Mercurial > repos > bgruening > interproscan
comparison interproscan.xml @ 12:74810db257cc draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interproscan commit 01e8e726d711c0685f46d3146e4fe0f2a1306036
| author | iuc |
|---|---|
| date | Wed, 07 Dec 2022 13:41:49 +0000 |
| parents | 98cafcbd2578 |
| children |
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| 11:98cafcbd2578 | 12:74810db257cc |
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| 2 <description>functional annotation</description> | 2 <description>functional annotation</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <xrefs> | 6 <xrefs> |
| 7 <xref type="bio.tools">interproscan_4</xref> | 7 <xref type="bio.tools">interproscan_ebi</xref> |
| 8 </xrefs> | 8 </xrefs> |
| 9 <requirements> | 9 <requirements> |
| 10 <requirement type="package" version="@TOOL_VERSION@">interproscan</requirement> | 10 <requirement type="package" version="@TOOL_VERSION@">interproscan</requirement> |
| 11 </requirements> | 11 </requirements> |
| 12 <version_command>interproscan.sh --version</version_command> | 12 <version_command>interproscan.sh --version</version_command> |
| 62 </options> | 62 </options> |
| 63 </param> | 63 </param> |
| 64 | 64 |
| 65 <param name="applications" type="select" multiple="True" label="Applications to run" help="Select your program"> | 65 <param name="applications" type="select" multiple="True" label="Applications to run" help="Select your program"> |
| 66 <option value="TIGRFAM" selected="true">TIGRFAM: protein families based on hidden Markov models (HMMs)</option> | 66 <option value="TIGRFAM" selected="true">TIGRFAM: protein families based on hidden Markov models (HMMs)</option> |
| 67 <option value="FunFam" selected="true">FunFam: Prediction of functional annotations for novel, uncharacterized sequences.</option> | |
| 67 <option value="SFLD" selected="true">SFLD: a database of protein families based on hidden Markov models (HMMs)</option> | 68 <option value="SFLD" selected="true">SFLD: a database of protein families based on hidden Markov models (HMMs)</option> |
| 68 <option value="SUPERFAMILY" selected="true">SUPERFAMILY: database of structural and functional annotation for all proteins and genomes</option> | 69 <option value="SUPERFAMILY" selected="true">SUPERFAMILY: database of structural and functional annotation for all proteins and genomes</option> |
| 69 <option value="PANTHER" selected="true">PANTHER: Protein ANalysis THrough Evolutionary Relationships</option> | 70 <option value="PANTHER" selected="true">PANTHER: Protein ANalysis THrough Evolutionary Relationships</option> |
| 70 <option value="Gene3D" selected="true">Gene3d: Structural assignment for whole genes and genomes using the CATH domain structure database</option> | 71 <option value="Gene3D" selected="true">Gene3d: Structural assignment for whole genes and genomes using the CATH domain structure database</option> |
| 71 <option value="Hamap" selected="true">HAMAP: High-quality Automated Annotation of Microbial Proteomes</option> | 72 <option value="Hamap" selected="true">HAMAP: High-quality Automated Annotation of Microbial Proteomes</option> |