view test-data/short_summary.specific.mammalia_odb10.post.asm2.txt @ 1:b61022e1b807 draft default tip

planemo upload for repository https://github.com/ERGA-consortium/EARs/tree/main commit b7f4b9b05946009ced0c4faeadc7acca98a90131
author bgruening
date Tue, 09 Jul 2024 07:48:46 +0000
parents 8c99976de71e
children
line wrap: on
line source

# BUSCO version is: 5.4.7 
# The lineage dataset is: mammalia_odb10 (Creation date: 2021-02-19, number of genomes: 24, number of BUSCOs: 9226)
# Summarized benchmarking in BUSCO notation for file /scratch/ddepanis/Elephant_project/mEleMax1.2/curated/1_evaluation/ele_post/ASSEMBLY_FASTAS/ele_post.asm2.fasta
# BUSCO was run in mode: euk_genome_met
# Gene predictor used: metaeuk

	***** Results: *****

	C:93.6%[S:92.8%,D:0.8%],F:1.1%,M:5.3%,n:9226	   
	8639	Complete BUSCOs (C)			   
	8566	Complete and single-copy BUSCOs (S)	   
	73	Complete and duplicated BUSCOs (D)	   
	104	Fragmented BUSCOs (F)			   
	483	Missing BUSCOs (M)			   
	9226	Total BUSCO groups searched		   

Assembly Statistics:
	91	Number of scaffolds
	153	Number of contigs
	3140900549	Total length
	0.017%	Percent gaps
	125 MB	Scaffold N50
	88 MB	Contigs N50


Dependencies and versions:
	hmmsearch: 3.1
	bbtools: 39.01
	metaeuk: 6.a5d39d9
	busco: 5.4.7