Mercurial > repos > bgruening > gfastats
changeset 6:690c2caa367e draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gfastats commit 10ccc47885ce71e602d66e157bd475f1facbd042
| author | bgruening |
|---|---|
| date | Mon, 05 Dec 2022 12:20:31 +0000 |
| parents | 5127a713de83 |
| children | 3ef480892a9f |
| files | gfastats.xml macros.xml |
| diffstat | 2 files changed, 5 insertions(+), 2 deletions(-) [+] |
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--- a/gfastats.xml Fri Sep 30 19:23:58 2022 +0000 +++ b/gfastats.xml Mon Dec 05 12:20:31 2022 +0000 @@ -33,6 +33,7 @@ #if $mode_condition.homopolymer_compress --homopolymer-compress $mode_condition.homopolymer_compress #end if + $mode_condition.discover_paths -o dataset.$mode_condition.output_condition.out_format #if $mode_condition.output_condition.out_format == 'fasta' #if $mode_condition.output_condition.line_length @@ -129,7 +130,9 @@ <when value="fastq.gz"/> <when value="gfa"/> <when value="gfa.gz"/> - </conditional> + </conditional> + <param argument="--discover-paths" type="boolean" truevalue="--discover-paths" falsevalue="" checked="false" label="Generates the initial set of paths" help="In the graph space an assembly + is a collection of segment and edges/gaps between these segments. A path defines a potential walk through the segments and edges/gaps that corresponds to a hypothesis of the actual linear sequence" /> <param argument="--sort" type="select" label="Sort sequences" help="Specify how to sort the sequences. Ascending/descending used the sequence/path header."> <option value="" selected="true">Disabled</option> <option value="ascending">Ascending</option>
--- a/macros.xml Fri Sep 30 19:23:58 2022 +0000 +++ b/macros.xml Mon Dec 05 12:20:31 2022 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">1.3.5</token> - <token name="@SUFFIX_VERSION@">0</token> + <token name="@SUFFIX_VERSION@">2</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">gfastats</requirement>