Mercurial > repos > bgruening > hicexplorer_hicinterintratad

annotate test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 1:c261b6b05ee3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
author iuc
date Mon, 01 Jul 2024 20:06:25 +0000
parents 55b013e59018
children 908fa330b93b
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c261b6b05ee3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
iuc
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1 # Created with chicQualityControl version 3.7.5
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55b013e59018 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
bgruening
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2 # QC report for matrices: 0_matrix.cool 1_matrix.cool
55b013e59018 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
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3 #Sparsity threshold for rejection: sparsity <= 0.05 are rejected.
55b013e59018 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
bgruening
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55b013e59018 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
bgruening
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5 Number of reference points: 43
55b013e59018 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
bgruening
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6 Number of accepted reference points: 35
55b013e59018 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
bgruening
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7 Number of rejected reference points: 8
55b013e59018 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
bgruening
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8 Number of faulty reference points: 0
55b013e59018 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
bgruening
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55b013e59018 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
bgruening
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55b013e59018 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
bgruening
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11 A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices.
55b013e59018 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
bgruening
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12 It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends.
55b013e59018 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
bgruening
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13 Please check the results of hicInfo to validate this for your data.