annotate test-data/ele_pre.asm2_gfastats.txt @ 0:8c99976de71e draft

planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit e9db2e88e55a442d7f8fdb5e8e86330410d2e92d

+++Assembly summary+++: 
Expected genome size: 3013249396
# scaffolds: 555
Total scaffold length: 3238925270
Average scaffold length: 5835901.39
Scaffold N50: 116290662
Scaffold auN: 129007713.10
Scaffold L50: 10
Scaffold NG50: 125802197
Scaffold auNG: 138669684.14
Scaffold LG50: 9
Largest scaffold: 240286497
Smallest scaffold: 5000
# contigs: 632
Total contig length: 3235415746
Average contig length: 5119328.71
Contig N50: 88190939
Contig auN: 98728369.04
Contig L50: 12
Contig NG50: 88213608
Contig auNG: 106007594.40
Contig LG50: 11
Largest contig: 234471621
Smallest contig: 1506
# gaps in scaffolds: 77
Total gap length in scaffolds: 3509524
Average gap length in scaffolds: 45578.23
Gap N50 in scaffolds: 1893595
Gap auN in scaffolds: 1109381.96
Gap L50 in scaffolds: 1
Largest gap in scaffolds: 1893595
Smallest gap in scaffolds: 13
Base composition (A:C:G:T): 950023619:669435937:665265498:950690692
GC content %: 41.25
# soft-masked bases: 0
# segments: 632
Total segment length: 3235415746
Average segment length: 5119328.71
# gaps: 77
# paths: 555
Scaffold N10: 234471621
Scaffold N20: 209119963
Scaffold N30: 164853315
Scaffold N40: 134179787
Scaffold N50: 116290662
Scaffold N60: 93312721
Scaffold N70: 84883371
Scaffold N80: 80300231
Scaffold N90: 65267526
Scaffold N100: 5000
Scaffold L10: 2
Scaffold L20: 3
Scaffold L30: 5
Scaffold L40: 7
Scaffold L50: 10
Scaffold L60: 13
Scaffold L70: 17
Scaffold L80: 21
Scaffold L90: 25
Scaffold L100: 555
Scaffold NG10: 234471621
Scaffold NG20: 209119963
Scaffold NG30: 164853315
Scaffold NG40: 134179787
Scaffold NG50: 125802197
Scaffold NG60: 96796698
Scaffold NG70: 85267550
Scaffold NG80: 82835581
Scaffold NG90: 79589986
Scaffold NG100: 37243292
Scaffold LG10: 2
Scaffold LG20: 3
Scaffold LG30: 5
Scaffold LG40: 7
Scaffold LG50: 9
Scaffold LG60: 12
Scaffold LG70: 15
Scaffold LG80: 18
Scaffold LG90: 22
Scaffold LG100: 27
Contig N10: 204044015
Contig N20: 160573602
Contig N30: 122210704
Contig N40: 116110962
Contig N50: 88190939
Contig N60: 72901558
Contig N70: 47659775
Contig N80: 35818318
Contig N90: 20408791
Contig N100: 1506
Contig L10: 2
Contig L20: 4
Contig L30: 6
Contig L40: 9
Contig L50: 12
Contig L60: 16
Contig L70: 21
Contig L80: 30
Contig L90: 40
Contig L100: 632
Contig NG10: 204044015
Contig NG20: 164853315
Contig NG30: 122210704
Contig NG40: 116290662
Contig NG50: 88213608
Contig NG60: 77872504
Contig NG70: 58969899
Contig NG80: 40048101
Contig NG90: 34729504
Contig NG100: 6573539
Contig LG10: 2
Contig LG20: 3
Contig LG30: 6
Contig LG40: 8
Contig LG50: 11
Contig LG60: 14
Contig LG70: 19
Contig LG80: 25
Contig LG90: 33
Contig LG100: 49
Gap N10: 1893595
Gap N20: 1893595
Gap N30: 1893595
Gap N40: 1893595
Gap N50: 1893595
Gap N60: 323721
Gap N70: 312502
Gap N80: 146315
Gap N90: 99478
Gap N100: 13
Gap L10: 1
Gap L20: 1
Gap L30: 1
Gap L40: 1
Gap L50: 1
Gap L60: 2
Gap L70: 3
Gap L80: 5
Gap L90: 8
Gap L100: 77