Mercurial > repos > bgruening > deeptools_alignmentsieve
comparison alignmentSieve.xml @ 11:d8c919d26d0e draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit e7e3025eb4fffe5deb34c12a6d402d79241d9ed5
| author | bgruening |
|---|---|
| date | Fri, 19 May 2023 08:34:00 +0000 |
| parents | ea8efdcf151f |
| children | 2b1413e30889 |
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| 10:e5a296ce8fbb | 11:d8c919d26d0e |
|---|---|
| 134 <tests> | 134 <tests> |
| 135 <test> | 135 <test> |
| 136 <param name="bamfile" value="paired_chr2L.bam" ftype="bam" /> | 136 <param name="bamfile" value="paired_chr2L.bam" ftype="bam" /> |
| 137 <param name="minMappingQuality" value="10" /> | 137 <param name="minMappingQuality" value="10" /> |
| 138 <param name="filterMetrics" value="True" /> | 138 <param name="filterMetrics" value="True" /> |
| 139 <output name="outFile" file="alignmentSieve.bam" ftype="bam" /> | 139 <output name="outFile" file="alignmentSieve.bam" ftype="bam" lines_diff="1" /> |
| 140 <output name="filterMetricsFile" file="alignmentSieve.txt" ftype="tabular" /> | 140 <output name="filterMetricsFile" file="alignmentSieve.txt" ftype="tabular" /> |
| 141 </test> | 141 </test> |
| 142 <test> | 142 <test> |
| 143 <param name="bamfile" value="paired_chr2L.bam" ftype="bam" /> | 143 <param name="bamfile" value="paired_chr2L.bam" ftype="bam" /> |
| 144 <param name="minMappingQuality" value="10" /> | 144 <param name="minMappingQuality" value="10" /> |
| 148 </test> | 148 </test> |
| 149 <test> | 149 <test> |
| 150 <param name="bamfile" value="paired_chr2L.bam" ftype="bam" /> | 150 <param name="bamfile" value="paired_chr2L.bam" ftype="bam" /> |
| 151 <param name="minMappingQuality" value="10" /> | 151 <param name="minMappingQuality" value="10" /> |
| 152 <param name="shift" value="1 -2 3 -4" /> | 152 <param name="shift" value="1 -2 3 -4" /> |
| 153 <output name="outFile" file="alignmentSieve2.bam" ftype="bam" /> | 153 <output name="outFile" file="alignmentSieve2.bam" ftype="bam" lines_diff="2" /> |
| 154 </test> | 154 </test> |
| 155 <test> | 155 <test> |
| 156 <param name="bamfile" value="paired_chr2L.cram" ftype="cram" /> | 156 <param name="bamfile" value="paired_chr2L.cram" ftype="cram" /> |
| 157 <param name="minMappingQuality" value="10" /> | 157 <param name="minMappingQuality" value="10" /> |
| 158 <param name="shift" value="1 -2 3 -4" /> | 158 <param name="shift" value="1 -2 3 -4" /> |
| 159 <output name="outFile" file="alignmentSieve3.bam" ftype="bam" /> | 159 <output name="outFile" file="alignmentSieve3.bam" ftype="bam" lines_diff="2" /> |
| 160 </test> | 160 </test> |
| 161 </tests> | 161 </tests> |
| 162 | 162 |
| 163 <help> | 163 <help> |
| 164 <![CDATA[ | 164 <![CDATA[ |