Mercurial > repos > bgruening > hicexplorer_hicbuildmatrixmicroc
annotate test-data/raw_qc_report_micro-c @ 0:0c22e9361298 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
author | bgruening |
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date | Thu, 05 Dec 2024 21:42:17 +0000 |
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0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
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1 |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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2 File matrix.cool |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
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3 Sequenced reads 983 |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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4 Max library insert size 1000 |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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5 |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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6 # count (percentage w.r.t. total sequenced reads) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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7 Pairs mappable, unique and high quality 300 (30.52) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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8 Hi-C contacts 215 (21.87) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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9 One mate unmapped 506 (51.48) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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10 One mate not unique 13 (1.32) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
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11 Low mapping quality 164 (16.68) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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12 |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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13 # count (percentage w.r.t. mappable, unique and high quality pairs) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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14 same fragment 85 (28.33) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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15 duplicated pairs 0 (0.00) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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16 |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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17 # count (percentage w.r.t. total valid pairs used) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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18 inter chromosomal 24 (11.16) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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19 Intra short range (< 20kb) 61 (28.37) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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20 Intra long range (>= 20kb) 130 (60.47) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
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21 Read pair type: inward pairs 42 (19.53) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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22 Read pair type: outward pairs 66 (30.70) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
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23 Read pair type: left pairs 48 (22.33) |
0c22e9361298
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
bgruening
parents:
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changeset
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24 Read pair type: right pairs 35 (16.28) |