Mercurial > repos > bgruening > deeptools_alignmentsieve

diff alignmentSieve.xml @ 11:d8c919d26d0e draft

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planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit e7e3025eb4fffe5deb34c12a6d402d79241d9ed5
author bgruening
date Fri, 19 May 2023 08:34:00 +0000
parents ea8efdcf151f
children 2b1413e30889
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--- a/alignmentSieve.xml	Fri Feb 11 16:01:39 2022 +0000
+++ b/alignmentSieve.xml	Fri May 19 08:34:00 2023 +0000
@@ -136,7 +136,7 @@
             <param name="bamfile" value="paired_chr2L.bam" ftype="bam" />
             <param name="minMappingQuality" value="10" />
             <param name="filterMetrics" value="True" />
-            <output name="outFile" file="alignmentSieve.bam" ftype="bam" />
+            <output name="outFile" file="alignmentSieve.bam" ftype="bam" lines_diff="1" />
             <output name="filterMetricsFile" file="alignmentSieve.txt" ftype="tabular" />
         </test>
         <test>
@@ -150,13 +150,13 @@
             <param name="bamfile" value="paired_chr2L.bam" ftype="bam" />
             <param name="minMappingQuality" value="10" />
             <param name="shift" value="1 -2 3 -4" />
-            <output name="outFile" file="alignmentSieve2.bam" ftype="bam" />
+            <output name="outFile" file="alignmentSieve2.bam" ftype="bam" lines_diff="2" />
         </test>
         <test>
             <param name="bamfile" value="paired_chr2L.cram" ftype="cram" />
             <param name="minMappingQuality" value="10" />
             <param name="shift" value="1 -2 3 -4" />
-            <output name="outFile" file="alignmentSieve3.bam" ftype="bam" />
+            <output name="outFile" file="alignmentSieve3.bam" ftype="bam" lines_diff="2" />
         </test>
     </tests>