Mercurial > repos > bgruening > deeptools_compute_matrix
changeset 18:b357ab778a71 draft
planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 72ae8f62333aa38d1c63034ddb37184a0f72c64e-dirty
| author | bgruening |
|---|---|
| date | Fri, 02 Mar 2018 16:30:24 -0500 |
| parents | 79bc5d836c75 |
| children | fb9cf9c97ec4 |
| files | computeMatrix.xml deepTools_macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/computeMatrix.xml Thu Feb 15 15:06:39 2018 -0500 +++ b/computeMatrix.xml Fri Mar 02 16:30:24 2018 -0500 @@ -21,7 +21,7 @@ $mode.mode_select --regionsFileName '#echo "' '".join($bed_files)#' - --scoreFileName '#echo "' '".join($files)#' + --scoreFileName #echo ' '.join($files)# --outFileName '$outFileName'
--- a/deepTools_macros.xml Thu Feb 15 15:06:39 2018 -0500 +++ b/deepTools_macros.xml Fri Mar 02 16:30:24 2018 -0500 @@ -1,10 +1,10 @@ <macros> <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> - <token name="@WRAPPER_VERSION@">3.0.0</token> + <token name="@WRAPPER_VERSION@">3.0.1</token> <xml name="requirements"> <requirements> - <requirement type="package" version="3.0.0">deeptools</requirement> + <requirement type="package" version="3.0.1">deeptools</requirement> <requirement type="package" version="1.7">samtools</requirement> </requirements> <expand macro="stdio" /> @@ -456,7 +456,6 @@ #for $counter, $f in enumerate($multibam_conditional.multibam_repeats): #set identifier = re.sub('[^\.\s\w\-]', '_', str($f.bamfiles.element_identifier)) ln -s "${f.bamfiles}" "./${counter}.bam" && - ln -s "${f.bamfiles.metadata.bam_index}" "./${counter}.bam.bai" && #if $f.bamfiles.ext == 'bam': ln -s '${f.bamfiles.metadata.bam_index}' './${counter}.bam.bai' && #else: