Mercurial > repos > bgruening > deeptools_bam_compare
changeset 23:c09c23eaf116 draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 3cefc7d64faa53ef9a4e5984c7b275fc47cbdaaf
| author | bgruening |
|---|---|
| date | Wed, 20 Feb 2019 08:00:54 -0500 |
| parents | 59cbb059cd1e |
| children | 5f6d123679f4 |
| files | bamCompare.xml deepTools_macros.xml test-data/estimateReadFiltering.txt |
| diffstat | 3 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/bamCompare.xml Tue Feb 19 10:03:16 2019 -0500 +++ b/bamCompare.xml Wed Feb 20 08:00:54 2019 -0500 @@ -166,8 +166,8 @@ <expand macro="skipNAs" /> <param argument="--skipZeroOverZero" type="select" label="Skip bins of no coverage" help="Skip bins where BOTH files lack coverage."> - <option value="no" selected="true">No</option> - <option value="yes">Yes, skip them.</option> + <option value="" selected="true">No</option> + <option value="--skipZeroOverZero">Yes, skip them.</option> </param> <param argument="--ignoreForNormalization" type="text" value="" size="50"
--- a/deepTools_macros.xml Tue Feb 19 10:03:16 2019 -0500 +++ b/deepTools_macros.xml Wed Feb 20 08:00:54 2019 -0500 @@ -512,7 +512,7 @@ <token name="@multiple_input_bigwigs@"> <![CDATA[ - #if $custom_labels_conditional.custom_labels_select == "Yes": + #if $custom_sample_labels_conditional.custom_labels_select == "Yes": #set custom_labels=labels #end if #set files=[] @@ -533,7 +533,7 @@ #silent $labels.append("'%s'" % $identifier) #end for #end if - #if $custom_labels_conditional.custom_labels_select == "Yes": + #if $custom_sample_labels_conditional.custom_labels_select == "Yes": #set labels=custom_labels #end if ]]>
--- a/test-data/estimateReadFiltering.txt Tue Feb 19 10:03:16 2019 -0500 +++ b/test-data/estimateReadFiltering.txt Wed Feb 20 08:00:54 2019 -0500 @@ -1,3 +1,3 @@ Sample Total Reads Mapped Reads Alignments in blacklisted regions Estimated mapped reads filtered Below MAPQ Missing Flags Excluded Flags Internally-determined Duplicates Marked Duplicates Singletons Wrong strand -paired_chr2L.bam 12644 12589 0 1395.9 4149.0 0.0 0.0 0.0 0.0 55.0 0.0 -paired_chr2L.bam 12644 12589 0 1395.9 4149.0 0.0 0.0 0.0 0.0 55.0 0.0 +paired_chr2L.bam 12644 12589 0 4192.0 4149.0 0.0 0.0 0.0 0.0 55.0 0.0 +paired_chr2L.bam 12644 12589 0 4192.0 4149.0 0.0 0.0 0.0 0.0 55.0 0.0