comparison readme.md @ 0:0370fe3cf518 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
author bgruening
date Thu, 10 Oct 2024 11:00:40 +0000 (2 months ago)
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1 # Serve locally
2
3 * Install conda/mamba
4
5 ```
6 mamba create -n planemo-env python=3.7
7 mamba activate planemo-env
8 pip install -U planemo
9 ```
10
11 ## Run DM togehter with tool
12
13 ```
14 cd <DM-path>/motus-DM
15 planemo serve data_manager/motus_db_fetcher.xml <motus_profiler PATH>/motus_profiler.xml --biocontainers --galaxy_root ~/git/galaxy
16 ```
17
18 ## Check if tool and DM work together
19
20 In Galaxy go to:
21
22 * Admin
23 * Local Data
24 * Check if DM is in **Installed Data Managers**
25 * Click it
26 * Run the tool with Database type 3.1.0
27 * Admin
28 * Data Tables
29 * motus_db_versioned
30 * Check if new table was made
31 * Go to the tool
32 * Check if new table can be found by: `A pre-installed mOTUs database`