diff hicSumMatrices.xml @ 19:5aa5ef83f975 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 2a0943e78bdc8ebb13f181399206a9eea37ed78f"

--- a/hicSumMatrices.xml	Fri Dec 11 21:32:29 2020 +0000
+++ b/hicSumMatrices.xml	Tue Mar 16 15:39:40 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="hicexplorer_hicsummatrices" name="@BINARY@" version="@WRAPPER_VERSION@.0">
+<tool id="hicexplorer_hicsummatrices" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>combine Hi-C matrices of the same size</description>
     <macros>
         <token name="@BINARY@">hicSumMatrices</token>
@@ -20,32 +20,31 @@
 ]]>
     </command>
     <inputs>
-        <expand macro='matrix_h5_cooler_multiple_macro'/>
+        <expand macro='matrix_h5_cooler_multiple_macro' />
     </inputs>
     <outputs>
-        <data name="outFileName" from_work_dir="matrix" format_source='matrix_h5_cooler_multiple'/>
+        <data name="outFileName" from_work_dir="matrix" format_source='matrix_h5_cooler_multiple' />
     </outputs>
     <tests>
         <test>
-            <param name="matrix_h5_cooler_multiple" value="small_test_matrix.h5,small_test_matrix.h5"/>
-
+            <param name="matrix_h5_cooler_multiple" value="small_test_matrix.h5,small_test_matrix.h5" />
             <output name="outFileName" ftype="h5">
                 <assert_contents>
-                    <has_h5_keys keys='intervals,matrix'/>
+                    <has_h5_keys keys='intervals,matrix' />
                 </assert_contents>
             </output>
         </test>
-         <test>
-            <param name="matrix_h5_cooler_multiple" value="small_test_matrix.cool,small_test_matrix.cool"/>
-
+        <test>
+            <param name="matrix_h5_cooler_multiple" value="small_test_matrix.cool,small_test_matrix.cool" />
             <output name="outFileName" ftype="cool">
                 <assert_contents>
-                    <has_h5_keys keys='bins,chroms,indexes,pixels'/>
+                    <has_h5_keys keys='bins,chroms,indexes,pixels' />
                 </assert_contents>
             </output>
         </test>
     </tests>
     <help><![CDATA[
+
 Summation of matrices
 =====================
 
@@ -74,6 +73,6 @@
 | For more information about HiCExplorer please consider our documentation on readthedocs.io_
 
 .. _readthedocs.io: http://hicexplorer.readthedocs.io/en/latest/index.html
-]]></help>
+]]>    </help>
     <expand macro="citations" />
 </tool>