Mercurial > repos > bgruening > hicexplorer_hicadjustmatrix
view test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 6:a7fd644deda6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 2a0943e78bdc8ebb13f181399206a9eea37ed78f"
author | iuc |
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date | Tue, 16 Mar 2021 15:30:48 +0000 |
parents | 26f73673e261 |
children | 2dccb6bb0add |
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# Created with chicQualityControl version 3.6 # QC report for matrices: 0_matrix.cool 1_matrix.cool #Sparsity threshold for rejection: sparsity <= 0.05 are rejected. Number of reference points: 43 Number of accepted reference points: 35 Number of rejected reference points: 8 Number of faulty reference points: 0 A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices. It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends. Please check the results of hicInfo to validate this for your data.