annotate data_manager/data_manager_semibin.xml @ 0:1e4dd26db773 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_semibin commit aa9bfb2fb62547ee8bac34f0de5b3beaa0bfd1a4"

<tool id="data_manager_semibin" name="Download reference genomes (GTDB) for SemiBin" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description></description>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">semibin</requirement>
    </requirements>
    <macros>
        <token name="@TOOL_VERSION@">1.1.1</token>
        <token name="@VERSION_SUFFIX@">0</token>
        <token name="@PROFILE@">21.01</token>
    </macros>
    <command detect_errors="exit_code"><![CDATA[
python '$__tool_directory__/data_manager_semibin.py'
    --json '$out_file'
    $type
    ]]></command>
    <inputs>
        <param name="type" type="hidden" value="" />
    </inputs>
    <outputs>
        <data name="out_file" format="data_manager_json"/>
    </outputs>
    <tests>
    <test expect_num_outputs="1">
        <param name="type" value="--test" />
        <output name="out_file">
            <assert_contents>
                <has_text text="test"/>
                <has_text text="Test"/>
            </assert_contents>
        </output>
    </test>
    </tests>
    <help><![CDATA[
This tool downloads reference genomes (GTDB) for SemiBin
    ]]></help>
    <citations>
        <citation type="doi">10.1038/s41467-022-29843-y</citation>
    </citations>
</tool>