annotate find_three_genes_located_nearby.ga @ 3:bc9034068988 draft default tip

Uploaded
author bgruening
date Tue, 17 Mar 2015 13:39:53 -0400
parents 12a1efdaeb5b
children
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1 {
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2 "a_galaxy_workflow": "true",
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3 "annotation": "Input are two protein genes in FASTA format. They will be blasted with tblastn against the NCBI NR database. Both results are compared and hits are returned that are close to each other.",
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4 "format-version": "0.1",
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5 "name": "Finding 3 genes close to each other",
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6 "steps": {
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7 "0": {
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8 "annotation": "",
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9 "id": 0,
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10 "input_connections": {},
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11 "inputs": [
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12 {
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13 "description": "",
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14 "name": "Nucleotide Reference Database"
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15 }
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16 ],
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17 "name": "Input dataset",
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18 "outputs": [],
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19 "position": {
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20 "left": 289,
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21 "top": 247
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22 },
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25 "tool_state": "{\"name\": \"Nucleotide Reference Database\"}",
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26 "tool_version": null,
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27 "type": "data_input",
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28 "user_outputs": []
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29 },
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30 "1": {
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31 "annotation": "",
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32 "id": 1,
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33 "input_connections": {},
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34 "inputs": [
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35 {
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36 "description": "",
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37 "name": "Protein in FASTA format"
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38 }
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39 ],
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40 "name": "Input dataset",
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41 "outputs": [],
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48 "tool_state": "{\"name\": \"Protein in FASTA format\"}",
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49 "tool_version": null,
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50 "type": "data_input",
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51 "user_outputs": []
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52 },
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53 "2": {
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54 "annotation": "",
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55 "id": 2,
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57 "inputs": [
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58 {
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59 "description": "",
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60 "name": "Protein in FASTA format"
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61 }
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62 ],
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63 "name": "Input dataset",
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64 "outputs": [],
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71 "tool_state": "{\"name\": \"Protein in FASTA format\"}",
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73 "type": "data_input",
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75 },
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76 "3": {
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77 "annotation": "",
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78 "id": 3,
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82 "description": "",
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83 "name": "Protein in FASTA format"
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84 }
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85 ],
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86 "name": "Input dataset",
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108 "inputs": [],
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109 "name": "NCBI BLAST+ makeblastdb",
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115 ],
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141 },
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142 "query": {
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145 }
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146 },
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147 "inputs": [],
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148 "name": "NCBI BLAST+ tblastn",
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149 "outputs": [
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150 {
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151 "name": "output1",
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152 "type": "tabular"
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153 }
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154 ],
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180 },
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184 }
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185 },
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186 "inputs": [],
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192 }
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193 ],
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