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view test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 8:2dccb6bb0add draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
author iuc
date Wed, 18 Oct 2023 10:42:59 +0000
parents a7fd644deda6
children e06265d204f6
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# Created with chicQualityControl version 3.7.2
# QC report for matrices: 0_matrix.cool 1_matrix.cool 
#Sparsity threshold for rejection: sparsity <= 0.05 are rejected.

Number of reference points: 43
Number of accepted reference points: 35
Number of rejected reference points: 8
Number of faulty reference points: 0


A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices.
It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends.
Please check the results of hicInfo to validate this for your data.