Mercurial > repos > bgruening > infernal

diff test-data/cmalign_result_mrum-tRNAs10.out @ 5:6e18e0b098cd draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86
author bgruening
date Sat, 21 Jan 2017 17:36:57 -0500
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cmalign_result_mrum-tRNAs10.out	Sat Jan 21 17:36:57 2017 -0500
@@ -0,0 +1,26 @@
+# STOCKHOLM 1.0
+#=GF AU Infernal 1.1
+
+mrum-tRNA.1          GGAGCUAUAGCUCAAU..GGC..AGAGCGUUUGGCUGACAU........................................CCAAAAGGUUAUGGGUUCGAUUCCCUUUAGCCCCA
+#=GR mrum-tRNA.1  PP ****************..***..******************........................................***********************************
+mrum-tRNA.2          GGGCCCGUAGCUCAGU.uGGG..AGAGCGCUGCCCUUGCAA........................................GGCAGAGGCCCCGGGUUCAAAUCCCGGUGGGUCCA
+#=GR mrum-tRNA.2  PP ****************.****..******************........................................***********************************
+mrum-tRNA.3          GGGCCCAUAGCUUAGCcaGGU..AGAGCGCUCGGCUCAUAA........................................CCGGGAUGUCAUGGGUUCGAAUCCCAUUGGGCCCA
+#=GR mrum-tRNA.3  PP *********************..******************........................................***********************************
+mrum-tRNA.4          AGGCUAGUGGCACAGCcuGGU.cAGCGCGCACGGCUGAUAA........................................CCGUGAGGUCCUGGGUUCGAAUCCCAGCUAGCCUA
+#=GR mrum-tRNA.4  PP ***************999***.*******************........................................***********************************
+mrum-tRNA.5          CCCGACUUAGCUCAAUuuGGC..AGAGCGUUGGACUGUAGA........................................UCCAAAUGUUGCUGGUUCAAGUCCGGCAGUCGGGA
+#=GR mrum-tRNA.5  PP *********************..******************........................................***********************************
+mrum-tRNA.6          GCUUCUAUGGGGUAAU.cGGC.aAACCCAUCGGACUUUCGA........................................UCCGAUAA-UCCGGGUUCAAAUCCCGGUAGAAGCA
+#=GR mrum-tRNA.6  PP ****************.****.*******************........................................********.9*************************
+mrum-tRNA.7          GCUCCGAUGGUGUAGUccGGCcaAUCAUUUCGGCCUUUCGA........................................GCCGAAGA-CUCGGGUUCGAAUCCCGGUCGGAGCA
+#=GR mrum-tRNA.7  PP ********************9999*****************........................................********.**************************
+mrum-tRNA.8          GCGGUGUUAGUCCAGCcuGGU.uAAGACUCUAGCCUGCCAC........................................GUUAGAGA-CCCGGGUUCAAAUCCCGGACGCCGCA
+#=GR mrum-tRNA.8  PP ***************999***.*******************........................................********.**************************
+mrum-tRNA.9          GCCGGGGUGGCUCAGC.uGGU.uAGAGCGCACGGCUC----auaggguaacuaagcgugcucugacuuuuuuccugggauaCCGUGAGAUCGCGGGUUCGAAUCCCGCCCCCGGCA
+#=GR mrum-tRNA.9  PP ****************.****.************995....678************************************************************************
+mrum-tRNA.10         GGUUCUAUAGUUUAAC.aGGU..AAAACAACUGGCUGUUAA........................................CCGGCAGA-UAGGAGUUCGAAUCUUCUUAGAACCG
+#=GR mrum-tRNA.10 PP ****************.****..******************........................................********.9*************************
+#=GC SS_cons         (((((((,,<<<<___..___.._>>>>,<<<<<_______~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~>>>>>,,,,,<<<<<_______>>>>>))))))):
+#=GC RF              gCcggcAUAGcgcAgU..GGu..AgcgCgccagccUgucAa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gcuggAGgUCCgggGUUCGAUUCcccGUgccgGca
+//