Mercurial > repos > bgruening > glimmer_hmm

comparison glimmerHMM/glimmerhmm_to_sequence.xml @ 1:4da91bb244dc draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 2effed877a778e455c63a76e994a0f2bb8f4dba0
author rmarenco
date Thu, 14 Jul 2016 15:11:33 -0400
parents c9699375fcf6
children
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0:c9699375fcf6 1:4da91bb244dc
1 <tool id="glimmerhmm_to_sequence" name="GlimmerHMM to Sequence" version="0.1"> 1 <tool id="glimmerhmm_to_sequence" name="GlimmerHMM to Sequence" version="0.1">
2 <description>converter</description> 2 <description>converter</description>
3 <command interpreter='python'> 3 <command interpreter='python'>glimmerhmm_to_sequence.py
4 <![CDATA[ 4 $glimmerhmm_input
5 glimmerhmm_to_sequence.py 5 $genome_input
6 $glimmerhmm_input 6 $output
7 $genome_input 7 $to_protein
8 $output
9 $to_protein
10 ]]>
11 </command> 8 </command>
12 <inputs> 9 <inputs>
13 <param name="genome_input" type="data" format="fasta" label="Genome Sequence" /> 10 <param name="genome_input" type="data" format="fasta" label="Genome Sequence" />
14 <param name="glimmerhmm_input" type="data" format="gff" label="GlimmerHmm result File" /> 11 <param name="glimmerhmm_input" type="data" format="gff" label="GlimmerHmm result File" />
15 <param name="to_protein" type="boolean" label="Convert to protein sequence" truevalue="True" falsevalue="False" checked="false" /> 12 <param name="to_protein" type="boolean" label="Convert to protein sequence" truevalue="True" falsevalue="False" checked="false" />
16 </inputs> 13 </inputs>
17 <outputs> 14 <outputs>
18 <data name="output" format="fasta" /> 15 <data name="output" format="fasta" />
19 </outputs> 16 </outputs>
20 <help> 17 <help>
21 <![CDATA[
22 18
23 **What it does** 19 **What it does**
24 20
25 It converts the GlimmerHMM GFF output to a Fasta File. 21 It converts the GlimmerHMM GFF output to a Fasta File.
26 22
27 ]]>
28 </help> 23 </help>
29 </tool> 24 </tool>