changeset 21:2a8ca4863f1d draft

planemo upload for repository https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/ commit 3024062b63fdc502b46e4f328083493c2274182a
author bgruening
date Wed, 22 Aug 2018 17:45:47 -0400
parents 6e4c17379a40
children 46992aa30bd6
files deepTools_macros.xml plotHeatmap.xml test-data/plotPCA_result1.png test-data/plotPCA_result2.png
diffstat 4 files changed, 6 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/deepTools_macros.xml	Mon Jul 09 19:13:59 2018 -0400
+++ b/deepTools_macros.xml	Wed Aug 22 17:45:47 2018 -0400
@@ -1,10 +1,10 @@
 <macros>
 
     <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@WRAPPER_VERSION@">3.1.0</token>
+    <token name="@WRAPPER_VERSION@">3.1.2.0</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="3.1.0">deeptools</requirement>
+            <requirement type="package" version="3.1.2">deeptools</requirement>
             <requirement type="package" version="1.7">samtools</requirement>
         </requirements>
         <expand macro="stdio" />
@@ -216,7 +216,7 @@
             label="Use a metagene model"
             help="If set and a BED12 or GTF file or files is used to provide regions, only exons will be used. This is convenient for looking at coverage over mature mRNA transcripts or similar uses where introns should be ignored." />
         <param argument="--transcriptID" optional="True" value="transcript" type="text"
-            label="trascript designator"
+            label="transcript designator"
             help="When a GTF file is used to provide regions, only entries with this value as their feature (column 2) will be processed as transcripts. Default: transcript" />
         <param argument="--exonID" optional="True" value="exon" type="text"
             label="exon designator"
@@ -654,7 +654,7 @@
     </xml>
 
     <xml name="output_image_file_format">
-        <data format="png" name="outFileName" label="${tool.name} image">
+        <data format="png" name="outFileName" label="${tool.name} on ${on_string}: Image">
             <change_format>
                 <when input="output.outFileFormat" value="pdf" format="pdf" />
                 <when input="output.outFileFormat" value="svg" format="svg" />
@@ -665,7 +665,7 @@
     </xml>
 
     <xml name="output_image_file_format_not_nested">
-        <data format="png" name="outFileName" label="${tool.name} image">
+        <data format="png" name="outFileName" label="${tool.name} on ${on_string}: Image">
             <change_format>
                 <when input="outFileFormat" value="pdf" format="pdf" />
                 <when input="outFileFormat" value="svg" format="svg" />
--- a/plotHeatmap.xml	Mon Jul 09 19:13:59 2018 -0400
+++ b/plotHeatmap.xml	Wed Aug 22 17:45:47 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="deeptools_plot_heatmap" name="plotHeatmap" version="@WRAPPER_VERSION@.0">
+<tool id="deeptools_plot_heatmap" name="plotHeatmap" version="@WRAPPER_VERSION@.0" profile="18.01">
     <description>creates a heatmap for score distributions across genomic regions</description>
     <macros>
         <token name="@BINARY@">plotHeatmap</token>
Binary file test-data/plotPCA_result1.png has changed
Binary file test-data/plotPCA_result2.png has changed