view test-data/cHi-C/chicQualityControl/new_referencepoints.bed_raw_filter @ 17:03dd3c16ae4e draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 2a0943e78bdc8ebb13f181399206a9eea37ed78f"
author iuc
date Tue, 16 Mar 2021 15:09:57 +0000
parents d5e27e6cfa59
children
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# Created with chicQualityControl version 3.6
# A sparsity of -1.0 indicates a faulty reference point e.g. no data for this reference point was in the matrix.
# Used Matrices 0_matrix.cool	1_matrix.cool	
# Chromosome	Start	End	Sparsity 0_matrix.cool	Sparsity 1_matrix.cool
chr1	4487435	4487435	Sox17	0.14485514485514486	0.16083916083916083
chr1	14300280	14300280	Eya1	0.14285714285714285	0.1938061938061938
chr1	19093103	19093103	Tfap2d	0.1048951048951049	0.16683316683316685
chr1	19198995	19198995	Tfap2b	0.01898101898101898	0.016983016983016984
chr1	24202042	24202042	Col9a1	0.10589410589410589	0.12787212787212787
chr1	33776741	33776741	Rab23	0.15484515484515485	0.2137862137862138
chr1	38684089	38684089	Aff3	0.11588411588411589	0.11388611388611389
chr1	42753991	42753991	Pou3f3	0.04995004995004995	0.07592407592407592
chr1	52176282	52176282	Stat1	0.19080919080919082	0.22777222777222778
chr1	52557292	52557292	Nab1	0.02197802197802198	0.024975024975024976
chr1	53118507	53118507	Mstn	0.3116883116883117	0.37462537462537465
chr1	57028178	57028178	Satb2	0.12287712287712288	0.14385614385614387
chr1	59821123	59821123	Bmpr2	0.14085914085914086	0.16983016983016982
chr1	66991630	66991630	Myl1	0.0919080919080919	0.09290709290709291
chr1	74648029	74648029	Stk36	0.2777222777222777	0.3356643356643357
chr1	74818466	74818466	Wnt6	0.29270729270729273	0.34165834165834164
chr1	74838593	74838593	Wnt10a	0.00999000999000999	0.008991008991008992
chr1	74998246	74998246	Ihh	0.008991008991008992	0.003996003996003996
chr1	75356867	75356867	Des	0.18081918081918083	0.21678321678321677
chr1	77511663	77511663	Epha4	0.15684315684315683	0.22277722277722278
chr1	78193711	78193711	Pax3	0.24375624375624375	0.3096903096903097
chr1	89102386	89102386	Chrng	0.16783216783216784	0.2217782217782218
chr1	93355905	93355905	Per2	0.15384615384615385	0.16483516483516483
chr1	93698054	93698054	Twist2	0.22277722277722278	0.23476523476523475
chr1	94076918	94076918	Hdac4	0.0	0.0
chr1	107677300	107677300	Tnfrsf11a	0.14685314685314685	0.16383616383616384
chr1	120950196	120950196	Gli2	0.13986013986013987	0.2007992007992008
chr1	122499064	122499064	En1	0.1008991008991009	0.11988011988011989
chr1	127808791	127808791	Lypd1	0.18681318681318682	0.22977022977022976
chr1	135934092	135934092	Fmod	0.3516483516483517	0.4145854145854146
chr1	136186581	136186581	MyoG	0.07392607392607392	0.09090909090909091
chr1	152313295	152313295	Prg4	0.00999000999000999	0.006993006993006993
chr1	164004278	164006270	mm712	0.26173826173826176	0.2867132867132867
chr1	164147754	164147754	Dnm3os	0.24875124875124874	0.24675324675324675
chr1	165243781	165243781	Prrx1	0.36063936063936064	0.34065934065934067
chr1	165333772	165333772	Gorab	0.36863136863136864	0.3956043956043956
chr1	169619689	169619689	Lmx1a	0.11888111888111888	0.16783216783216784
chr1	170362300	170362300	Pbx1	0.003996003996003996	0.002997002997002997
chr1	180249284	180249284	Gm16586	0.0	0.0
chr1	182823250	182823250	Lefty2	0.27472527472527475	0.33266733266733267
chr1	182865170	182865170	Lefty1	0.25674325674325676	0.3086913086913087
chr1	188529871	188529871	Tgfb2	0.13486513486513488	0.16583416583416583
chr1	194979306	194979306	Irf6	0.12987012987012986	0.15284715284715283