annotate test-data/test_4.json @ 1:891283e0ee89 draft default tip

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit dddf99b20ed9b07334505917f362785e3dace3b9"

[
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        },
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      }
    ],
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      {
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      {
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      {
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      {
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      {
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      {
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      {
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      {
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      },
      {
        "gene": "CYP2C9",
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      },
      {
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      },
      {
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      {
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      },
      {
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      },
      {
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      },
      {
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      },
      {
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        "warnings": []
      },
      {
        "gene": "CYP2C9",
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        "call": null,
        "alleles": [
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        ],
        "phased": false,
        "wildtypeAllele": "AT",
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        "warnings": []
      },
      {
        "gene": "CYP2C9",
        "chromosome": "chr10",
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        "call": null,
        "alleles": [
          "*81"
        ],
        "phased": false,
        "wildtypeAllele": "A",
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        "warnings": []
      },
      {
        "gene": "CYP2C9",
        "chromosome": "chr10",
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        "alleles": [
          "*79"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "CYP2C9",
        "chromosome": "chr10",
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        "alleles": [
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        ],
        "phased": false,
        "wildtypeAllele": "A",
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        "warnings": []
      },
      {
        "gene": "CYP2C9",
        "chromosome": "chr10",
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        "call": null,
        "alleles": [
          "*84"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      }
    ],
    "variantsOfInterest": [
      {
        "gene": "CYP2C9",
        "chromosome": "chr10",
        "position": 94645745,
        "dbSnpId": "rs12777823",
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        "alleles": [],
        "phased": false,
        "wildtypeAllele": null,
        "mismatch": false,
        "warnings": []
      }
    ],
    "highlightedVariants": []
  },
  {
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    "messages": [
      {
        "rule_name": "CYP3A5 reverse complement footnote",
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          "variant": "",
          "dips": [],
          "drugs": []
        },
        "exception_type": "footnote",
        "message": "The CYP3A5 gene is on the negative chromosomal strand, all genotype calls for CYP3A5 in this report refer to the positive chromosomal strand.  Therefore, genotype calls are complemented from gene bases."
      }
    ],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
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        },
        "allele2": {
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        },
        "gene": "CYP3A5",
        "phenotypes": [
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        ],
        "variant": null,
        "lookupKey": [
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      }
    ],
    "diplotypes": [
      {
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        },
        "allele2": {
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        },
        "gene": "CYP3A5",
        "phenotypes": [
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        ],
        "variant": null,
        "lookupKey": [
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        ],
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      }
    ],
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      {
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        "wildtypeAllele": "T",
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      },
      {
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        ],
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        "warnings": []
      },
      {
        "gene": "CYP3A5",
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        "warnings": []
      },
      {
        "gene": "CYP3A5",
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        "warnings": []
      },
      {
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        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  },
  {
    "geneSymbol": "CYP4F2",
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    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
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          "reference": true
        },
        "allele2": {
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          "reference": true
        },
        "gene": "CYP4F2",
        "phenotypes": [],
        "variant": null,
        "lookupKey": [],
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      }
    ],
    "diplotypes": [
      {
        "allele1": {
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          "function": null,
          "reference": true
        },
        "allele2": {
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          "function": null,
          "reference": true
        },
        "gene": "CYP4F2",
        "phenotypes": [],
        "variant": null,
        "lookupKey": [],
        "label": "*1/*1"
      }
    ],
    "variants": [
      {
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        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "CYP4F2",
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        "position": 15897578,
        "dbSnpId": "rs3093105",
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        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  },
  {
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    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [
      {
        "rule_name": "DPYD reverse complement footnote",
        "version": "1",
        "matches": {
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          "hapsCalled": [],
          "hapsMissing": [],
          "variantsMissing": [],
          "variant": "",
          "dips": [],
          "drugs": []
        },
        "exception_type": "footnote",
        "message": "The DPYD gene is on the negative chromosomal strand, all genotype calls for DPYD in this report refer to the positive chromosomal strand.  Therefore, genotype calls are complemented from gene bases."
      }
    ],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
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        },
        "allele2": {
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        },
        "gene": "DPYD",
        "phenotypes": [
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        "lookupKey": [
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        "label": "Reference/Reference"
      }
    ],
    "diplotypes": [
      {
        "allele1": {
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        },
        "allele2": {
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        },
        "gene": "DPYD",
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        "label": "Reference/Reference"
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    ],
    "variants": [
      {
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        "alleles": [
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        "phased": false,
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      },
      {
        "gene": "DPYD",
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      },
      {
        "gene": "DPYD",
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        "warnings": []
      },
      {
        "gene": "DPYD",
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        "warnings": []
      },
      {
        "gene": "DPYD",
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        "warnings": []
      },
      {
        "gene": "DPYD",
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        "warnings": []
      },
      {
        "gene": "DPYD",
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        "wildtypeAllele": "T",
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        "warnings": []
      },
      {
        "gene": "DPYD",
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      },
      {
        "gene": "DPYD",
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        "phased": false,
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      },
      {
        "gene": "DPYD",
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        "phased": false,
        "wildtypeAllele": "T",
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        "warnings": []
      },
      {
        "gene": "DPYD",
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        "phased": false,
        "wildtypeAllele": "T",
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      },
      {
        "gene": "DPYD",
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        "phased": false,
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      },
      {
        "gene": "DPYD",
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        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97699533,
        "dbSnpId": "rs139834141",
        "call": "C|C",
        "alleles": [
          "c.498G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97699535,
        "dbSnpId": "rs2297595",
        "call": "T|T",
        "alleles": [
          "c.496A\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97721542,
        "dbSnpId": "rs200562975",
        "call": "T|T",
        "alleles": [
          "c.451A\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97721650,
        "dbSnpId": "rs141462178",
        "call": "T|T",
        "alleles": [
          "c.343A\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97740400,
        "dbSnpId": "rs150385342",
        "call": "C|C",
        "alleles": [
          "c.313G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97740410,
        "dbSnpId": "rs72549309",
        "call": "GATGA|GATGA",
        "alleles": [
          "c.295_298delTCAT (*7)"
        ],
        "phased": false,
        "wildtypeAllele": "GATGA",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97883329,
        "dbSnpId": "rs1801265",
        "call": "A|A",
        "alleles": [
          "c.85T\u003eC (*9A)"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97883352,
        "dbSnpId": "rs80081766",
        "call": "C|C",
        "alleles": [
          "c.62G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97883353,
        "dbSnpId": "rs72549310",
        "call": "G|G",
        "alleles": [
          "c.61C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "DPYD",
        "chromosome": "chr1",
        "position": 97883368,
        "dbSnpId": "rs150036960",
        "call": "G|G",
        "alleles": [
          "c.46C\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  },
  {
    "geneSymbol": "IFNL3",
    "chr": "chr19",
    "phased": true,
    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [
      {
        "rule_name": "IFNL3 reverse complement footnote",
        "version": "1",
        "matches": {
          "gene": "IFNL3",
          "hapsCalled": [],
          "hapsMissing": [],
          "variantsMissing": [],
          "variant": "",
          "dips": [],
          "drugs": []
        },
        "exception_type": "footnote",
        "message": "The IFNL3 gene is on the negative chromosomal strand, all genotype calls for IFNL3 in this report refer to the positive chromosomal strand.  Therefore, genotype calls are complemented from gene bases."
      }
    ],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
        "allele1": {
          "gene": "IFNL3",
          "name": "rs12979860 reference (C)",
          "function": null,
          "reference": true
        },
        "allele2": {
          "gene": "IFNL3",
          "name": "rs12979860 reference (C)",
          "function": null,
          "reference": true
        },
        "gene": "IFNL3",
        "phenotypes": [],
        "variant": null,
        "lookupKey": [],
        "label": "rs12979860 reference (C)/rs12979860 reference (C)"
      }
    ],
    "diplotypes": [
      {
        "allele1": {
          "gene": "IFNL3",
          "name": "rs12979860 reference (C)",
          "function": null,
          "reference": true
        },
        "allele2": {
          "gene": "IFNL3",
          "name": "rs12979860 reference (C)",
          "function": null,
          "reference": true
        },
        "gene": "IFNL3",
        "phenotypes": [],
        "variant": null,
        "lookupKey": [],
        "label": "rs12979860 reference (C)/rs12979860 reference (C)"
      }
    ],
    "variants": [
      {
        "gene": "IFNL3",
        "chromosome": "chr19",
        "position": 39248147,
        "dbSnpId": "rs12979860",
        "call": "C|C",
        "alleles": [
          "rs12979860 variant (T)"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  },
  {
    "geneSymbol": "NUDT15",
    "chr": "chr13",
    "phased": true,
    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
        "allele1": {
          "gene": "NUDT15",
          "name": "*1",
          "function": "Normal Function",
          "reference": true
        },
        "allele2": {
          "gene": "NUDT15",
          "name": "*1",
          "function": "Normal Function",
          "reference": true
        },
        "gene": "NUDT15",
        "phenotypes": [
          "Normal Metabolizer"
        ],
        "variant": null,
        "lookupKey": [
          "Normal Metabolizer"
        ],
        "label": "*1/*1"
      }
    ],
    "diplotypes": [
      {
        "allele1": {
          "gene": "NUDT15",
          "name": "*1",
          "function": "Normal Function",
          "reference": true
        },
        "allele2": {
          "gene": "NUDT15",
          "name": "*1",
          "function": "Normal Function",
          "reference": true
        },
        "gene": "NUDT15",
        "phenotypes": [
          "Normal Metabolizer"
        ],
        "variant": null,
        "lookupKey": [
          "Normal Metabolizer"
        ],
        "label": "*1/*1"
      }
    ],
    "variants": [
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037748,
        "dbSnpId": "rs769369441",
        "call": "T|T",
        "alleles": [
          "*10"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037749,
        "dbSnpId": null,
        "call": "G|G",
        "alleles": [
          "*19"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037782,
        "dbSnpId": "rs746071566",
        "call": "AGGAGTC|AGGAGTC",
        "alleles": [
          "*2",
          "*6",
          "*9"
        ],
        "phased": false,
        "wildtypeAllele": "AGGAGTC",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037798,
        "dbSnpId": "rs186364861",
        "call": "G|G",
        "alleles": [
          "*5"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037825,
        "dbSnpId": "rs777311140",
        "call": "C|C",
        "alleles": [
          "*14"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037834,
        "dbSnpId": "rs1202487323",
        "call": "C|C",
        "alleles": [
          "*16"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037847,
        "dbSnpId": "rs766023281",
        "call": "G|G",
        "alleles": [
          "*7"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037849,
        "dbSnpId": null,
        "call": "A|A",
        "alleles": [
          "*8"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037885,
        "dbSnpId": "rs1950545307",
        "call": "G|G",
        "alleles": [
          "*11"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48037902,
        "dbSnpId": "rs149436418",
        "call": "C|C",
        "alleles": [
          "*12"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48040977,
        "dbSnpId": "rs1457579126",
        "call": "GA|GA",
        "alleles": [
          "*18"
        ],
        "phased": false,
        "wildtypeAllele": "GA",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48041103,
        "dbSnpId": "rs761191455",
        "call": "T|T",
        "alleles": [
          "*13"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48041113,
        "dbSnpId": "rs1368252918",
        "call": "G|G",
        "alleles": [
          "*17"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48045690,
        "dbSnpId": "rs768324690",
        "call": "C|C",
        "alleles": [
          "*20"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48045719,
        "dbSnpId": "rs116855232",
        "call": "C|C",
        "alleles": [
          "*2",
          "*3"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48045720,
        "dbSnpId": "rs147390019",
        "call": "G|G",
        "alleles": [
          "*4"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "NUDT15",
        "chromosome": "chr13",
        "position": 48045771,
        "dbSnpId": "rs139551410",
        "call": "T|T",
        "alleles": [
          "*15"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  },
  {
    "geneSymbol": "RYR1",
    "chr": "chr19",
    "phased": true,
    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
        "allele1": {
          "gene": "RYR1",
          "name": "Reference",
          "function": "Normal function",
          "reference": true
        },
        "allele2": {
          "gene": "RYR1",
          "name": "Reference",
          "function": "Normal function",
          "reference": true
        },
        "gene": "RYR1",
        "phenotypes": [
          "Uncertain Susceptibility"
        ],
        "variant": null,
        "lookupKey": [
          "Uncertain Susceptibility"
        ],
        "label": "Reference/Reference"
      }
    ],
    "diplotypes": [
      {
        "allele1": {
          "gene": "RYR1",
          "name": "Reference",
          "function": "Normal function",
          "reference": true
        },
        "allele2": {
          "gene": "RYR1",
          "name": "Reference",
          "function": "Normal function",
          "reference": true
        },
        "gene": "RYR1",
        "phenotypes": [
          "Uncertain Susceptibility"
        ],
        "variant": null,
        "lookupKey": [
          "Uncertain Susceptibility"
        ],
        "label": "Reference/Reference"
      }
    ],
    "variants": [
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38440802,
        "dbSnpId": "rs193922747",
        "call": "T|T",
        "alleles": [
          "c.103T\u003eC"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38440829,
        "dbSnpId": "rs193922748",
        "call": "C|C",
        "alleles": [
          "c.130C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38444211,
        "dbSnpId": "rs118192161",
        "call": "C|C",
        "alleles": [
          "c.487C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38444212,
        "dbSnpId": "rs193922753",
        "call": "G|G",
        "alleles": [
          "c.488G\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38446710,
        "dbSnpId": "rs1801086",
        "call": "G|G",
        "alleles": [
          "c.742G\u003eA",
          "c.742G\u003eC"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38448673,
        "dbSnpId": "rs193922762",
        "call": "C|C",
        "alleles": [
          "c.982C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38448712,
        "dbSnpId": "rs121918592",
        "call": "G|G",
        "alleles": [
          "c.1021G\u003eA",
          "c.1021G\u003eC"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38451842,
        "dbSnpId": "rs193922764",
        "call": "C|C",
        "alleles": [
          "c.1201C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38451850,
        "dbSnpId": "rs118192116",
        "call": "C|C",
        "alleles": [
          "c.1209C\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38455359,
        "dbSnpId": "rs118192162",
        "call": "A|A",
        "alleles": [
          "c.1565A\u003eC"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38455463,
        "dbSnpId": "rs111888148",
        "call": "G|G",
        "alleles": [
          "c.1589G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38455471,
        "dbSnpId": "rs193922768",
        "call": "C|C",
        "alleles": [
          "c.1597C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38455472,
        "dbSnpId": "rs144336148",
        "call": "G|G",
        "alleles": [
          "c.1598G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38455528,
        "dbSnpId": "rs193922770",
        "call": "C|C",
        "alleles": [
          "c.1654C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38457545,
        "dbSnpId": "rs118192172",
        "call": "C|C",
        "alleles": [
          "c.1840C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38457546,
        "dbSnpId": "rs193922772",
        "call": "G|G",
        "alleles": [
          "c.1841G\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38494564,
        "dbSnpId": "rs118192175",
        "call": "C|C",
        "alleles": [
          "c.6487C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38494565,
        "dbSnpId": "rs118192163",
        "call": "G|G",
        "alleles": [
          "c.6488G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38494579,
        "dbSnpId": "rs118192176",
        "call": "G|G",
        "alleles": [
          "c.6502G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38496283,
        "dbSnpId": "rs118192177",
        "call": "C|C",
        "alleles": [
          "c.6617C\u003eG",
          "c.6617C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38499223,
        "dbSnpId": "rs112563513",
        "call": "G|G",
        "alleles": [
          "c.7007G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38499644,
        "dbSnpId": "rs121918596",
        "call": "TGGA|TGGA",
        "alleles": [
          "c.7042_7044delGAG"
        ],
        "phased": false,
        "wildtypeAllele": "TGGA",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38499655,
        "dbSnpId": "rs193922802",
        "call": "G|G",
        "alleles": [
          "c.7048G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38499670,
        "dbSnpId": "rs193922803",
        "call": "C|C",
        "alleles": [
          "c.7063C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38499731,
        "dbSnpId": "rs193922807",
        "call": "G|G",
        "alleles": [
          "c.7124G\u003eC"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38499975,
        "dbSnpId": "rs193922809",
        "call": "G|G",
        "alleles": [
          "c.7282G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38499993,
        "dbSnpId": "rs121918593",
        "call": "G|G",
        "alleles": [
          "c.7300G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38499997,
        "dbSnpId": "rs28933396",
        "call": "G|G",
        "alleles": [
          "c.7304G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38500636,
        "dbSnpId": "rs118192124",
        "call": "C|C",
        "alleles": [
          "c.7354C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38500642,
        "dbSnpId": "rs193922816",
        "call": "C|C",
        "alleles": [
          "c.7360C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38500643,
        "dbSnpId": "rs118192122",
        "call": "G|G",
        "alleles": [
          "c.7361G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38500654,
        "dbSnpId": "rs28933397",
        "call": "C|C",
        "alleles": [
          "c.7372C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38500655,
        "dbSnpId": "rs121918594",
        "call": "G|G",
        "alleles": [
          "c.7373G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38500898,
        "dbSnpId": "rs118192178",
        "call": "C|C",
        "alleles": [
          "c.7522C\u003eG",
          "c.7522C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38500899,
        "dbSnpId": "rs193922818",
        "call": "G|G",
        "alleles": [
          "c.7523G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38512321,
        "dbSnpId": "rs193922832",
        "call": "G|G",
        "alleles": [
          "c.9310G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38543832,
        "dbSnpId": "rs193922843",
        "call": "G|G",
        "alleles": [
          "c.11969G\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38580004,
        "dbSnpId": "rs118192167",
        "call": "A|A",
        "alleles": [
          "c.14387A\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38580094,
        "dbSnpId": "rs121918595",
        "call": "C|C",
        "alleles": [
          "c.14477C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38580114,
        "dbSnpId": "rs193922876",
        "call": "C|C",
        "alleles": [
          "c.14497C\u003eT"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38580370,
        "dbSnpId": "rs193922878",
        "call": "C|C",
        "alleles": [
          "c.14512C\u003eG"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38580403,
        "dbSnpId": "rs118192168",
        "call": "G|G",
        "alleles": [
          "c.14545G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38580440,
        "dbSnpId": "rs63749869",
        "call": "G|G",
        "alleles": [
          "c.14582G\u003eA"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "RYR1",
        "chromosome": "chr19",
        "position": 38584989,
        "dbSnpId": "rs118192170",
        "call": "T|T",
        "alleles": [
          "c.14693T\u003eC"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  },
  {
    "geneSymbol": "SLCO1B1",
    "chr": "chr12",
    "phased": true,
    "callSource": "MATCHER",
    "uncalledHaplotypes": [
      "*38",
      "*41",
      "*45"
    ],
    "messages": [],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
        "allele1": {
          "gene": "SLCO1B1",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "allele2": {
          "gene": "SLCO1B1",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "gene": "SLCO1B1",
        "phenotypes": [
          "Normal Function"
        ],
        "variant": null,
        "lookupKey": [
          "Normal Function"
        ],
        "label": "*1/*1"
      }
    ],
    "diplotypes": [
      {
        "allele1": {
          "gene": "SLCO1B1",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "allele2": {
          "gene": "SLCO1B1",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "gene": "SLCO1B1",
        "phenotypes": [
          "Normal Function"
        ],
        "variant": null,
        "lookupKey": [
          "Normal Function"
        ],
        "label": "*1/*1"
      }
    ],
    "variants": [
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21172734,
        "dbSnpId": "rs139257324",
        "call": "C|C",
        "alleles": [
          "*33"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21172776,
        "dbSnpId": "rs373327528",
        "call": "G|G",
        "alleles": [
          "*23"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21172782,
        "dbSnpId": "rs56101265",
        "call": "T|T",
        "alleles": [
          "*2",
          "*12"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21174595,
        "dbSnpId": "rs56061388",
        "call": "T|T",
        "alleles": [
          "*3",
          "*13"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21176804,
        "dbSnpId": "rs2306283",
        "call": "A|A",
        "alleles": [
          "*14",
          "*15",
          "*20",
          "*24",
          "*25",
          "*27",
          "*28",
          "*29",
          "*30",
          "*31",
          "*32",
          "*33",
          "*37",
          "*39",
          "*42",
          "*43",
          "*44",
          "*46",
          "*47"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21176868,
        "dbSnpId": "rs2306282",
        "call": "A|A",
        "alleles": [
          "*16"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21176879,
        "dbSnpId": "rs11045819",
        "call": "C|C",
        "alleles": [
          "*4",
          "*14",
          "*25",
          "*32",
          "*43"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21176883,
        "dbSnpId": "rs72559745",
        "call": "A|A",
        "alleles": [
          "*3",
          "*13"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21178615,
        "dbSnpId": "rs4149056",
        "call": "T|T",
        "alleles": [
          "*5",
          "*15",
          "*40",
          "*46",
          "*47"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21178957,
        "dbSnpId": "rs79135870",
        "call": "A|A",
        "alleles": [
          "*30"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21196951,
        "dbSnpId": "rs11045852",
        "call": "A|A",
        "alleles": [
          "*24",
          "*25",
          "*28",
          "*32",
          "*33",
          "*43",
          "*44"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21196976,
        "dbSnpId": "rs11045853",
        "call": "G|G",
        "alleles": [
          "*25",
          "*28",
          "*33"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21200595,
        "dbSnpId": "rs55901008",
        "call": "T|T",
        "alleles": [
          "*6"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21202553,
        "dbSnpId": "rs1228465562",
        "call": "T|T",
        "alleles": [
          "*36"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21202555,
        "dbSnpId": "rs59113707",
        "call": "C|C",
        "alleles": [
          "*27"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21202649,
        "dbSnpId": "rs56387224",
        "call": "A|A",
        "alleles": [
          "*7"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21202664,
        "dbSnpId": "rs142965323",
        "call": "G|G",
        "alleles": [
          "*26"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21205921,
        "dbSnpId": "rs72559748",
        "call": "A|A",
        "alleles": [
          "*8"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21205999,
        "dbSnpId": "rs59502379",
        "call": "G|G",
        "alleles": [
          "*9",
          "*31"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21239042,
        "dbSnpId": "rs34671512",
        "call": "A|A",
        "alleles": [
          "*19",
          "*20",
          "*40"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21239077,
        "dbSnpId": "rs56199088",
        "call": "A|A",
        "alleles": [
          "*10",
          "*12"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21239113,
        "dbSnpId": "rs55737008",
        "call": "A|A",
        "alleles": [
          "*11",
          "*13"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21239145,
        "dbSnpId": "rs200995543",
        "call": "C|C",
        "alleles": [
          "*34"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21239158,
        "dbSnpId": "rs140790673",
        "call": "C|C",
        "alleles": [
          "*29"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21176871,
        "dbSnpId": null,
        "call": null,
        "alleles": [
          "*38"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21176898,
        "dbSnpId": "rs77271279",
        "call": null,
        "alleles": [
          "*41"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21178612,
        "dbSnpId": "rs141467543",
        "call": null,
        "alleles": [
          "*42"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21196975,
        "dbSnpId": "rs183501729",
        "call": null,
        "alleles": [
          "*39"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21200544,
        "dbSnpId": "rs72559747",
        "call": null,
        "alleles": [
          "*47"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21206031,
        "dbSnpId": "rs74064213",
        "call": null,
        "alleles": [
          "*43",
          "*44"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "SLCO1B1",
        "chromosome": "chr12",
        "position": 21222355,
        "dbSnpId": "rs71581941",
        "call": null,
        "alleles": [
          "*45",
          "*46"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": [
      "rs4149056T/rs4149056T"
    ]
  },
  {
    "geneSymbol": "TPMT",
    "chr": "chr6",
    "phased": true,
    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [
      {
        "rule_name": "TPMT reverse complement footnote",
        "version": "1",
        "matches": {
          "gene": "TPMT",
          "hapsCalled": [],
          "hapsMissing": [],
          "variantsMissing": [],
          "variant": "",
          "dips": [],
          "drugs": []
        },
        "exception_type": "footnote",
        "message": "The TPMT gene is on the negative chromosomal strand, all genotype calls for TPMT in this report refer to the positive chromosomal strand.  Therefore, genotype calls are complemented from gene bases."
      }
    ],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
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          "reference": true
        },
        "allele2": {
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          "reference": true
        },
        "gene": "TPMT",
        "phenotypes": [
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        ],
        "variant": null,
        "lookupKey": [
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        "label": "*1/*1"
      }
    ],
    "diplotypes": [
      {
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        },
        "allele2": {
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          "reference": true
        },
        "gene": "TPMT",
        "phenotypes": [
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        ],
        "variant": null,
        "lookupKey": [
          "Normal Metabolizer"
        ],
        "label": "*1/*1"
      }
    ],
    "variants": [
      {
        "gene": "TPMT",
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        ],
        "phased": false,
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        "warnings": []
      },
      {
        "gene": "TPMT",
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        "dbSnpId": "rs150900439",
        "call": "T|T",
        "alleles": [
          "*20"
        ],
        "phased": false,
        "wildtypeAllele": "T",
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        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18130725,
        "dbSnpId": "rs72552736",
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        "alleles": [
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        ],
        "phased": false,
        "wildtypeAllele": "A",
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        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
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        "dbSnpId": "rs139392616",
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        "alleles": [
          "*40"
        ],
        "phased": false,
        "wildtypeAllele": "C",
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        "warnings": []
      },
      {
        "gene": "TPMT",
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        "dbSnpId": "rs398122996",
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        "warnings": []
      },
      {
        "gene": "TPMT",
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        "dbSnpId": "rs56161402",
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        ],
        "phased": false,
        "wildtypeAllele": "C",
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        "warnings": []
      },
      {
        "gene": "TPMT",
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        "position": 18130772,
        "dbSnpId": "rs377085266",
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        ],
        "phased": false,
        "wildtypeAllele": "A",
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        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
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        "dbSnpId": "rs1800584",
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          "*4"
        ],
        "phased": false,
        "wildtypeAllele": "C",
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        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18132136,
        "dbSnpId": "rs72556347",
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        "alleles": [
          "*26"
        ],
        "phased": false,
        "wildtypeAllele": "A",
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        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18132147,
        "dbSnpId": "rs79901429",
        "call": "A|A",
        "alleles": [
          "*31"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18132163,
        "dbSnpId": null,
        "call": "C|C",
        "alleles": [
          "*36"
        ],
        "phased": false,
        "wildtypeAllele": "C",
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        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18133845,
        "dbSnpId": "rs75543815",
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        "alleles": [
          "*6"
        ],
        "phased": false,
        "wildtypeAllele": "T",
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        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
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        "dbSnpId": "rs6921269",
        "call": "C|C",
        "alleles": [
          "*24"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
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        "dbSnpId": "rs772832951",
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        "alleles": [
          "*38"
        ],
        "phased": false,
        "wildtypeAllele": "A",
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        "warnings": []
      },
      {
        "gene": "TPMT",
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        "position": 18133884,
        "dbSnpId": "rs74423290",
        "call": "G|G",
        "alleles": [
          "*23"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
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        "position": 18133887,
        "dbSnpId": "rs201695576",
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        "alleles": [
          "*44"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
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        "position": 18133890,
        "dbSnpId": "rs9333570",
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          "*15"
        ],
        "phased": false,
        "wildtypeAllele": "C",
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        "warnings": []
      },
      {
        "gene": "TPMT",
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        "dbSnpId": "rs144041067",
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        ],
        "phased": false,
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        "warnings": []
      },
      {
        "gene": "TPMT",
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        "dbSnpId": "rs112339338",
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          "*33"
        ],
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        "warnings": []
      },
      {
        "gene": "TPMT",
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        "dbSnpId": "rs1800460",
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          "*3B"
        ],
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        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
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        "dbSnpId": "rs72552737",
        "call": "C|C",
        "alleles": [
          "*10"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
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        "dbSnpId": "rs72552738",
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        "alleles": [
          "*11"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18139710,
        "dbSnpId": "rs200220210",
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          "*12"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18143597,
        "dbSnpId": null,
        "call": "T|T",
        "alleles": [
          "*19"
        ],
        "phased": false,
        "wildtypeAllele": "T",
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        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18143606,
        "dbSnpId": "rs151149760",
        "call": "T|T",
        "alleles": [
          "*9"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
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        "call": "C|C",
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          "*28"
        ],
        "phased": false,
        "wildtypeAllele": "C",
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        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
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        "dbSnpId": "rs115106679",
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        "alleles": [
          "*32"
        ],
        "phased": false,
        "wildtypeAllele": "C",
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        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18143643,
        "dbSnpId": null,
        "call": "A|A",
        "alleles": [
          "*27"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18143700,
        "dbSnpId": "rs753545734",
        "call": "C|C",
        "alleles": [
          "*43"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18143718,
        "dbSnpId": "rs111901354",
        "call": "G|G",
        "alleles": [
          "*34"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
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        "dbSnpId": "rs1800462",
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        "alleles": [
          "*2"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
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        "position": 18143728,
        "dbSnpId": "rs1256618794",
        "call": "C|C",
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          "*43"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18147838,
        "dbSnpId": "rs281874771",
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          "*39"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18147845,
        "dbSnpId": "rs777686348",
        "call": "C|C",
        "alleles": [
          "*18"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18147851,
        "dbSnpId": "rs200591577",
        "call": "G|G",
        "alleles": [
          "*21"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18147856,
        "dbSnpId": null,
        "call": "A|A",
        "alleles": [
          "*35"
        ],
        "phased": false,
        "wildtypeAllele": "A",
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        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18147910,
        "dbSnpId": "rs72552740",
        "call": "A|A",
        "alleles": [
          "*5"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18149004,
        "dbSnpId": null,
        "call": "G|G",
        "alleles": [
          "*17"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18149022,
        "dbSnpId": "rs750424422",
        "call": "C|C",
        "alleles": [
          "*30"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18149032,
        "dbSnpId": "rs759836180",
        "call": "C|C",
        "alleles": [
          "*42"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18149045,
        "dbSnpId": "rs72552742",
        "call": "T|T",
        "alleles": [
          "*13"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18149126,
        "dbSnpId": "rs267607275",
        "call": "A|A",
        "alleles": [
          "*29"
        ],
        "phased": false,
        "wildtypeAllele": "A",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "TPMT",
        "chromosome": "chr6",
        "position": 18149127,
        "dbSnpId": "rs9333569",
        "call": "T|T",
        "alleles": [
          "*14"
        ],
        "phased": false,
        "wildtypeAllele": "T",
        "mismatch": false,
        "warnings": []
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  },
  {
    "geneSymbol": "UGT1A1",
    "chr": "chr2",
    "phased": true,
    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [
      {
        "rule_name": "UGT1A1 repeat warning",
        "version": "1",
        "matches": {
          "gene": "UGT1A1",
          "hapsCalled": [],
          "hapsMissing": [],
          "variantsMissing": [],
          "variant": "",
          "dips": [],
          "drugs": []
        },
        "exception_type": "footnote",
        "message": "Some alleles in UGT1A1 are distinguished by a repeat sequence; some genotyping technologies may not accurately call the repeat."
      }
    ],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
        "allele1": {
          "gene": "UGT1A1",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "allele2": {
          "gene": "UGT1A1",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "gene": "UGT1A1",
        "phenotypes": [
          "Normal Metabolizer"
        ],
        "variant": null,
        "lookupKey": [
          "Normal Metabolizer"
        ],
        "label": "*1/*1"
      }
    ],
    "diplotypes": [
      {
        "allele1": {
          "gene": "UGT1A1",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "allele2": {
          "gene": "UGT1A1",
          "name": "*1",
          "function": "Normal function",
          "reference": true
        },
        "gene": "UGT1A1",
        "phenotypes": [
          "Normal Metabolizer"
        ],
        "variant": null,
        "lookupKey": [
          "Normal Metabolizer"
        ],
        "label": "*1/*1"
      }
    ],
    "variants": [
      {
        "gene": "UGT1A1",
        "chromosome": "chr2",
        "position": 233759924,
        "dbSnpId": "rs887829",
        "call": "C|C",
        "alleles": [
          "*80",
          "*80+*28",
          "*80+*37"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "UGT1A1",
        "chromosome": "chr2",
        "position": 233760233,
        "dbSnpId": "rs3064744",
        "call": "CAT|CAT",
        "alleles": [
          "*28",
          "*36",
          "*37",
          "*80+*28",
          "*80+*37"
        ],
        "phased": false,
        "wildtypeAllele": "CAT",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "UGT1A1",
        "chromosome": "chr2",
        "position": 233760498,
        "dbSnpId": "rs4148323",
        "call": "G|G",
        "alleles": [
          "*6"
        ],
        "phased": false,
        "wildtypeAllele": "G",
        "mismatch": false,
        "warnings": []
      },
      {
        "gene": "UGT1A1",
        "chromosome": "chr2",
        "position": 233760973,
        "dbSnpId": "rs35350960",
        "call": "C|C",
        "alleles": [
          "*27"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  },
  {
    "geneSymbol": "VKORC1",
    "chr": "chr16",
    "phased": true,
    "callSource": "MATCHER",
    "uncalledHaplotypes": [],
    "messages": [
      {
        "rule_name": "VKORC1",
        "version": "1",
        "matches": {
          "gene": "VKORC1",
          "hapsCalled": [],
          "hapsMissing": [],
          "variantsMissing": [],
          "variant": "",
          "dips": [],
          "drugs": []
        },
        "exception_type": "footnote",
        "message": "CPIC recommendations for warfarin use only rs9923231; however, other variants in VKORC1 may have functional consequences and may be more common in some populations."
      },
      {
        "rule_name": "VKORC1 reverse complement footnote",
        "version": "1",
        "matches": {
          "gene": "VKORC1",
          "hapsCalled": [],
          "hapsMissing": [],
          "variantsMissing": [],
          "variant": "",
          "dips": [],
          "drugs": []
        },
        "exception_type": "footnote",
        "message": "The VKORC1 gene is on the negative chromosomal strand, all genotype calls for VKORC1 in this report refer to the positive chromosomal strand.  Therefore, genotype calls are complemented from gene bases."
      }
    ],
    "relatedDrugs": [],
    "matcherDiplotypes": [
      {
        "allele1": {
          "gene": "VKORC1",
          "name": "rs9923231 reference (C)",
          "function": null,
          "reference": true
        },
        "allele2": {
          "gene": "VKORC1",
          "name": "rs9923231 reference (C)",
          "function": null,
          "reference": true
        },
        "gene": "VKORC1",
        "phenotypes": [],
        "variant": null,
        "lookupKey": [],
        "label": "rs9923231 reference (C)/rs9923231 reference (C)"
      }
    ],
    "diplotypes": [
      {
        "allele1": {
          "gene": "VKORC1",
          "name": "rs9923231 reference (C)",
          "function": null,
          "reference": true
        },
        "allele2": {
          "gene": "VKORC1",
          "name": "rs9923231 reference (C)",
          "function": null,
          "reference": true
        },
        "gene": "VKORC1",
        "phenotypes": [],
        "variant": null,
        "lookupKey": [],
        "label": "rs9923231 reference (C)/rs9923231 reference (C)"
      }
    ],
    "variants": [
      {
        "gene": "VKORC1",
        "chromosome": "chr16",
        "position": 31096368,
        "dbSnpId": "rs9923231",
        "call": "C|C",
        "alleles": [
          "rs9923231 variant (T)"
        ],
        "phased": false,
        "wildtypeAllele": "C",
        "mismatch": false,
        "warnings": []
      }
    ],
    "variantsOfInterest": [],
    "highlightedVariants": []
  }
]