diff glimmerHMM/glimmerhmm_to_sequence.xml @ 0:c9699375fcf6 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/glimmerHMM/glimmerhmm_to_sequence.xml	Wed Jul 13 10:55:48 2016 -0400
@@ -0,0 +1,29 @@
+<tool id="glimmerhmm_to_sequence" name="GlimmerHMM to Sequence" version="0.1">
+    <description>converter</description>
+    <command interpreter='python'>
+<![CDATA[
+    glimmerhmm_to_sequence.py
+        $glimmerhmm_input
+        $genome_input
+        $output
+        $to_protein
+]]>
+    </command>
+    <inputs>
+        <param name="genome_input" type="data" format="fasta" label="Genome Sequence" />
+        <param name="glimmerhmm_input" type="data" format="gff" label="GlimmerHmm result File" />
+        <param name="to_protein" type="boolean" label="Convert to protein sequence" truevalue="True" falsevalue="False" checked="false" />
+    </inputs>
+    <outputs>
+        <data name="output" format="fasta" />
+    </outputs>
+    <help>
+<![CDATA[
+
+**What it does**
+
+It converts the GlimmerHMM GFF output to a Fasta File.
+
+]]>
+    </help>
+</tool>