Mercurial > repos > bgruening > gfastats

comparison test-data/test_04_stats.tabular @ 1:2b8b4cacb83d draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 8a11d204376d9daea8026f1b33a53f40fc693bf2"
author bgruening
date Mon, 25 Apr 2022 09:38:18 +0000
parents 5799092ffdff
children 8ccbf07a5433
comparison
equal deleted inserted replaced
0:5799092ffdff 1:2b8b4cacb83d
7 Scaffold L50 1 7 Scaffold L50 1
8 Scaffold NG50 417540 8 Scaffold NG50 417540
9 Scaffold auNG 290571.00 9 Scaffold auNG 290571.00
10 Scaffold LG50 1 10 Scaffold LG50 1
11 Largest scaffold 417540 11 Largest scaffold 417540
12 # contigs 6
13 Total contig length 419573 12 Total contig length 419573
14 Average contig length 69928.83 13 Average contig length 69928.83
15 Contig N50 416949 14 Contig N50 416949
16 Contig auN 414345.81 15 Contig auN 414345.81
17 Contig L50 1 16 Contig L50 1
18 Contig NG50 416949 17 Contig NG50 416949
19 Contig auNG 289747.19 18 Contig auNG 289747.19
20 Contig LG50 1 19 Contig LG50 1
21 Largest contig 416949 20 Largest contig 416949
22 # gaps 3 21 # gaps in scaffolds 3
23 Total gap length 3 22 Total gap length in scaffolds 3
24 Average gap length 1.00 23 Average gap length in scaffolds 1.00
25 Gap N50 1 24 Gap N50 in scaffolds 1
26 Gap auN 1.00 25 Gap auN in scaffolds 1.00
27 Gap L50 2 26 Gap L50 in scaffolds 2
28 Largest gap 1 27 Largest gap in scaffolds 1
29 Base composition (ACGT) 102144, 112550, 104859, 100020 28 Base composition (A:C:G:T) 102144:112550:104859:100020
30 GC content % 51.82 29 GC content % 51.82
31 # soft-masked bases 0 30 # soft-masked bases 0
31 # segments 6
32 Total segment length 419573
33 Average segment length 69928.83
34 # gaps 3
32 # paths 3 35 # paths 3
33 Scaffold N10 417540 36 Scaffold N10 417540
34 Scaffold N20 417540 37 Scaffold N20 417540
35 Scaffold N30 417540 38 Scaffold N30 417540
36 Scaffold N40 417540 39 Scaffold N40 417540