Mercurial > repos > bgruening > deeptools_compute_matrix
comparison computeMatrix.xml @ 10:6f334c8bd52f draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0eeb2e1a184186ba5ac044136e71b943e2af0f09
| author | bgruening |
|---|---|
| date | Mon, 05 Dec 2016 08:12:43 -0500 |
| parents | aee77c22123d |
| children | babca70c3586 |
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| 9:4b3adcb7c7e9 | 10:6f334c8bd52f |
|---|---|
| 85 ]]> | 85 ]]> |
| 86 </command> | 86 </command> |
| 87 <inputs> | 87 <inputs> |
| 88 | 88 |
| 89 <repeat name="regionsFiles" title="Select regions" min="1"> | 89 <repeat name="regionsFiles" title="Select regions" min="1"> |
| 90 <param name="regionsFile" format="bed" type="data" label="Regions to plot" | 90 <param name="regionsFile" format="bed,gtf" type="data" label="Regions to plot" |
| 91 help="File, in BED format, containing the regions to plot."/> | 91 help="File, in BED format, containing the regions to plot."/> |
| 92 </repeat> | 92 </repeat> |
| 93 | 93 |
| 94 <param name="scoreFileName" format="bigwig" type="data" | 94 <param name="scoreFileName" format="bigwig" type="data" |
| 95 label="Score file" multiple="True" | 95 label="Score file" multiple="True" |
| 170 <when value="yes"> | 170 <when value="yes"> |
| 171 <param name="binSize" type="integer" value="50" min="1" | 171 <param name="binSize" type="integer" value="50" min="1" |
| 172 label="Length, in bases, of non-overlapping bins used for averaging the score over the regions length" | 172 label="Length, in bases, of non-overlapping bins used for averaging the score over the regions length" |
| 173 help="(--binSize)"/> | 173 help="(--binSize)"/> |
| 174 | 174 |
| 175 <expand macro="sortRegions" /> | 175 <expand macro="sortRegionsComputeMatrix" /> |
| 176 <expand macro="sortUsing" /> | 176 <expand macro="sortUsing" /> |
| 177 | 177 |
| 178 <param name="averageTypeBins" type="select" | 178 <param name="averageTypeBins" type="select" |
| 179 label="Define the type of statistic that should be displayed." | 179 label="Define the type of statistic that should be displayed." |
| 180 help="The value is computed for each bin. (--averageTypeBins)"> | 180 help="The value is computed for each bin. (--averageTypeBins)"> |