Mercurial > repos > bgruening > data_manager_motus
comparison readme.md @ 0:0370fe3cf518 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/data_managers/ commit f42263c2875a78500f141027803a38606ecb0f14
author | bgruening |
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date | Thu, 10 Oct 2024 11:00:40 +0000 (2 months ago) |
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-1:000000000000 | 0:0370fe3cf518 |
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1 # Serve locally | |
2 | |
3 * Install conda/mamba | |
4 | |
5 ``` | |
6 mamba create -n planemo-env python=3.7 | |
7 mamba activate planemo-env | |
8 pip install -U planemo | |
9 ``` | |
10 | |
11 ## Run DM togehter with tool | |
12 | |
13 ``` | |
14 cd <DM-path>/motus-DM | |
15 planemo serve data_manager/motus_db_fetcher.xml <motus_profiler PATH>/motus_profiler.xml --biocontainers --galaxy_root ~/git/galaxy | |
16 ``` | |
17 | |
18 ## Check if tool and DM work together | |
19 | |
20 In Galaxy go to: | |
21 | |
22 * Admin | |
23 * Local Data | |
24 * Check if DM is in **Installed Data Managers** | |
25 * Click it | |
26 * Run the tool with Database type 3.1.0 | |
27 * Admin | |
28 * Data Tables | |
29 * motus_db_versioned | |
30 * Check if new table was made | |
31 * Go to the tool | |
32 * Check if new table can be found by: `A pre-installed mOTUs database` |