Mercurial > repos > bgruening > nanopolish_polya
diff test-data/t2-variants.vcf @ 0:7739a9b0dd83 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish commit 89078a214cefd31d28da75ddebb21f546fba79df-dirty
| author | bgruening |
|---|---|
| date | Wed, 19 Jun 2019 07:00:20 -0400 |
| parents | |
| children | be717b65851f |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/t2-variants.vcf Wed Jun 19 07:00:20 2019 -0400 @@ -0,0 +1,11 @@ +##fileformat=VCFv4.2 +##nanopolish_window=tig00000001:198000-202000 +##INFO=<ID=TotalReads,Number=1,Type=Integer,Description="The number of event-space reads used to call the variant"> +##INFO=<ID=SupportFraction,Number=1,Type=Float,Description="The fraction of event-space reads that support the variant"> +##INFO=<ID=BaseCalledReadsWithVariant,Number=1,Type=Integer,Description="The number of base-space reads that support the variant"> +##INFO=<ID=BaseCalledFraction,Number=1,Type=Float,Description="The fraction of base-space reads that support the variant"> +##INFO=<ID=AlleleCount,Number=1,Type=Integer,Description="The inferred number of copies of the allele"> +##INFO=<ID=SupportFractionByBase,Number=4,Type=Integer,Description="The fraction of reads supporting A,C,G,T at this position"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample +tig00000001 198435 . G A 22.3 PASS BaseCalledReadsWithVariant=10;BaseCalledFraction=0.238095;TotalReads=42;AlleleCount=1;SupportFraction=0.388965;SupportFractionByBase=0.210,0.030,0.718,0.041 GT 0/1