Mercurial > repos > bgruening > flye
changeset 1:cd256484eb1a draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/flye commit 6cd5f829f985631f0e8360d66a73206389101171
| author | bgruening |
|---|---|
| date | Fri, 28 Sep 2018 19:18:54 -0400 |
| parents | d9f4c141d88a |
| children | 156e0da5b917 |
| files | flye.xml |
| diffstat | 1 files changed, 12 insertions(+), 2 deletions(-) [+] |
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--- a/flye.xml Tue Sep 25 05:24:27 2018 -0400 +++ b/flye.xml Fri Sep 28 19:18:54 2018 -0400 @@ -9,7 +9,17 @@ <![CDATA[ #for $counter, $input in enumerate($inputs): - ln -s '$input' ./input_${counter}.${input.ext} && + + #if $input.is_of_type('fastqsanger', 'fastq'): + #set $ext = 'fastq' + #elif $input.is_of_type('fastqsanger.gz'): + #set $ext = 'fastq.gz' + #elif $input.is_of_type('fasta.gz'): + #set $ext = 'fasta.gz' + #elif $input.is_of_type('fasta'): + #set $ext = 'fasta' + #end if + ln -s '$input' ./input_${counter}.${ext} && #end for flye @@ -28,7 +38,7 @@ 2>&1 ]]></command> <inputs> - <param name="inputs" type="data" format="fasta,fasta.gz,fastq,fastq.gz" multiple="true" label="Input reads" /> + <param name="inputs" type="data" format="fasta,fasta.gz,fastq,fastq.gz,fastqsanger.gz,fastqsanger" multiple="true" label="Input reads" /> <param name="mode" type="select" label="Mode"> <option value="--nano-raw">Nanopore raw</option> <option value="--nano-corr">Nanopore corrected</option>