Mercurial > repos > bgruening > hicexplorer_hicadjustmatrix

diff test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 3:26f73673e261 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
author iuc
date Tue, 24 Mar 2020 13:54:10 -0400
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+++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report	Tue Mar 24 13:54:10 2020 -0400
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+# Created with chicQualityControl version 3.4.3
+# QC report for matrices: 0_matrix.cool 1_matrix.cool 
+#Sparsity threshold for rejection: sparsity <= 0.05 are rejected.
+
+Number of reference points: 43
+Number of accepted reference points: 35
+Number of rejected reference points: 8
+Number of faulty reference points: 0
+
+
+A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices.
+It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends.
+Please check the results of hicInfo to validate this for your data.