 |4.0
 toolshed.g2.bx.psu.edu/repos/iuc/mash/mash_screen/2.3+galaxy3                                                                                       | 2022-09-01 |4.0
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 toolshed.g2.bx.psu.edu/repos/iuc/maker/maker/2.31.11+galaxy2                                                                                        | 2022-09-01 |4.0
 CONVERTER_interval_to_bed6_0                                                                                                                        | 2022-09-01 |4.0
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 toolshed.g2.bx.psu.edu/repos/jjohnson/rsem/rsem_calculate_expression/1.1.17                                                                         | 2022-09-01 |4.0
 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap/ggplot2_heatmap/3.3.5+galaxy0                                                                      | 2022-09-01 |4.0
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 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_em/gmx_em/2022+galaxy0                                                                                    | 2022-09-01 |4.0
 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/tmhmm2/0.0.17                                                                                | 2022-09-01 |4.0
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 interactive_tool_pangeo_notebook                                                                                                                    | 2022-09-01 |4.0
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 CONVERTER_Bam_Bai_0                                                                                                                                 | 2022-09-01 |4.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotdistvscounts/hicexplorer_hicplotdistvscounts/3.6+galaxy0                                  | 2022-09-01 |4.0
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 toolshed.g2.bx.psu.edu/repos/iuc/bioext_bealign/bioext_bealign/0.20.4+galaxy0                                                                       | 2022-09-01 |4.0
 toolshed.g2.bx.psu.edu/repos/devteam/freebayes/bamleftalign/1.1.0.46-0                                                                              | 2022-09-01 |4.0
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 toolshed.g2.bx.psu.edu/repos/iuc/funannotate_sort/funannotate_sort/1.8.9+galaxy2                                                                    | 2022-09-01 |4.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/retrieve_scxa/retrieve_scxa/v0.0.1+galaxy1                                                                     | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_solvate/gmx_solvate/2022+galaxy0                                                                          | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_sim/gmx_sim/2020.4+galaxy1                                                                                | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_variable_genes/scanpy_find_variable_genes/1.3.2+galaxy0                                            | 2022-09-01 |3.0
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 hgv_linkToGProfile                                                                                                                                  | 2022-09-01 |3.0
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 toolshed.g2.bx.psu.edu/repos/iuc/barrnap/barrnap/1.2.2                                                                                              | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/ucsc_cell_browser/ucsc_cell_browser/0.5.21+galaxy0                                                             | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/4.1.1+galaxy0                                                                                        | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/cooc_tabmut/cooc_tabmut/0.2+galaxy0                                                                                | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_normalise_data/scanpy_normalise_data/1.3.2+galaxy1                                                      | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/deepvariant/deepvariant/1.4.0+galaxy0                                                                              | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.12                                                                                             | 2022-09-01 |3.0
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 toolshed.g2.bx.psu.edu/repos/iuc/metabat2/metabat2/2.15+galaxy2                                                                                     | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_receptor/prepare_receptor/1.5.7+galaxy0                                                | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_editconf/gmx_editconf/2022+galaxy0                                                                        | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/limma_voom/limma_voom/3.48.0+galaxy1                                                                               | 2022-09-01 |3.0
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 toolshed.g2.bx.psu.edu/repos/nml/mob_suite/mob_recon/3.0.3+galaxy0                                                                                  | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.3.2+galaxy1                                                                    | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.4.4+galaxy0                                                                    | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/bgruening/chembl/chembl/0.10.1+galaxy4                                                                                 | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1                                                                                        | 2022-09-01 |3.0
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 toolshed.g2.bx.psu.edu/repos/devteam/vcfhethom/vcfhethom/1.0.0_rc1+galaxy0                                                                          | 2022-09-01 |3.0
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 toolshed.g2.bx.psu.edu/repos/peterjc/mummer/mummerplot_wrapper/0.0.7                                                                                | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_aln_to_links/0.69.8+galaxy9                                                                          | 2022-09-01 |3.0
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 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_tsv2bam/stacks2_tsv2bam/2.55+galaxy2                                                                       | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_violin/ggplot2_violin/3.3.5+galaxy0                                                                        | 2022-09-01 |3.0
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 toolshed.g2.bx.psu.edu/repos/iuc/checkm_plot/checkm_plot/1.2.0+galaxy0                                                                              | 2022-09-01 |3.0
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 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_download/4.3+T.galaxy1                                                                               | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.6+galaxy1                                                                                    | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/homer_annotatepeaks/homer_annotatePeaks/4.11+galaxy2                                                               | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_mergebedgraph/2.19.0                                                                             | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_tile/0.69.8+galaxy9                                                                      | 2022-09-01 |3.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.3.2+galaxy1                                                          | 2022-09-01 |3.0
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 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_cluster_kegg/1.0.0                                                                      | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/bgruening/fpocket/fpocket/4.0.0+galaxy0                                                                                | 2022-09-01 |3.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hiccomparematrices/hicexplorer_hiccomparematrices/3.6+galaxy0                                    | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_download/4.3+T.galaxy2                                                                               | 2022-09-01 |3.0
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 toolshed.g2.bx.psu.edu/repos/iuc/pathview/pathview/1.24.0+galaxy2                                                                                   | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/devteam/samtools_phase/samtools_phase/2.0.2                                                                            | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/gubbins/gubbins/3.2.1+galaxy0                                                                                      | 2022-09-01 |3.0
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 liftOver1                                                                                                                                           | 2022-09-01 |3.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_genes/scanpy_filter_genes/1.3.2+galaxy1                                                          | 2022-09-01 |3.0
 gff_to_sequence                                                                                                                                     | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/salsa/salsa/2.3+galaxy3                                                                                            | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_genes/scanpy_filter_genes/1.8.1+galaxy0                                                          | 2022-09-01 |3.0
 toolshed.g2.bx.psu.edu/repos/iuc/raxml/raxml/8.2.4+galaxy2                                                                                          | 2022-09-01 |3.0
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 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/signalp3/0.0.20                                                                              | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_editconf/gmx_editconf/2020.4+galaxy0                                                                      | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/iuc/funannotate_annotate/funannotate_annotate/1.8.9+galaxy2                                                            | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_cstacks/stacks2_cstacks/2.55+galaxy2                                                                       | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/rnateam/rcas/rcas/1.5.4                                                                                                | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/bgruening/minced/minced/0.1.5                                                                                          | 2022-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/iuc/snpsift/snpSift_rmInfo/4.3+t.galaxy0                                                                               | 2022-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/gd_new_oscar/1.0.0                                                                         | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_ustacks/stacks2_ustacks/2.55+galaxy3                                                                       | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcfgenotypes/vcfgenotypes/1.0.0_rc1+galaxy0                                                                    | 2022-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/blankenberg/naive_variant_caller/naive_variant_caller/0.0.3                                                            | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_cstacks/stacks2_cstacks/2.55+galaxy4                                                                       | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/iuc/pangolin/pangolin/3.1.14+galaxy0                                                                                   | 2022-09-01 |2.0
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 Extract_features1                                                                                                                                   | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy10                                                                                      | 2022-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/diffbind/diffbind/2.10.0                                                                                     | 2022-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/iuc/hyphy_annotate/hyphy_annotate/2.5.36+galaxy0                                                                       | 2022-09-01 |2.0
 __EXPORT_HISTORY_TO_URI__                                                                                                                           | 2022-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/iuc/binning_refiner/bin_refiner/1.4.3+galaxy1                                                                          | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/iuc/vcfanno/vcfanno/0.3.3+galaxy0                                                                                      | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/nml/spades/spades/1.2                                                                                                  | 2022-09-01 |2.0
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 interactive_tool_simtext_app                                                                                                                        | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.6                                                                                                | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastdbcmd_wrapper/2.10.1+galaxy2                                                         | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/peterjc/venn_list/venn_list/0.1.1                                                                                      | 2022-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/nick/allele_counts/allele_counts_1/1.2                                                                                 | 2022-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/devteam/weblogo3/rgweblogo3/3.5.0                                                                                      | 2022-09-01 |2.0
 __IMPORT_HISTORY__                                                                                                                                  | 2020-09-01 |15.0
 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_box/prepare_box/2020.03.4+galaxy0                                                      | 2020-09-01 |15.0
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 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_violin/ggplot2_violin/2.2.1+galaxy0                                                                        | 2020-09-01 |15.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_targetedfileconverter/TargetedFileConverter/2.5+galaxy0                                                 | 2020-09-01 |15.0
 toolshed.g2.bx.psu.edu/repos/peterjc/tmhmm_and_signalp/rxlr_motifs/0.0.14                                                                           | 2020-09-01 |15.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.6.0+galaxy0                                                                    | 2020-09-01 |15.0
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 toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.3.1                                                                                           | 2020-09-01 |15.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.4.3+galaxy0                                                                    | 2020-09-01 |15.0
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 toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspectclusters/raceid_inspectclusters/3.1                                                                  | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.6.0+galaxy0                                                          | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_plot_chromatogram/xcms_plot_chromatogram/3.4.4.0                                                      | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/iuc/ruvseq/ruvseq/1.16.0                                                                                               | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/rnateam/paralyzer/paralyzer/1.5                                                                                        | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/earlhaminst/hcluster_sg_parser/hcluster_sg_parser/0.2.1                                                                | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_fisher/2.29.2                                                                                    | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathassaygenerator/OpenSwathAssayGenerator/2.5+galaxy0                                             | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_pca/ggplot2_pca/2.2.1                                                                                      | 2020-09-01 |14.0
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 toolshed.g2.bx.psu.edu/repos/chemteam/bio3d_pca/bio3d_pca/2.3.4                                                                                     | 2020-09-01 |14.0
 CONVERTER_bed_to_gff_0                                                                                                                              | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotviewpoint/hicexplorer_hicplotviewpoint/3.4.3.0                                            | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/wolma/mimodd_main/mimodd_map/0.1.8_1                                                                                   | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/iuc/gemini_query/gemini_query/0.20.1+galaxy1                                                                           | 2020-09-01 |14.0
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 toolshed.g2.bx.psu.edu/repos/iuc/pureclip/pureclip/1.0.4                                                                                            | 2020-09-01 |14.0
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 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.3.3                                                                         | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/iuc/qiime_multiple_join_paired_ends/qiime_multiple_join_paired_ends/1.9.1.0                                            | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_cells/scanpy_filter_cells/1.4.3+galaxy0                                                          | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/2.0.1                                                                                          | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_merge/bcftools_merge/1.10                                                                                 | 2020-09-01 |14.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/gffcompare_to_bed/gffcompare_to_bed/0.2.1                                                                      | 2020-09-01 |13.0
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 bed2gff1                                                                                                                                            | 2020-09-01 |13.0
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 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/2.6.0.0                                                                  | 2020-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/bgruening/chembl/chembl/0.10.1+galaxy2                                                                                 | 2020-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/devteam/cummerbund/cummeRbund/2.16.0+galaxy1                                                                           | 2020-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/thermo_raw_file_converter/thermo_raw_file_converter/1.2.3+galaxy0                                              | 2020-09-01 |13.0
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 __DATA_FETCH__                                                                                                                                      | 2020-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/1.12.1.3                                                                 | 2020-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory/raceid_inspecttrajectory/3.1                                                              | 2020-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/iuc/qiime_align_seqs/qiime_align_seqs/1.9.1.0                                                                          | 2020-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/iuc/mash_sketch/mash_sketch/2.1+galaxy0                                                                                | 2020-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mapalignerposeclustering/MapAlignerPoseClustering/2.5+galaxy0                                           | 2020-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicbuildmatrix/hicexplorer_hicbuildmatrix/2.1.4.0                                                | 2020-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/iuc/egsea/egsea/1.10.0                                                                                                 | 2020-09-01 |13.0
 toolshed.g2.bx.psu.edu/repos/peterjc/mira_assembler/mira_assembler/0.0.11                                                                           | 2020-09-01 |13.0
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 CONVERTER_vcf_to_tabix_0                                                                                                                            | 2020-09-01 |12.0
 interactive_tool_cellxgene                                                                                                                          | 2020-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/3.4.4.0                                                                        | 2020-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcfannotate/vcfannotate/1.0.0_rc3+galaxy0                                                                      | 2020-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.3.0                                                             | 2020-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_nmds/mothur_nmds/1.39.5.0                                                                                   | 2020-09-01 |12.0
 CONVERTER_wig_to_bigwig                                                                                                                             | 2020-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_filter/scanpy_filter/1.4.4.post1+galaxy3                                                                    | 2020-09-01 |12.0
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 toolshed.g2.bx.psu.edu/repos/iuc/ucsc_fasplit/fasplit/357                                                                                           | 2020-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/iuc/chira_merge/chira_merge/1.4.3+galaxy0                                                                              | 2020-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/devteam/kraken_report/kraken-mpa-report/1.2.4                                                                          | 2020-09-01 |12.0
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 toolshed.g2.bx.psu.edu/repos/devteam/vcfvcfintersect/vcfvcfintersect/1.0.0_rc1+galaxy0                                                              | 2020-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/peterjc/blast2go/blast2go/0.0.9                                                                                        | 2020-09-01 |12.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.3+galaxy1                                                          | 2020-09-01 |12.0
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 tombo_resquiggle                                                                                                                                    | 2020-09-01 |12.0
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 methtools_calling                                                                                                                                   | 2020-09-01 |12.0
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 OpenSwathDecoyGenerator                                                                                                                             | 2020-09-01 |11.0
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 OpenSwathAssayGenerator                                                                                                                             | 2020-09-01 |11.0
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 interactive_tool_climate_notebook                                                                                                                   | 2020-09-01 |10.0
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 interactive_tool_pyiron                                                                                                                             | 2020-09-01 |10.0
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 hgv_david                                                                                                                                           | 2020-09-01 |9.0
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 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_build_gb/4.3+T.galaxy4                                                                               | 2020-09-01 |9.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/fpocket/fpocket/3.1.4.2+galaxy0                                                                              | 2020-09-01 |8.0
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 interactive_tool_guacamole_desktop                                                                                                                  | 2020-09-01 |8.0
 CONVERTER_bed_to_bgzip_0                                                                                                                            | 2020-09-01 |8.0
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 toolshed.g2.bx.psu.edu/repos/iuc/scanpy_plot/scanpy_plot/1.4.4.post1+galaxy2                                                                        | 2020-09-01 |8.0
 CONVERTER_bed_to_fli_0                                                                                                                              | 2020-09-01 |8.0
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 toolshed.g2.bx.psu.edu/repos/devteam/vcfprimers/vcfprimers/1.0.0_rc3+galaxy0                                                                        | 2020-09-01 |7.0
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 toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.1.5+galaxy2                                                                                        | 2020-09-01 |7.0
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 toolshed.g2.bx.psu.edu/repos/crs4/bwa_mem/bwa_mem/0.8.0                                                                                             | 2020-09-01 |7.0
 toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_NormalizeFasta/2.18.2.1                                                                          | 2020-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_md/gmx_md/2019.1                                                                                          | 2020-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/iuc/sniffles/sniffles/1.0.12+galaxy0                                                                                   | 2020-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy0                                                                                          | 2020-09-01 |6.0
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 CONVERTER_bed_to_tabix_0                                                                                                                            | 2020-09-01 |6.0
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 CONVERTER_fasta_to_2bit                                                                                                                             | 2020-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.3.0                                                                             | 2020-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/rnateam/rnashapes/RNAshapes/3.3.0                                                                                      | 2020-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peptideindexer/PeptideIndexer/2.3.0                                                                     | 2020-09-01 |6.0
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 bwtool-lift                                                                                                                                         | 2020-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.3.0                                                                                 | 2020-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17+galaxy0                                                                                     | 2020-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/devteam/vcfcombine/vcfcombine/1.0.0_rc3+galaxy0                                                                        | 2020-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/iuc/spaln/spaln/2.3.2+galaxy0                                                                                          | 2020-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_ordercells/monocle3_orderCells/0.1.4+galaxy0                                                          | 2020-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.3.0                                                                     | 2020-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peptideindexer/PeptideIndexer/2.5+galaxy0                                                               | 2020-09-01 |6.0
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 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_proteinquantifier/ProteinQuantifier/2.3.0                                                               | 2020-09-01 |6.0
 toolshed.g2.bx.psu.edu/repos/iuc/gemini_annotate/gemini_annotate/0.20.1+galaxy2                                                                     | 2020-09-01 |5.0
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 __FILTER_FAILED_DATASETS__                                                                                                                          | 2020-09-01 |5.0
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 testtoolshed.g2.bx.psu.edu/repos/messersc/jamm/jamm/1.0.7                                                                                           | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68                                                                                             | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.4.0d-2                                                                                        | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy1                                                                                | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_normalise_data/seurat_normalise_data/3.1.1+galaxy0                                                      | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.3.3.0                                                                               | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_read10x/seurat_read10x/3.1.1+galaxy1                                                                    | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/iuc/dada2_plotqualityprofile/dada2_plotQualityProfile/1.14+galaxy0                                                     | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_metastats/mothur_metastats/1.39.5.0                                                                         | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_nvt/gmx_nvt/2018.2                                                                                        | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_wiggle_to_scatter/0.69.8+galaxy7                                                                     | 2020-09-01 |5.0
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 wiggle2simple1                                                                                                                                      | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/iuc/xpath/xpath/1.0.0                                                                                                  | 2020-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/iuc/bcftools/bcftools_view/0.1.19.0                                                                                    | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.5+galaxy0                                                                           | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/iuc/medaka_consensus/medaka_consensus/1.0.3+galaxy2                                                                    | 2020-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/crs4/prokka/prokka/1.13                                                                                                | 2020-09-01 |5.0
 translate_nucleotides                                                                                                                               | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/blastxml_to_tabular/2.10.1+galaxy0                                                             | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpEff_databases/4.3+T.galaxy2                                                                              | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_merge_topology_files/gmx_merge_topology_files/3.2.0+galaxy0                                               | 2020-09-01 |5.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_cluster/scanpy_find_cluster/1.6.0+galaxy0                                                          | 2020-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.0.4                                                                                              | 2020-09-01 |5.0
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 rnalfoldz                                                                                                                                           | 2020-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_plotcells/monocle3_plotCells/0.1.5+galaxy1                                                            | 2020-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin/1.3.0+galaxy1                                                                                  | 2020-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.26                                                                           | 2020-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_topmarkers/monocle3_topmarkers/0.1.5+galaxy0                                                          | 2020-09-01 |5.0
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 toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_extract_rmsd/mdanalysis_extract_rmsd/1.0.0+galaxy0                                                 | 2020-09-01 |4.0
 toolshed.g2.bx.psu.edu/repos/devteam/tabular_to_fastq/tabular_to_fastq/1.1.5                                                                        | 2020-09-01 |4.0
 CONVERTER_fasta_to_bowtie_base_index                                                                                                                | 2020-09-01 |4.0
 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/2.2.1+galaxy1                                                                          | 2020-09-01 |4.0
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 toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.0.0                                                                                          | 2020-09-01 |4.0
 toolshed.g2.bx.psu.edu/repos/iuc/dada2_seqcounts/dada2_seqCounts/1.14+galaxy0                                                                       | 2020-09-01 |4.0
 smooth_running_window                                                                                                                               | 2020-09-01 |4.0
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 toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/3.2                                                                                                  | 2020-09-01 |4.0
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 toolshed.g2.bx.psu.edu/repos/iuc/genrich/genrich/0.5+galaxy1                                                                                        | 2020-09-01 |4.0
 toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.3.3                                                                      | 2020-09-01 |4.0
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 gene2exon1                                                                                                                                          | 2020-09-01 |4.0
 toolshed.g2.bx.psu.edu/repos/chemteam/biomd_rmsd_clustering/biomd_rmsd_clustering/0.1.5.2+galaxy0                                                   | 2020-09-01 |4.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_myrimatchadapter/MyriMatchAdapter/2.5+galaxy0                                                           | 2020-09-01 |4.0
 toolshed.g2.bx.psu.edu/repos/iuc/mitos/mitos/1.0.5                                                                                                  | 2020-09-01 |4.0
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 toolshed.g2.bx.psu.edu/repos/rnateam/splitfasta/rbc_splitfasta/0.2.0                                                                                | 2020-09-01 |4.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/circexplorer/circexplorer/1.1.9.0                                                                            | 2020-09-01 |4.0
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 toolshed.g2.bx.psu.edu/repos/chemteam/gmx_md/gmx_md/2018.2                                                                                          | 2020-09-01 |4.0
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 CONVERTER_sam_to_bigwig_0                                                                                                                           | 2020-09-01 |4.0
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 gff_filter_by_attribute                                                                                                                             | 2020-09-01 |3.0
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 CONVERTER_gff_to_fli_0                                                                                                                              | 2020-09-01 |3.0
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 toolshed.g2.bx.psu.edu/repos/iuc/snpeff/snpSift_annotate/3.4                                                                                        | 2020-09-01 |2.0
 sklearn_generalized_linear                                                                                                                          | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_tsne/scanpy_run_tsne/1.3.2+galaxy1                                                                  | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/iuc/export2graphlan/export2graphlan/0.19                                                                               | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.2.13                                                                                | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_procrad/stacks2_procrad/2.4+galaxy1                                                                        | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3                                                                                      | 2020-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_genprop/openbabel_genProp/3.1.1+galaxy0                                                            | 2020-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.2.0                                                                                 | 2020-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/iuc/gff_to_prot/gff_to_prot/3.0.2+galaxy0                                                                              | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_find_markers/scanpy_find_markers/1.4.3+galaxy6                                                          | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_genes/scanpy_filter_genes/1.3.2+galaxy1                                                          | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_umap/scanpy_run_umap/1.4.3+galaxy9                                                                  | 2020-09-01 |2.0
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 gff_to_sequence                                                                                                                                     | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/tyty/structurefold/iterative_map_pipeline/1.0                                                                          | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.5+galaxy0                                                               | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.69                                                                                             | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/iuc/vardict_java/vardict_java/1.7.0+galaxy0                                                                            | 2020-09-01 |2.0
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 wc_gnu                                                                                                                                              | 2020-09-01 |2.0
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 gbk_to_orf                                                                                                                                          | 2020-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/iuc/control_freec/control_freec/11.6+galaxy1                                                                           | 2020-09-01 |2.0
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 genbank_to_gff                                                                                                                                      | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/iuc/snippy/snippy/3.2+galaxy1                                                                                          | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.3.2+galaxy1                                                                    | 2020-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/iuc/goseq/goseq/0.2.2                                                                                                  | 2020-09-01 |2.0
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 deseq2_single                                                                                                                                       | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_pca/scanpy_run_pca/1.4.3+galaxy9                                                                    | 2020-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_run_umap/scanpy_run_umap/1.3.2+galaxy1                                                                  | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/bebatut/cdhit/cd_hit_est/1.3                                                                                           | 2020-09-01 |2.0
 __FILTER_EMPTY_DATASETS__                                                                                                                           | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idscoreswitcher/IDScoreSwitcher/2.5+galaxy0                                                             | 2020-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/tyty/structurefold/predict_pipeline/1.0                                                                                | 2020-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_learngraph/monocle3_learnGraph/0.1.4+galaxy0                                                          | 2020-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/crs4/exomedepth/exomedepth/1.1.0                                                                                       | 2020-09-01 |2.0
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 pyiron_meta                                                                                                                                         | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/diff/diff/3.6+galaxy1                                                                                        | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_read_10x/scanpy_read_10x/1.3.2+galaxy0                                                                  | 2020-09-01 |2.0
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 toolshed.g2.bx.psu.edu/repos/gga/apollo_create_or_update/create_or_update/4.2.5                                                                     | 2020-09-01 |2.0
 eden_sequence_converter                                                                                                                             | 2020-09-01 |2.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/metaquantome_expand/metaquantome_expand/2.0.0-0                                                                | 2020-09-01 |2.0
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 bed_to_bigBed                                                                                                                                       | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastq_combiner/fastq_combiner/1.1.5                                                                            | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/rnaz/rnaz/2.1.1                                                                                              | 2020-09-01 |1.0
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 vcf_to_maf_customtrack1                                                                                                                             | 2020-09-01 |1.0
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 __RELABEL_FROM_FILE__                                                                                                                               | 2020-09-01 |1.0
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 CONVERTER_bcf_uncompressed_to_bcf                                                                                                                   | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/anton/vcfcheck/vcfcheck/0.0.1                                                                                          | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/devteam/vcfcheck/vcfcheck/1.0.0_rc1+galaxy0                                                                            | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/monocle3_diffexp/monocle3_diffExp/0.1.4+galaxy1                                                                | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_histogram/ggplot2_histogram/2.2.1+galaxy0                                                                  | 2020-09-01 |1.0
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 srma_wrapper                                                                                                                                        | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_dim_plot/seurat_dim_plot/2.3.1+galaxy0                                                                  | 2020-09-01 |1.0
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 modENCODEworm                                                                                                                                       | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_find_variable_genes/seurat_find_variable_genes/2.3.1+galaxy1                                            | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/iuc/last/last_al/1021+galaxy1                                                                                          | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/iuc/cutesv/cutesv/1.0.8+galaxy0                                                                                        | 2020-09-01 |1.0
 CONVERTER_interval_to_bed6_0                                                                                                                        | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_find_markers/seurat_find_markers/2.3.1+galaxy1                                                          | 2020-09-01 |1.0
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 interactive_tool_fairdom_send                                                                                                                       | 2020-09-01 |1.0
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 ucsc_table_direct_archaea1                                                                                                                          | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/iuc/idba_ud/idba_ud/1.1.3+galaxy1                                                                                      | 2020-09-01 |1.0
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 interactive_tool_openrefine                                                                                                                         | 2020-09-01 |1.0
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 mosaik_wrapper                                                                                                                                      | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/imgteam/scale_image/ip_scale_image/0.4                                                                                 | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcfannotate/vcfannotate/1.0.0_rc1+galaxy0                                                                      | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.8+galaxy1                                                                                     | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idscoreswitcher/IDScoreSwitcher/2.2.0                                                                   | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mapalignerspectrum/MapAlignerSpectrum/2.5+galaxy0                                                       | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/iuc/scater_normalize/scater_normalize/1.12.2                                                                           | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcfcombine/vcfcombine/1.0.0_rc1+galaxy0                                                                        | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/devteam/vcfbedintersect/vcfbedintersect/1.0.0_rc1+galaxy0                                                              | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_read10x/seurat_read10x/2.3.1+galaxy1                                                                    | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idconflictresolver/IDConflictResolver/2.2.0                                                             | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_filter_cells/seurat_filter_cells/2.3.1+galaxy1                                                          | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/iuc/hisat2/hisat2/2.0.3                                                                                                | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/iuc/phyml/phyml/3.3.20190909                                                                                           | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/iuc/last/last_train/1021+galaxy1                                                                                       | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/devteam/vcfcheck/vcfcheck/1.0.0_rc3+galaxy0                                                                            | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin/0.14.1.2+galaxy1                                                                               | 2020-09-01 |1.0
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 CONVERTER_maf_to_interval_0                                                                                                                         | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/iuc/bcftools_cnv/bcftools_cnv/1.9+galaxy1                                                                              | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/iuc/stacks2_gstacks/stacks2_gstacks/2.4+galaxy1                                                                        | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_map/2.29.2.2                                                                                     | 2020-09-01 |1.0
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 gff_filter_by_feature_count                                                                                                                         | 2020-09-01 |1.0
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 raceid_main                                                                                                                                         | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/bgruening/sucos_max_score/sucos_max_score/2020.03.4+galaxy0                                                            | 2020-09-01 |1.0
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 CONVERTER_Bam_Bai_0                                                                                                                                 | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/devteam/vcfsort/vcfsort/1.0.0_rc3+galaxy0                                                                              | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/chemteam/biomd_neqgamma/biomd_neqgamma/0.1.5.2+galaxy0                                                                 | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/iuc/seq2hla/seq2hla/2.2.0                                                                                              | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idfilter/IDFilter/2.5+galaxy0                                                                           | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/2.9.0                                                                                 | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/0.2                                                                                            | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse_to_standalone/1.16.9+galaxy0                                                                       | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/chemteam/mdanalysis_hbonds/mdanalysis_hbonds/1.0.0+galaxy0                                                             | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_normalise_data/seurat_normalise_data/2.3.1+galaxy1                                                      | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.2.0                                                                                 | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/rnateam/structure_to_gspan/structure_to_gspan/0.3                                                                      | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/iuc/gatk4_mutect2/gatk4_mutect2/4.1.4.0+galaxy0                                                                        | 2020-09-01 |1.0
 svm_classifier                                                                                                                                      | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/iuc/seurat/seurat/3.1.5+galaxy1                                                                                        | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/iuc/ncbi_eutils_einfo/ncbi_eutils_einfo/1.2                                                                            | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/iuc/heinz/heinz_bum/1.0                                                                                                | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcffixup/vcffixup/1.0.0_rc3+galaxy0                                                                            | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/earlhaminst/smina/smina/1.0                                                                                            | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileconverter/FileConverter/2.1.0                                                                       | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.2.0                                                                                          | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/nspdk_sparse/9.2.2                                                                            | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/3.0.2+galaxy1                                                                                          | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_mergepe/1.3.1                                                                                          | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/devteam/vcfbedintersect/vcfbedintersect/1.0.0_rc3+galaxy0                                                              | 2020-09-01 |1.0
 qual_stats_boxplot                                                                                                                                  | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.11.0                                                                            | 2020-09-01 |1.0
 interactive_tool_askomics                                                                                                                           | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_scale_data/seurat_scale_data/2.3.1+galaxy1                                                              | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_export_cellbrowser/seurat_export_cellbrowser/2.3.1+galaxy0                                              | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/bgruening/sklearn_model_validation/sklearn_model_validation/1.0.8.2                                                    | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_filter_genes/scanpy_filter_genes/1.4.3+galaxy9                                                          | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_slayer/mothur_chimera_slayer/1.39.5.0                                                               | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/bgruening/autodock_vina_prepare_ligand/prepare_ligand/1.5.7+galaxy0                                                    | 2020-09-01 |1.0
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 tombo_text_output                                                                                                                                   | 2020-09-01 |1.0
 hgv_linkToGProfile                                                                                                                                  | 2020-09-01 |1.0
 CONVERTER_wiggle_to_interval_0                                                                                                                      | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/iuc/valet/valet/1.0.0                                                                                                  | 2020-09-01 |1.0
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 toolshed.g2.bx.psu.edu/repos/devteam/vcfaddinfo/vcfaddinfo/1.0.0_rc1+galaxy0                                                                        | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/iuc/ngsutils_bam_filter/ngsutils_bam_filter/0.5.7.0                                                                    | 2020-09-01 |1.0
 toolshed.g2.bx.psu.edu/repos/devteam/fastqtofasta/fastq_to_fasta_python/1.0.0                                                                       | 2020-09-01 |1.0
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