annotate Compute_and_correct_GC_bias.ga @ 0:16fc7f46ee23 draft default tip

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author bgruening
date Thu, 03 Apr 2014 11:11:15 -0400
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4 "format-version": "0.1",
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5 "name": "Compute and correct GC bias",
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6 "steps": {
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15 }
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16 ],
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17 "name": "Input dataset",
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18 "outputs": [],
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27 "type": "data_input",
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37 }
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38 },
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39 "inputs": [
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40 {
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41 "description": "runtime parameter for tool computeGCBias",
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42 "name": "region"
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45 "description": "runtime parameter for tool computeGCBias",
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49 "description": "runtime parameter for tool computeGCBias",
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53 "description": "runtime parameter for tool computeGCBias",
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60 ],
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61 "name": "computeGCBias",
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62 "outputs": [
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103 "inputs": [
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108 {
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109 "description": "runtime parameter for tool correctGCBias",
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110 "name": "source"
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111 },
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112 {
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113 "description": "runtime parameter for tool correctGCBias",
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114 "name": "effectiveGenomeSize"
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115 }
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116 ],
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117 "name": "correctGCBias",
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118 "outputs": [
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138 "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/deeptools/deeptools_correctGCBias/1.1.0",
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139 "tool_state": "{\"__page__\": 0, \"region\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"bamInput\": \"null\", \"source\": \"{\\\"input1_2bit\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"ref_source\\\": \\\"cached\\\", \\\"__current_case__\\\": 0}\", \"effectiveGenomeSize\": \"{\\\"effectiveGenomeSize_opt\\\": \\\"specific\\\", \\\"effectiveGenomeSize\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 0}\", \"GCbiasFrequenciesFile\": \"null\", \"advancedOpt\": \"{\\\"showAdvancedOpt\\\": \\\"yes\\\", \\\"__current_case__\\\": 1, \\\"binSize\\\": \\\"50\\\"}\", \"__rerun_remap_job_id__\": null}",
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140 "tool_version": "1.1.0",
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141 "type": "tool",
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142 "user_outputs": []
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143 }
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