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view glimmerHMM/glimmerhmm_to_sequence.xml @ 0:c9699375fcf6 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 0dc67759bcbdf5a8a285ded9ba751340d741fe63
author bgruening
date Wed, 13 Jul 2016 10:55:48 -0400
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children 4da91bb244dc
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<tool id="glimmerhmm_to_sequence" name="GlimmerHMM to Sequence" version="0.1">
    <description>converter</description>
    <command interpreter='python'>
<![CDATA[
    glimmerhmm_to_sequence.py
        $glimmerhmm_input
        $genome_input
        $output
        $to_protein
]]>
    </command>
    <inputs>
        <param name="genome_input" type="data" format="fasta" label="Genome Sequence" />
        <param name="glimmerhmm_input" type="data" format="gff" label="GlimmerHmm result File" />
        <param name="to_protein" type="boolean" label="Convert to protein sequence" truevalue="True" falsevalue="False" checked="false" />
    </inputs>
    <outputs>
        <data name="output" format="fasta" />
    </outputs>
    <help>
<![CDATA[

**What it does**

It converts the GlimmerHMM GFF output to a Fasta File.

]]>
    </help>
</tool>