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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
author bgruening
date Fri, 28 Jan 2022 21:18:23 +0000
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d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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1 <!DOCTYPE html>
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2 <html class="no-js" lang="en">
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3 <head>
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4 <meta charset="utf-8" />
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5 <meta http-equiv="x-ua-compatible" content="ie=edge" />
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6 <title>PharmCAT Allele Call Report for input.vcf</title>
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7 <meta name="viewport" content="width=device-width, initial-scale=1" />
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8 <link rel="apple-touch-icon" href="apple-touch-icon.png" />
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10 <link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.6/css/bootstrap.min.css"
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11 integrity="sha384-1q8mTJOASx8j1Au+a5WDVnPi2lkFfwwEAa8hDDdjZlpLegxhjVME1fgjWPGmkzs7" crossorigin="anonymous" />
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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12 <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.3.6/yeti/bootstrap.min.css" />
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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13 <style>
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14 /* Move down content because we have a fixed navbar that is 50px tall */
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15 body {
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16 padding-top: 50px;
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17 padding-bottom: 20px;
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18 }
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19 .browserupgrade {
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20 margin: 0.2em 0;
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21 background: #ccc;
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22 color: #000;
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23 padding: 0.2em 0;
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24 }
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25 td, th {
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26 text-align: center;
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27 }
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28 .footer {
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29 margin-top: 4em;
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30 }
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31 </style>
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32
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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33 <!-- HTML5 shim and Respond.js for IE8 support of HTML5 elements and media queries -->
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34 <!-- WARNING: Respond.js doesn't work if you view the page via file:// -->
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35 <!--[if lt IE 9]>
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36 <script src="https://oss.maxcdn.com/html5shiv/3.7.2/html5shiv.min.js"></script>
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37 <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
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38 <![endif]-->
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39 </head>
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40 <body>
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41 <!--[if lt IE 9]>
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42 <p class="browserupgrade">You are using an <strong>outdated</strong> browser. Please <a href="http://browsehappy.com/">upgrade your browser</a> to improve your experience.</p>
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43 <![endif]-->
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44 <nav class="navbar navbar-default navbar-fixed-top">
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45 <div class="container-fluid">
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46 <div class="navbar-header">
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47 <a class="navbar-brand" href="/">PharmCAT Allele Call Report for input.vcf</a>
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48 </div>
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49 </div>
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50 </nav>
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51
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52 <div class="container-fluid">
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53 <h3>CACNA1S</h3><ul><li>Reference/Reference (4)</li></ul><table class="table table-striped table-hover table-condensed"><tr><th>Definition Position</th><th>201060815</th><th>201091993</th></tr><tr><th></th><th>rs1800559</th><th>rs772226819</th></tr><tr><th>VCF Position</th><th>201060815</th><th>201091993</th></tr><tr><th>VCF REF,ALTs</th><th>C,T</th><th>G,A</th></tr><tr class="success"><th>VCF Call</th><th>C|C</th><th>G|G</th></tr><tr class="info"><th>Reference</th><td><b>C</b></td><td><b>G</b></td></tr><tr><th></th><td>C</td><td>G</td></tr></table><h3>CFTR</h3><ul><li>ivacaftor non-responsive CFTR sequence/ivacaftor non-responsive CFTR sequence (78)</li></ul><table class="table table-striped table-hover table-condensed"><tr><th>Definition Position</th><th>117509035</th><th>117509069</th><th>117509089</th><th>117530953</th><th>117530955</th><th>117530974</th><th>117530975</th><th>117534318</th><th>117534363</th><th>117534368</th><th>117535285</th><th>117540270</th><th>117540285</th><th>117548795</th><th>117587799</th><th>117587800</th><th>117587801</th><th>117587805</th><th>117587806</th><th>117590409</th><th>117594930</th><th>117602868</th><th>117603708</th><th>117606695</th><th>117611555</th><th>117611595</th><th>117611620</th><th>117611640</th><th>117611646</th><th>117611649</th><th>117611650</th><th>117611663</th><th>117614699</th><th>117639961</th><th>117642451</th><th>117642472</th><th>117642483</th><th>117642528</th><th>117664770</th></tr><tr><th></th><th>rs397508256</th><th>rs368505753</th><th>rs115545701</th><th>rs113993958</th><th>rs397508537</th><th>rs77834169</th><th>rs78655421</th><th>rs80282562</th><th>rs397508759</th><th>rs397508761</th><th>rs121908752</th><th>rs77932196</th><th>rs121908753</th><th>rs74551128</th><th>rs121908757</th><th>rs121908755</th><th>rs121909005</th><th>rs121909013</th><th>rs75527207</th><th>rs397508288</th><th>rs397508387</th><th>rs80224560</th><th>rs397508442</th><th>rs141033578</th><th>rs76151804</th><th>rs150212784</th><th>rs397508513</th><th>rs121909020</th><th>rs200321110</th><th>rs202179988</th><th>rs78769542</th><th>rs186045772</th><th>rs75541969</th><th>rs75039782</th><th>rs267606723</th><th>rs74503330</th><th>rs121909041</th><th>rs11971167</th><th>rs193922525</th></tr><tr><th>VCF Position</th><th>117509035</th><th>117509069</th><th>117509089</th><th>117530953</th><th>117530955</th><th>117530974</th><th>117530975</th><th>117534318</th><th>117534363</th><th>117534368</th><th>117535285</th><th>117540270</th><th>117540285</th><th>117548795</th><th>117587799</th><th>117587800</th><th>117587801</th><th>117587805</th><th>117587806</th><th>117590409</th><th>117594930</th><th>117602868</th><th>117603708</th><th>117606695</th><th>117611555</th><th>117611595</th><th>117611620</th><th>117611640</th><th>117611646</th><th>117611649</th><th>117611650</th><th>117611663</th><th>117614699</th><th>117639961</th><th>117642451</th><th>117642472</th><th>117642483</th><th>117642528</th><th>117664770</th></tr><tr><th>VCF REF,ALTs</th><th>G,A</th><th>C,T</th><th>C,T</th><th>G,C</th><th>C,A</th><th>C,T</th><th>G,A</th><th>G,A</th><th>G,A</th><th>A,G</th><th>T,G</th><th>G,A</th><th>G,A</th><th>C,A</th><th>A,C</th><th>G,A</th><th>T,G</th><th>G,A</th><th>G,A</th><th>A,G</th><th>G,T</th><th>G,A</th><th>C,T</th><th>C,T</th><th>A,G</th><th>T,G</th><th>A,C</th><th>G,A</th><th>G,A</th><th>C,T</th><th>G,A</th><th>T,A</th><th>G,C</th><th>C,T</th><th>G,A</th><th>G,A</th><th>T,C</th><th>G,A</th><th>G,A</th></tr><tr class="success"><th>VCF Call</th><th>G|G</th><th>C|C</th><th>C|C</th><th>G|G</th><th>C|C</th><th>C|C</th><th>G|G</th><th>G|G</th><th>G|G</th><th>A|A</th><th>T|T</th><th>G|G</th><th>G|G</th><th>C|C</th><th>A|A</th><th>G|G</th><th>T|T</th><th>G|G</th><th>G|G</th><th>A|A</th><th>G|G</th><th>G|G</th><th>C|C</th><th>C|C</th><th>A|A</th><th>T|T</th><th>A|A</th><th>G|G</th><th>G|G</th><th>C|C</th><th>G|G</th><th>T|T</th><th>G|G</th><th>C|C</th><th>G|G</th><th>G|G</th><th>T|T</th><th>G|G</th><th>G|G</th></tr><tr class="info"><th>ivacaftor non-responsive CFTR sequence</th><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>G</b></td><td><b>G</b></td><td><b>A</b></td><td><b>T</b></td><td><b>G</b></td><td><b>G</b></td><td><b>C</b></td><td><b>A</b></td><td><b>G</b></td><td><b>T</b></td><td><b>G</b></td><td><b>G</b></td><td><b>A</b></td><td><b>G</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>A</b></td><td><b>T</b></td><td><b>A</b></td><td><b>G</b></td><td><b>G</b></td><td><b>C</b></td><td><b>G</b></td><td><b>T</b></td><td><b>G</b></td><td><b>C</b></td><td><b>G</b></td><td><b>G</b></td><td><b>T</b></td><td><b>G</b></td><td><b>G</b></td></tr><tr><th></th><td>G</td><td>C</td><td>C</td><td>G</td><td>C</td><td>C</td><td>G</td><td>G</td><td>G</td><td>A</td><td>T</td><td>G</td><td>G</td><td>C</td><td>A</td><td>G</td><td>T</td><td>G</td><td>G</td><td>A</td><td>G</td><td>G</td><td>C</td><td>C</td><td>A</td><td>T</td><td>A</td><td>G</td><td>G</td><td>C</td><td>G</td><td>T</td><td>G</td><td>C</td><td>G</td><td>G</td><td>T</td><td>G</td><td>G</td></tr></table><h3>CYP2B6</h3><ul><li>*1/*1 (70)</li></ul><table class="table table-striped table-hover table-condensed"><tr><th>Definition Position</th><th>40991224</th><th>40991367</th><th>40991369</th><th>40991381</th><th>40991388</th><th>40991390</th><th>40991391</th><th>40991441</th><th>41004015</th><th>41004125</th><th>41004158</th><th>41004303</th><th>41004377</th><th>41004381</th><th>41004406</th><th>41006919</th><th>41006923</th><th>41006936</th><th>41006968</th><th>41007013</th><th>41009350</th><th>41009358</th><th>41010006</th><th>41010088</th><th>41010108</th><th>41012316</th><th>41012339</th><th>41012465</th><th>41012693</th><th>41012740</th><th>41012803</th><th>41016726</th><th>41016778</th><th>41016805</th><th>41016810</th></tr><tr><th></th><th>rs34223104</th><th>rs34883432</th><th>rs8192709</th><th>rs33973337</th><th>rs33980385</th><th>rs33926104</th><th>rs34284776</th><th>rs35303484</th><th>rs281864907</th><th>rs36060847</th><th>rs186335453</th><th>rs139801276</th><th>rs12721655</th><th>rs35773040</th><th>rs145884402</th><th>rs3826711</th><th>rs36056539</th><th>rs3745274</th><th>rs373489637</th><th>rs36079186</th><th>rs45482602</th><th>rs2279343</th><th>rs139029625</th><th>rs34698757</th><th>rs193922917</th><th>rs28399499</th><th>rs34826503</th><th>rs34097093</th><th>rs35979566</th><th>rs193922918</th><th>rs35010098</th><th>rs3211369</th><th>rs564083989</th><th></th><th>rs3211371</th></tr><tr><th>VCF Position</th><th>40991224</th><th>40991367</th><th>40991369</th><th>40991381</th><th>40991388</th><th>40991390</th><th>40991391</th><th>40991441</th><th>41004015</th><th>41004125</th><th>41004158</th><th>41004303</th><th>41004377</th><th>41004381</th><th>41004406</th><th>41006919</th><th>41006923</th><th>41006936</th><th>41006968</th><th>41007013</th><th>41009350</th><th>41009358</th><th>41010006</th><th>41010088</th><th>41010108</th><th>41012316</th><th>41012339</th><th>41012465</th><th>41012693</th><th>41012740</th><th>41012803</th><th>41016726</th><th>41016778</th><th>41016805</th><th>41016810</th></tr><tr><th>VCF REF,ALTs</th><th>T,C</th><th>A,T</th><th>C,T</th><th>A,T</th><th>A,G</th><th>C,A</th><th>G,C</th><th>A,G</th><th>T,A</th><th>G,A</th><th>G,T</th><th>T,C</th><th>A,G</th><th>G,A</th><th>G,T</th><th>C,G</th><th>C,T</th><th>G,T</th><th>T,G</th><th>T,C</th><th>C,A</th><th>A,G</th><th>G,C</th><th>C,G</th><th>C,A</th><th>T,C</th><th>C,T</th><th>C,T</th><th>T,A</th><th>G,A</th><th>C,A</th><th>A,G</th><th>G,A</th><th>A,T</th><th>C,A,T</th></tr><tr class="success"><th>VCF Call</th><th>T|T</th><th>A|A</th><th>C|C</th><th>A|A</th><th>A|A</th><th>C|C</th><th>G|G</th><th>A|A</th><th>T|T</th><th>G|G</th><th>G|G</th><th>T|T</th><th>A|A</th><th>G|G</th><th>G|G</th><th>C|C</th><th>C|C</th><th>G|G</th><th>T|T</th><th>T|T</th><th>C|C</th><th>A|A</th><th>G|G</th><th>C|C</th><th>C|C</th><th>T|T</th><th>C|C</th><th>C|C</th><th>T|T</th><th>G|G</th><th>C|C</th><th>A|A</th><th>G|G</th><th>A|A</th><th>C|C</th></tr><tr class="info"><th>*1</th><td><b>T</b></td><td><b>A</b></td><td><b>C</b></td><td><b>A</b></td><td><b>A</b></td><td><b>C</b></td><td><b>G</b></td><td><b>A</b></td><td><b>T</b></td><td><b>G</b></td><td><b>G</b></td><td><b>T</b></td><td><b>A</b></td><td><b>G</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>T</b></td><td><b>T</b></td><td><b>C</b></td><td><b>A</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>T</b></td><td><b>C</b></td><td><b>C</b></td><td><b>T</b></td><td><b>G</b></td><td><b>C</b></td><td><b>A</b></td><td><b>G</b></td><td><b>A</b></td><td><b>C</b></td></tr><tr><th></th><td>T</td><td>A</td><td>C</td><td>A</td><td>A</td><td>C</td><td>G</td><td>A</td><td>T</td><td>G</td><td>G</td><td>T</td><td>A</td><td>G</td><td>G</td><td>C</td><td>C</td><td>G</td><td>T</td><td>T</td><td>C</td><td>A</td><td>G</td><td>C</td><td>C</td><td>T</td><td>C</td><td>C</td><td>T</td><td>G</td><td>C</td><td>A</td><td>G</td><td>A</td><td>C</td></tr></table><h3>CYP2C19</h3><ul><li>*38/*38 (68)</li></ul><table class="table table-striped table-hover table-condensed"><tr><th>Definition Position</th><th>94761900</th><th>94762706</th><th>94762712</th><th>94762715</th><th>94762755</th><th>94762760</th><th>94762788</th><th>94762856</th><th>94775106</th><th>94775121</th><th>94775160</th><th>94775185</th><th>94775367</th><th>94775416</th><th>94775423</th><th>94775453</th><th>94775489</th><th>94775507</th><th>94780574</th><th>94780579</th><th>94780653</th><th>94781858</th><th>94781859</th><th>94781944</th><th>94781999</th><th>94842861</th><th>94842866</th><th>94842879</th><th>94842995</th><th>94849995</th><th>94852738</th><th>94852765</th><th>94852785</th><th>94852914</th></tr><tr><th></th><th>rs12248560</th><th>rs28399504</th><th>rs367543002</th><th>rs367543003</th><th>rs55752064</th><th>rs17882687</th><th>rs1564656981</th><th>rs1564657013</th><th>rs145328984</th><th>rs1564660997</th><th>rs118203756</th><th>rs1288601658</th><th>rs12769205</th><th>rs41291556</th><th>rs17885179</th><th>rs72552267</th><th>rs17884712</th><th>rs58973490</th><th>rs140278421</th><th>rs370803989</th><th>rs4986893</th><th>rs6413438</th><th>rs4244285</th><th>rs375781227</th><th>rs72558186</th><th>rs138142612</th><th>rs3758581</th><th>rs118203757</th><th>rs113934938</th><th>rs17879685</th><th>rs56337013</th><th>rs192154563</th><th>rs118203759</th><th>rs55640102</th></tr><tr><th>VCF Position</th><th>94761900</th><th>94762706</th><th>94762712</th><th>94762715</th><th>94762755</th><th>94762760</th><th>94762788</th><th>94762856</th><th>94775106</th><th>94775121</th><th>94775160</th><th>94775185</th><th>94775367</th><th>94775416</th><th>94775423</th><th>94775453</th><th>94775489</th><th>94775507</th><th>94780574</th><th>94780579</th><th>94780653</th><th>94781858</th><th>94781859</th><th>94781944</th><th>94781999</th><th>94842861</th><th>94842866</th><th>94842879</th><th>94842995</th><th>94849995</th><th>94852738</th><th>94852765</th><th>94852785</th><th>94852914</th></tr><tr><th>VCF REF,ALTs</th><th>C,T</th><th>A,G</th><th>C,T</th><th>T,C</th><th>T,C</th><th>A,C</th><th>A,T</th><th>A,G</th><th>C,T</th><th>C,T</th><th>G,C</th><th>A,G</th><th>A,G</th><th>T,C</th><th>A,C</th><th>G,A</th><th>G,A</th><th>G,A</th><th>G,C</th><th>G,A</th><th>G,A</th><th>C,T</th><th>G,A</th><th>G,A</th><th>T,A</th><th>G,A</th><th>A,G</th><th>G,A</th><th>G,A</th><th>C,T</th><th>C,T</th><th>C,T</th><th>C,G</th><th>A,C</th></tr><tr class="success"><th>VCF Call</th><th>C|C</th><th>A|A</th><th>C|C</th><th>T|T</th><th>T|T</th><th>A|A</th><th>A|A</th><th>A|A</th><th>C|C</th><th>C|C</th><th>G|G</th><th>A|A</th><th>A|A</th><th>T|T</th><th>A|A</th><th>G|G</th><th>G|G</th><th>G|G</th><th>G|G</th><th>G|G</th><th>G|G</th><th>C|C</th><th>G|G</th><th>G|G</th><th>T|T</th><th>G|G</th><th>A|A</th><th>G|G</th><th>G|G</th><th>C|C</th><th>C|C</th><th>C|C</th><th>C|C</th><th>A|A</th></tr><tr class="info"><th>*38</th><td><b>C</b></td><td><b>A</b></td><td><b>C</b></td><td><b>T</b></td><td><b>T</b></td><td><b>A</b></td><td><b>A</b></td><td><b>A</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>A</b></td><td><b>A</b></td><td><b>T</b></td><td><b>A</b></td><td><b>G</b></td><td><b>G</b></td><td><b>G</b></td><td><b>G</b></td><td><b>G</b></td><td><b>G</b></td><td><b>C</b></td><td><b>G</b></td><td><b>G</b></td><td><b>T</b></td><td><b>G</b></td><td><b>A</b></td><td><b>G</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>C</b></td><td><b>C</b></td><td><b>A</b></td></tr><tr><th></th><td>C</td><td>A</td><td>C</td><td>T</td><td>T</td><td>A</td><td>A</td><td>A</td><td>C</td><td>C</td><td>G</td><td>A</td><td>A</td><td>T</td><td>A</td><td>G</td><td>G</td><td>G</td><td>G</td><td>G</td><td>G</td><td>C</td><td>G</td><td>G</td><td>T</td><td>G</td><td>A</td><td>G</td><td>G</td><td>C</td><td>C</td><td>C</td><td>C</td><td>A</td></tr></table><h3>CYP2C9</h3><ul><li>*1/*1 (132)</li></ul><table class="table table-striped table-hover table-condensed"><tr><th>Definition Position</th><th>94938683</th><th>94938737</th><th>94938771</th><th>94938803</th><th>94938828</th><th>94941897</th><th>94941915</th><th>94941958</th><th>94941976</th><th>94941982</th><th>94942018</th><th>94942205</th><th>94942216</th><th>94942230</th><th>94942231</th><th>94942233</th><th>94942234</th><th>94942249</th><th>94942254</th><th>94942255</th><th>94942290</th><th>94942291</th><th>94942305</th><th>94942309</th><th>94947782</th><th>94947785</th><th>94947869</th><th>94947907</th><th>94947917</th><th>94947938</th><th>94949129</th><th>94949144</th><th>94949217</th><th>94949280</th><th>94949281</th><th>94972119</th><th>94972123</th><th>94972134</th><th>94972179</th><th>94972180</th><th>94972233</th><th>94981199</th><th>94981201</th><th>94981224</th><th>94981225</th><th>94981230</th><th>94981250</th><th>94981281</th><th>94981296</th><th>94981297</th><th>94981301</th><th>94981302</th><th>94981305</th><th>94981365</th><th>94981371</th><th>94986042</th><th>94986073</th><th>94988852</th><th>94988855</th><th>94988880</th><th>94988917</th><th>94988925</th><th>94988955</th><th>94988984</th><th>94989020</th><th>94989023</th></tr><tr><th></th><th>rs114071557</th><th>rs67807361</th><th>rs142240658</th><th>rs2031308986</th><th>rs564813580</th><th>rs371055887</th><th></th><th>rs72558187</th><th></th><th>rs762239445</th><th></th><th>rs1304490498</th><th>rs774607211</th><th>rs767576260</th><th>rs12414460</th><th>rs375805362</th><th>rs72558189</th><th>rs200965026</th><th>rs199523631</th><th>rs200183364</th><th>rs1799853</th><th>rs141489852</th><th>rs754487195</th><th>rs7900194</th><th>rs72558190</th><th>rs774550549</th><th></th><th></th><th>rs1326630788</th><th>rs2031531005</th><th></th><th></th><th>rs2256871</th><th>rs9332130</th><th>rs9332131</th><th>rs182132442</th><th></th><th></th><th>rs72558192</th><th>rs988617574</th><th>rs1237225311</th><th></th><th>rs57505750</th><th>rs28371685</th><th>rs367826293</th><th>rs1274535931</th><th>rs750820937</th><th>rs749060448</th><th>rs1057910</th><th>rs56165452</th><th>rs28371686</th><th>rs1250577724</th><th>rs578144976</th><th></th><th>rs542577750</th><th>rs764211126</th><th>rs72558193</th><th>rs776908257</th><th></th><th></th><th>rs769942899</th><th>rs202201137</th><th>rs767284820</th><th>rs781583846</th><th>rs9332239</th><th>rs868182778</th></tr><tr><th>VCF Position</th><th>94938683</th><th>94938737</th><th>94938771</th><th>94938803</th><th>94938828</th><th>94941897</th><th>94941915</th><th>94941958</th><th>94941976</th><th>94941982</th><th>94942018</th><th>94942205</th><th>94942216</th><th>94942230</th><th>94942231</th><th>94942233</th><th>94942234</th><th>94942249</th><th>94942254</th><th>94942255</th><th>94942290</th><th>94942291</th><th>94942305</th><th>94942309</th><th>94947782</th><th>94947785</th><th>94947869</th><th>94947907</th><th>94947917</th><th>94947938</th><th>94949129</th><th>94949144</th><th>94949217</th><th>94949280</th><th>94949281</th><th>94972119</th><th>94972123</th><th>94972134</th><th>94972179</th><th>94972180</th><th>94972233</th><th>94981199</th><th>94981201</th><th>94981224</th><th>94981225</th><th>94981230</th><th>94981250</th><th>94981281</th><th>94981296</th><th>94981297</th><th>94981301</th><th>94981302</th><th>94981305</th><th>94981365</th><th>94981371</th><th>94986042</th><th>94986073</th><th>94988852</th><th>94988855</th><th>94988880</th><th>94988917</th><th>94988925</th><th>94988955</th><th>94988984</th><th>94989020</th><th>94989023</th></tr><tr><th>VCF REF,ALTs</th><th>A,G</th><th>C,A</th><th>C,T</th><th>A,G</th><th>A,G</th><th>G,C</th><th>G,A</th><th>T,C</th><th>G,C</th><th>G,T</th><th>T,C</th><th>CAATGGAAAGA,C</th><th>A,G</th><th>C,T</th><th>G,A</th><th>C,T</th><th>G,A,T</th><th>C,G,T</th><th>C,T</th><th>G,A</th><th>C,T</th><th>G,A</th><th>G,A</th><th>G,A,T</th><th>C,A</th><th>C,T</th><th>A,G</th><th>A,C</th><th>T,C</th><th>A,T</th><th>A,G</th><th>C,T</th><th>A,G</th><th>A,G</th><th>GA,G</th><th>C,A</th><th>C,G</th><th>A,G</th><th>A,G</th><th>C,G</th><th>C,T</th><th>G,T</th><th>T,C</th><th>C,T</th><th>G,A</th><th>C,A</th><th>C,A</th><th>G,A</th><th>A,C</th><th>T,C</th><th>C,G</th><th>C,A</th><th>C,G</th><th>C,T</th><th>G,A</th><th>A,G</th><th>A,C</th><th>C,T</th><th>A,T</th><th>G,T</th><th>G,C</th><th>A,G</th><th>T,C</th><th>G,A</th><th>C,T</th><th>G,T</th></tr><tr class="success"><th>VCF Call</th><th>A|A</th><th>C|C</th><th>C|C</th><th>A|A</th><th>A|A</th><th>G|G</th><th>G|G</th><th>T|T</th><th>G|G</th><th>G|G</th><th>T|T</th><th>CAATGGAAAGA|CAATGGAAAGA</th><th>A|A</th><th>C|C</th><th>G|G</th><th>C|C</th><th>G|G</th><th>C|C</th><th>C|C</th><th>G|G</th><th>C|C</th><th>G|G</th><th>G|G</th><th>G|G</th><th>C|C</th><th>C|C</th><th>A|A</th><th>A|A</th><th>T|T</th><th>A|A</th><th>A|A</th><th>C|C</th><th>A|A</th><th>A|A</th><th>GA|GA</th><th>C|C</th><th>C|C</th><th>A|A</th><th>A|A</th><th>C|C</th><th>C|C</th><th>G|G</th><th>T|T</th><th>C|C</th><th>G|G</th><th>C|C</th><th>C|C</th><th>G|G</th><th>A|A</th><th>T|T</th><th>C|C</th><th>C|C</th><th>C|C</th><th>C|C</th><th>G|G</th><th>A|A</th><th>A|A</th><th>C|C</th><th>A|A</th><th>G|G</th><th>G|G</th><th>A|A</th><th>T|T</th><th>G|G</th><th>C|C</th><th>G|G</th></tr><tr class="info"><th>*1</th><td><b>A</b></td><td><b>C</b></td><td><b>C</b></td><td><b>A</b></td><td><b>A</b></td><td><b>G</b></td><td><b>G</b></td><td><b>T</b></td><td><b>G</b></td><td><b>G</b></td><td><b>T</b></td><td><b>CAATGGAAAGA</b></td><td><b>A</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>G</b></td><td><b>G</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>A</b></td><td><b>A</b></td><td><b>T</b></td><td><b>A</b></td><td><b>A</b></td><td><b>C</b></td><td><b>A</b></td><td><b>A</b></td><td><b>GA</b></td><td><b>C</b></td><td><b>C</b></td><td><b>A</b></td><td><b>A</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>T</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>A</b></td><td><b>T</b></td><td><b>C</b></td><td><b>C</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>A</b></td><td><b>A</b></td><td><b>C</b></td><td><b>A</b></td><td><b>G</b></td><td><b>G</b></td><td><b>A</b></td><td><b>T</b></td><td><b>G</b></td><td><b>C</b></td><td><b>G</b></td></tr><tr><th></th><td>A</td><td>C</td><td>C</td><td>A</td><td>A</td><td>G</td><td>G</td><td>T</td><td>G</td><td>G</td><td>T</td><td>CAATGGAAAGA</td><td>A</td><td>C</td><td>G</td><td>C</td><td>G</td><td>C</td><td>C</td><td>G</td><td>C</td><td>G</td><td>G</td><td>G</td><td>C</td><td>C</td><td>A</td><td>A</td><td>T</td><td>A</td><td>A</td><td>C</td><td>A</td><td>A</td><td>GA</td><td>C</td><td>C</td><td>A</td><td>A</td><td>C</td><td>C</td><td>G</td><td>T</td><td>C</td><td>G</td><td>C</td><td>C</td><td>G</td><td>A</td><td>T</td><td>C</td><td>C</td><td>C</td><td>C</td><td>G</td><td>A</td><td>A</td><td>C</td><td>A</td><td>G</td><td>G</td><td>A</td><td>T</td><td>G</td><td>C</td><td>G</td></tr></table><p>There were 4 missing positions from the VCF file:</p><ul><li>94942306 (g.94942306C>T)</li><li>94942308 (g.94942308C>T)</li><li>94947439 (g.94947439G>T)</li><li>94986136 (g.94986136A>C)</li></ul><p>The following haplotype(s) were eliminated from consideration:</p><ul><li>*72</li><li>*73</li><li>*74</li><li>*75</li></ul><p>The following haplotypes were called even though tag positions were missing:</p><ul><li>Called *1 without g.94942306C>T, g.94942308C>T, g.94947439G>T, g.94986136A>C</li></ul><h3>CYP3A5</h3><ul><li>*1/*1 (16)</li></ul><table class="table table-striped table-hover table-condensed"><tr><th>Definition Position</th><th>99652613</th><th>99652770</th><th>99660516</th><th>99665212</th><th>99665237</th><th>99666950</th><th>99672916</th><th>99676198</th></tr><tr><th></th><th>rs28365083</th><th>rs41303343</th><th>rs28383479</th><th>rs10264272</th><th>rs56411402</th><th>rs55965422</th><th>rs776746</th><th>rs55817950</th></tr><tr><th>VCF Position</th><th>99652613</th><th>99652770</th><th>99660516</th><th>99665212</th><th>99665237</th><th>99666950</th><th>99672916</th><th>99676198</th></tr><tr><th>VCF REF,ALTs</th><th>G,T</th><th>T,TA</th><th>C,T</th><th>C,T</th><th>T,C</th><th>A,G</th><th>T,C</th><th>G,A</th></tr><tr class="success"><th>VCF Call</th><th>G|G</th><th>T|T</th><th>C|C</th><th>C|C</th><th>T|T</th><th>A|A</th><th>T|T</th><th>G|G</th></tr><tr class="info"><th>*1</th><td><b>G</b></td><td><b>T</b></td><td><b>C</b></td><td><b>C</b></td><td><b>T</b></td><td><b>A</b></td><td><b>T</b></td><td><b>G</b></td></tr><tr><th></th><td>G</td><td>T</td><td>C</td><td>C</td><td>T</td><td>A</td><td>T</td><td>G</td></tr></table><h3>CYP4F2</h3><ul><li>*1/*1 (4)</li></ul><table class="table table-striped table-hover table-condensed"><tr><th>Definition Position</th><th>15879621</th><th>15897578</th></tr><tr><th></th><th>rs2108622</th><th>rs3093105</th></tr><tr><th>VCF Position</th><th>15879621</th><th>15897578</th></tr><tr><th>VCF REF,ALTs</th><th>C,T</th><th>A,C</th></tr><tr class="success"><th>VCF Call</th><th>C|C</th><th>A|A</th></tr><tr class="info"><th>*1</th><td><b>C</b></td><td><b>A</b></td></tr><tr><th></th><td>C</td><td>A</td></tr></table><h3>DPYD</h3><ul><li>Reference/Reference (166)</li></ul><table class="table table-striped table-hover table-condensed"><tr><th>Definition Position</th><th>97078987</th><th>97078993</th><th>97079005</th><th>97079071</th><th>97079076</th><th>97079077</th><th>97079121</th><th>97079133</th><th>97079139</th><th>97082365</th><th>97082391</th><th>97098598</th><th>97098599</th><th>97098616</th><th>97098632</th><th>97193109</th><th>97193209</th><th>97234958</th><th>97234991</th><th>97305279</th><th>97305363</th><th>97305364</th><th>97305372</th><th>97306195</th><th>97373598</th><th>97373629</th><th>97382461</th><th>97450058</th><th>97450059</th><th>97450065</th><th>97450068</th><th>97450168</th><th>97450187</th><th>97450189</th><th>97450190</th><th>97515784</th><th>97515787</th><th>97515839</th><th>97515851</th><th>97515865</th><th>97515889</th><th>97515923</th><th>97549565</th><th>97549600</th><th>97549609</th><th>97549681</th><th>97549713</th><th>97549726</th><th>97549735</th><th>97573785</th><th>97573805</th><th>97573821</th><th>97573839</th><th>97573863</th><th>97573881</th><th>97573918</th><th>97573919</th><th>97573943</th><th>97579893</th><th>97593238</th><th>97593289</th><th>97593322</th><th>97593343</th><th>97593379</th><th>97595083</th><th>97595088</th><th>97595149</th><th>97679170</th><th>97691776</th><th>97699399</th><th>97699430</th><th>97699474</th><th>97699506</th><th>97699533</th><th>97699535</th><th>97721542</th><th>97721650</th><th>97740400</th><th>97740410</th><th>97883329</th><th>97883352</th><th>97883353</th><th>97883368</th></tr><tr><th></th><th>rs114096998</th><th>rs148799944</th><th>rs140114515</th><th>rs1801268</th><th>rs139459586</th><th>rs202144771</th><th>rs72547601</th><th>rs72547602</th><th>rs145529148</th><th>rs141044036</th><th>rs67376798</th><th>rs1801267</th><th>rs147545709</th><th>rs55674432</th><th>rs201035051</th><th>rs60139309</th><th>rs200687447</th><th>rs199634007</th><th>rs56005131</th><th>rs112766203</th><th>rs60511679</th><th>rs1801160</th><th>rs146529561</th><th>rs145548112</th><th>rs137999090</th><th>rs138545885</th><th>rs55971861</th><th>rs3918290</th><th>rs3918289</th><th>rs72549303</th><th>rs17376848</th><th>rs147601618</th><th>rs145773863</th><th>rs138616379</th><th>rs59086055</th><th>rs201615754</th><th>rs55886062</th><th>rs1801159</th><th>rs142619737</th><th>rs1801158</th><th>rs190951787</th><th>rs148994843</th><th>rs138391898</th><th>rs111858276</th><th>rs72549304</th><th>rs199549923</th><th>rs57918000</th><th>rs144395748</th><th>rs72975710</th><th>rs186169810</th><th>rs142512579</th><th>rs764666241</th><th>rs200064537</th><th>rs56038477</th><th>rs61622928</th><th>rs143815742</th><th>rs140602333</th><th>rs78060119</th><th>rs75017182</th><th>rs72549305</th><th>rs143154602</th><th>rs183385770</th><th>rs72549306</th><th>rs201018345</th><th>rs145112791</th><th>rs150437414</th><th>rs146356975</th><th>rs45589337</th><th>rs1801266</th><th>rs72549307</th><th>rs72549308</th><th>rs115232898</th><th>rs6670886</th><th>rs139834141</th><th>rs2297595</th><th>rs200562975</th><th>rs141462178</th><th>rs150385342</th><th>rs72549309</th><th>rs1801265</th><th>rs80081766</th><th>rs72549310</th><th>rs150036960</th></tr><tr><th>VCF Position</th><th>97078987</th><th>97078993</th><th>97079005</th><th>97079071</th><th>97079076</th><th>97079077</th><th>97079121</th><th>97079133</th><th>97079139</th><th>97082365</th><th>97082391</th><th>97098598</th><th>97098599</th><th>97098616</th><th>97098632</th><th>97193109</th><th>97193209</th><th>97234958</th><th>97234991</th><th>97305279</th><th>97305363</th><th>97305364</th><th>97305372</th><th>97306195</th><th>97373598</th><th>97373629</th><th>97382461</th><th>97450058</th><th>97450059</th><th>97450065</th><th>97450068</th><th>97450168</th><th>97450187</th><th>97450189</th><th>97450190</th><th>97515784</th><th>97515787</th><th>97515839</th><th>97515851</th><th>97515865</th><th>97515889</th><th>97515923</th><th>97549565</th><th>97549600</th><th>97549609</th><th>97549681</th><th>97549713</th><th>97549726</th><th>97549735</th><th>97573785</th><th>97573805</th><th>97573821</th><th>97573839</th><th>97573863</th><th>97573881</th><th>97573918</th><th>97573919</th><th>97573943</th><th>97579893</th><th>97593238</th><th>97593289</th><th>97593322</th><th>97593343</th><th>97593379</th><th>97595083</th><th>97595088</th><th>97595149</th><th>97679170</th><th>97691776</th><th>97699399</th><th>97699430</th><th>97699474</th><th>97699506</th><th>97699533</th><th>97699535</th><th>97721542</th><th>97721650</th><th>97740400</th><th>97740410</th><th>97883329</th><th>97883352</th><th>97883353</th><th>97883368</th></tr><tr><th>VCF REF,ALTs</th><th>G,T</th><th>C,G</th><th>C,T</th><th>C,A</th><th>A,C</th><th>G,A</th><th>T,C</th><th>T,A</th><th>T,C</th><th>T,C</th><th>T,A</th><th>C,T</th><th>G,A</th><th>C,A</th><th>T,G</th><th>T,C</th><th>C,T</th><th>G,T</th><th>G,T</th><th>G,A</th><th>A,C</th><th>C,T</th><th>G,A</th><th>C,T</th><th>C,T</th><th>C,A</th><th>T,G</th><th>C,T</th><th>G,C</th><th>TG,T</th><th>A,G</th><th>A,G</th><th>C,T</th><th>C,T</th><th>G,A</th><th>C,A</th><th>A,C</th><th>T,C</th><th>C,T</th><th>C,T</th><th>G,C</th><th>C,T</th><th>C,T</th><th>T,C</th><th>G,A</th><th>G,T</th><th>G,A</th><th>G,C</th><th>G,A</th><th>A,C</th><th>C,T</th><th>C,A</th><th>A,T</th><th>C,T</th><th>C,T</th><th>C,A</th><th>G,A</th><th>C,A</th><th>G,C</th><th>T,C</th><th>G,A</th><th>C,T</th><th>C,A</th><th>C,T</th><th>G,A</th><th>A,G</th><th>T,C</th><th>T,C</th><th>G,A</th><th>T,C</th><th>T,G</th><th>T,C</th><th>C,T</th><th>C,T</th><th>T,C</th><th>T,C</th><th>T,C</th><th>C,T</th><th>GATGA,G</th><th>A,G</th><th>C,T</th><th>G,A</th><th>G,C</th></tr><tr class="success"><th>VCF Call</th><th>G|G</th><th>C|C</th><th>C|C</th><th>C|C</th><th>A|A</th><th>G|G</th><th>T|T</th><th>T|T</th><th>T|T</th><th>T|T</th><th>T|T</th><th>C|C</th><th>G|G</th><th>C|C</th><th>T|T</th><th>T|T</th><th>C|C</th><th>G|G</th><th>G|G</th><th>G|G</th><th>A|A</th><th>C|C</th><th>G|G</th><th>C|C</th><th>C|C</th><th>C|C</th><th>T|T</th><th>C|C</th><th>G|G</th><th>TG|TG</th><th>A|A</th><th>A|A</th><th>C|C</th><th>C|C</th><th>G|G</th><th>C|C</th><th>A|A</th><th>T|T</th><th>C|C</th><th>C|C</th><th>G|G</th><th>C|C</th><th>C|C</th><th>T|T</th><th>G|G</th><th>G|G</th><th>G|G</th><th>G|G</th><th>G|G</th><th>A|A</th><th>C|C</th><th>C|C</th><th>A|A</th><th>C|C</th><th>C|C</th><th>C|C</th><th>G|G</th><th>C|C</th><th>G|G</th><th>T|T</th><th>G|G</th><th>C|C</th><th>C|C</th><th>C|C</th><th>G|G</th><th>A|A</th><th>T|T</th><th>T|T</th><th>G|G</th><th>T|T</th><th>T|T</th><th>T|T</th><th>C|C</th><th>C|C</th><th>T|T</th><th>T|T</th><th>T|T</th><th>C|C</th><th>GATGA|GATGA</th><th>A|A</th><th>C|C</th><th>G|G</th><th>G|G</th></tr><tr class="info"><th>Reference</th><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>C</b></td><td><b>A</b></td><td><b>G</b></td><td><b>T</b></td><td><b>T</b></td><td><b>T</b></td><td><b>T</b></td><td><b>T</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>T</b></td><td><b>T</b></td><td><b>C</b></td><td><b>G</b></td><td><b>G</b></td><td><b>G</b></td><td><b>A</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>C</b></td><td><b>T</b></td><td><b>C</b></td><td><b>G</b></td><td><b>TG</b></td><td><b>A</b></td><td><b>A</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>A</b></td><td><b>T</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>T</b></td><td><b>G</b></td><td><b>G</b></td><td><b>G</b></td><td><b>G</b></td><td><b>G</b></td><td><b>A</b></td><td><b>C</b></td><td><b>C</b></td><td><b>A</b></td><td><b>C</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>G</b></td><td><b>T</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>A</b></td><td><b>T</b></td><td><b>T</b></td><td><b>G</b></td><td><b>T</b></td><td><b>T</b></td><td><b>T</b></td><td><b>C</b></td><td><b>C</b></td><td><b>T</b></td><td><b>T</b></td><td><b>T</b></td><td><b>C</b></td><td><b>GATGA</b></td><td><b>A</b></td><td><b>C</b></td><td><b>G</b></td><td><b>G</b></td></tr><tr><th></th><td>G</td><td>C</td><td>C</td><td>C</td><td>A</td><td>G</td><td>T</td><td>T</td><td>T</td><td>T</td><td>T</td><td>C</td><td>G</td><td>C</td><td>T</td><td>T</td><td>C</td><td>G</td><td>G</td><td>G</td><td>A</td><td>C</td><td>G</td><td>C</td><td>C</td><td>C</td><td>T</td><td>C</td><td>G</td><td>TG</td><td>A</td><td>A</td><td>C</td><td>C</td><td>G</td><td>C</td><td>A</td><td>T</td><td>C</td><td>C</td><td>G</td><td>C</td><td>C</td><td>T</td><td>G</td><td>G</td><td>G</td><td>G</td><td>G</td><td>A</td><td>C</td><td>C</td><td>A</td><td>C</td><td>C</td><td>C</td><td>G</td><td>C</td><td>G</td><td>T</td><td>G</td><td>C</td><td>C</td><td>C</td><td>G</td><td>A</td><td>T</td><td>T</td><td>G</td><td>T</td><td>T</td><td>T</td><td>C</td><td>C</td><td>T</td><td>T</td><td>T</td><td>C</td><td>GATGA</td><td>A</td><td>C</td><td>G</td><td>G</td></tr></table><h3>IFNL3</h3><ul><li>rs12979860 reference (C)/rs12979860 reference (C) (2)</li></ul><table class="table table-striped table-hover table-condensed"><tr><th>Definition Position</th><th>39248147</th></tr><tr><th></th><th>rs12979860</th></tr><tr><th>VCF Position</th><th>39248147</th></tr><tr><th>VCF REF,ALTs</th><th>C,T</th></tr><tr class="success"><th>VCF Call</th><th>C|C</th></tr><tr class="info"><th>rs12979860 reference (C)</th><td><b>C</b></td></tr><tr><th></th><td>C</td></tr></table><h3>NUDT15</h3><ul><li>*1/*1 (34)</li></ul><table class="table table-striped table-hover table-condensed"><tr><th>Definition Position</th><th>48037748</th><th>48037749</th><th>48037782</th><th>48037798</th><th>48037825</th><th>48037834</th><th>48037847</th><th>48037849</th><th>48037885</th><th>48037902</th><th>48040977</th><th>48041103</th><th>48041113</th><th>48045690</th><th>48045719</th><th>48045720</th><th>48045771</th></tr><tr><th></th><th>rs769369441</th><th></th><th>rs746071566</th><th>rs186364861</th><th>rs777311140</th><th>rs1202487323</th><th>rs766023281</th><th></th><th>rs1950545307</th><th>rs149436418</th><th>rs1457579126</th><th>rs761191455</th><th>rs1368252918</th><th>rs768324690</th><th>rs116855232</th><th>rs147390019</th><th>rs139551410</th></tr><tr><th>VCF Position</th><th>48037748</th><th>48037749</th><th>48037782</th><th>48037798</th><th>48037825</th><th>48037834</th><th>48037847</th><th>48037849</th><th>48037885</th><th>48037902</th><th>48040977</th><th>48041103</th><th>48041113</th><th>48045690</th><th>48045719</th><th>48045720</th><th>48045771</th></tr><tr><th>VCF REF,ALTs</th><th>T,C</th><th>G,C</th><th>AGGAGTC,A,AGGAGTCGGAGTC</th><th>G,A</th><th>C,CGCGG</th><th>C,T</th><th>G,C</th><th>A,G</th><th>G,A</th><th>C,G</th><th>GA,G</th><th>T,TG</th><th>G,T</th><th>C,G</th><th>C,T</th><th>G,A</th><th>T,A</th></tr><tr class="success"><th>VCF Call</th><th>T|T</th><th>G|G</th><th>AGGAGTC|AGGAGTC</th><th>G|G</th><th>C|C</th><th>C|C</th><th>G|G</th><th>A|A</th><th>G|G</th><th>C|C</th><th>GA|GA</th><th>T|T</th><th>G|G</th><th>C|C</th><th>C|C</th><th>G|G</th><th>T|T</th></tr><tr class="info"><th>*1</th><td><b>T</b></td><td><b>G</b></td><td><b>AGGAGTC</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>A</b></td><td><b>G</b></td><td><b>C</b></td><td><b>GA</b></td><td><b>T</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>T</b></td></tr><tr><th></th><td>T</td><td>G</td><td>AGGAGTC</td><td>G</td><td>C</td><td>C</td><td>G</td><td>A</td><td>G</td><td>C</td><td>GA</td><td>T</td><td>G</td><td>C</td><td>C</td><td>G</td><td>T</td></tr></table><h3>RYR1</h3><ul><li>Reference/Reference (88)</li></ul><table class="table table-striped table-hover table-condensed"><tr><th>Definition Position</th><th>38440802</th><th>38440829</th><th>38444211</th><th>38444212</th><th>38446710</th><th>38448673</th><th>38448712</th><th>38451842</th><th>38451850</th><th>38455359</th><th>38455463</th><th>38455471</th><th>38455472</th><th>38455528</th><th>38457545</th><th>38457546</th><th>38494564</th><th>38494565</th><th>38494579</th><th>38496283</th><th>38499223</th><th>38499644</th><th>38499655</th><th>38499670</th><th>38499731</th><th>38499975</th><th>38499993</th><th>38499997</th><th>38500636</th><th>38500642</th><th>38500643</th><th>38500654</th><th>38500655</th><th>38500898</th><th>38500899</th><th>38512321</th><th>38543832</th><th>38580004</th><th>38580094</th><th>38580114</th><th>38580370</th><th>38580403</th><th>38580440</th><th>38584989</th></tr><tr><th></th><th>rs193922747</th><th>rs193922748</th><th>rs118192161</th><th>rs193922753</th><th>rs1801086</th><th>rs193922762</th><th>rs121918592</th><th>rs193922764</th><th>rs118192116</th><th>rs118192162</th><th>rs111888148</th><th>rs193922768</th><th>rs144336148</th><th>rs193922770</th><th>rs118192172</th><th>rs193922772</th><th>rs118192175</th><th>rs118192163</th><th>rs118192176</th><th>rs118192177</th><th>rs112563513</th><th>rs121918596</th><th>rs193922802</th><th>rs193922803</th><th>rs193922807</th><th>rs193922809</th><th>rs121918593</th><th>rs28933396</th><th>rs118192124</th><th>rs193922816</th><th>rs118192122</th><th>rs28933397</th><th>rs121918594</th><th>rs118192178</th><th>rs193922818</th><th>rs193922832</th><th>rs193922843</th><th>rs118192167</th><th>rs121918595</th><th>rs193922876</th><th>rs193922878</th><th>rs118192168</th><th>rs63749869</th><th>rs118192170</th></tr><tr><th>VCF Position</th><th>38440802</th><th>38440829</th><th>38444211</th><th>38444212</th><th>38446710</th><th>38448673</th><th>38448712</th><th>38451842</th><th>38451850</th><th>38455359</th><th>38455463</th><th>38455471</th><th>38455472</th><th>38455528</th><th>38457545</th><th>38457546</th><th>38494564</th><th>38494565</th><th>38494579</th><th>38496283</th><th>38499223</th><th>38499644</th><th>38499655</th><th>38499670</th><th>38499731</th><th>38499975</th><th>38499993</th><th>38499997</th><th>38500636</th><th>38500642</th><th>38500643</th><th>38500654</th><th>38500655</th><th>38500898</th><th>38500899</th><th>38512321</th><th>38543832</th><th>38580004</th><th>38580094</th><th>38580114</th><th>38580370</th><th>38580403</th><th>38580440</th><th>38584989</th></tr><tr><th>VCF REF,ALTs</th><th>T,C</th><th>C,T</th><th>C,T</th><th>G,T</th><th>G,A,C</th><th>C,T</th><th>G,A,C</th><th>C,T</th><th>C,G</th><th>A,C</th><th>G,A</th><th>C,T</th><th>G,A</th><th>C,T</th><th>C,T</th><th>G,T</th><th>C,T</th><th>G,A</th><th>G,A</th><th>C,G,T</th><th>G,A</th><th>TGGA,T</th><th>G,A</th><th>C,T</th><th>G,C</th><th>G,A</th><th>G,A</th><th>G,A</th><th>C,T</th><th>C,T</th><th>G,A</th><th>C,T</th><th>G,A</th><th>C,G,T</th><th>G,A</th><th>G,A</th><th>G,T</th><th>A,G</th><th>C,T</th><th>C,T</th><th>C,G</th><th>G,A</th><th>G,A</th><th>T,C</th></tr><tr class="success"><th>VCF Call</th><th>T|T</th><th>C|C</th><th>C|C</th><th>G|G</th><th>G|G</th><th>C|C</th><th>G|G</th><th>C|C</th><th>C|C</th><th>A|A</th><th>G|G</th><th>C|C</th><th>G|G</th><th>C|C</th><th>C|C</th><th>G|G</th><th>C|C</th><th>G|G</th><th>G|G</th><th>C|C</th><th>G|G</th><th>TGGA|TGGA</th><th>G|G</th><th>C|C</th><th>G|G</th><th>G|G</th><th>G|G</th><th>G|G</th><th>C|C</th><th>C|C</th><th>G|G</th><th>C|C</th><th>G|G</th><th>C|C</th><th>G|G</th><th>G|G</th><th>G|G</th><th>A|A</th><th>C|C</th><th>C|C</th><th>C|C</th><th>G|G</th><th>G|G</th><th>T|T</th></tr><tr class="info"><th>Reference</th><td><b>T</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>G</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>A</b></td><td><b>G</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>G</b></td><td><b>G</b></td><td><b>C</b></td><td><b>G</b></td><td><b>TGGA</b></td><td><b>G</b></td><td><b>C</b></td><td><b>G</b></td><td><b>G</b></td><td><b>G</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>G</b></td><td><b>G</b></td><td><b>G</b></td><td><b>A</b></td><td><b>C</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>G</b></td><td><b>T</b></td></tr><tr><th></th><td>T</td><td>C</td><td>C</td><td>G</td><td>G</td><td>C</td><td>G</td><td>C</td><td>C</td><td>A</td><td>G</td><td>C</td><td>G</td><td>C</td><td>C</td><td>G</td><td>C</td><td>G</td><td>G</td><td>C</td><td>G</td><td>TGGA</td><td>G</td><td>C</td><td>G</td><td>G</td><td>G</td><td>G</td><td>C</td><td>C</td><td>G</td><td>C</td><td>G</td><td>C</td><td>G</td><td>G</td><td>G</td><td>A</td><td>C</td><td>C</td><td>C</td><td>G</td><td>G</td><td>T</td></tr></table><h3>SLCO1B1</h3><ul><li>*1/*1 (48)</li></ul><table class="table table-striped table-hover table-condensed"><tr><th>Definition Position</th><th>21172734</th><th>21172776</th><th>21172782</th><th>21174595</th><th>21176804</th><th>21176868</th><th>21176879</th><th>21176883</th><th>21178615</th><th>21178957</th><th>21196951</th><th>21196976</th><th>21200595</th><th>21202553</th><th>21202555</th><th>21202649</th><th>21202664</th><th>21205921</th><th>21205999</th><th>21239042</th><th>21239077</th><th>21239113</th><th>21239145</th><th>21239158</th></tr><tr><th></th><th>rs139257324</th><th>rs373327528</th><th>rs56101265</th><th>rs56061388</th><th>rs2306283</th><th>rs2306282</th><th>rs11045819</th><th>rs72559745</th><th>rs4149056</th><th>rs79135870</th><th>rs11045852</th><th>rs11045853</th><th>rs55901008</th><th>rs1228465562</th><th>rs59113707</th><th>rs56387224</th><th>rs142965323</th><th>rs72559748</th><th>rs59502379</th><th>rs34671512</th><th>rs56199088</th><th>rs55737008</th><th>rs200995543</th><th>rs140790673</th></tr><tr><th>VCF Position</th><th>21172734</th><th>21172776</th><th>21172782</th><th>21174595</th><th>21176804</th><th>21176868</th><th>21176879</th><th>21176883</th><th>21178615</th><th>21178957</th><th>21196951</th><th>21196976</th><th>21200595</th><th>21202553</th><th>21202555</th><th>21202649</th><th>21202664</th><th>21205921</th><th>21205999</th><th>21239042</th><th>21239077</th><th>21239113</th><th>21239145</th><th>21239158</th></tr><tr><th>VCF REF,ALTs</th><th>C,T</th><th>G,A</th><th>T,C</th><th>T,C</th><th>A,G</th><th>A,G</th><th>C,A</th><th>A,G</th><th>T,C</th><th>A,G</th><th>A,G</th><th>G,A</th><th>T,C</th><th>T,G</th><th>C,G</th><th>A,G</th><th>G,A</th><th>A,G</th><th>G,C</th><th>A,C</th><th>A,G</th><th>A,G</th><th>C,T</th><th>C,T</th></tr><tr class="success"><th>VCF Call</th><th>C|C</th><th>G|G</th><th>T|T</th><th>T|T</th><th>A|A</th><th>A|A</th><th>C|C</th><th>A|A</th><th>T|T</th><th>A|A</th><th>A|A</th><th>G|G</th><th>T|T</th><th>T|T</th><th>C|C</th><th>A|A</th><th>G|G</th><th>A|A</th><th>G|G</th><th>A|A</th><th>A|A</th><th>A|A</th><th>C|C</th><th>C|C</th></tr><tr class="info"><th>*1</th><td><b>C</b></td><td><b>G</b></td><td><b>T</b></td><td><b>T</b></td><td><b>A</b></td><td><b>A</b></td><td><b>C</b></td><td><b>A</b></td><td><b>T</b></td><td><b>A</b></td><td><b>A</b></td><td><b>G</b></td><td><b>T</b></td><td><b>T</b></td><td><b>C</b></td><td><b>A</b></td><td><b>G</b></td><td><b>A</b></td><td><b>G</b></td><td><b>A</b></td><td><b>A</b></td><td><b>A</b></td><td><b>C</b></td><td><b>C</b></td></tr><tr><th></th><td>C</td><td>G</td><td>T</td><td>T</td><td>A</td><td>A</td><td>C</td><td>A</td><td>T</td><td>A</td><td>A</td><td>G</td><td>T</td><td>T</td><td>C</td><td>A</td><td>G</td><td>A</td><td>G</td><td>A</td><td>A</td><td>A</td><td>C</td><td>C</td></tr></table><p>There were 7 missing positions from the VCF file:</p><ul><li>21176871 (g.21176871G>A)</li><li>21176898 (g.21176898G>T)</li><li>21178612 (g.21178612A>G)</li><li>21196975 (g.21196975C>T)</li><li>21200544 (g.21200544C>G)</li><li>21206031 (g.21206031A>G)</li><li>21222355 (g.21222355C>T)</li></ul><p>The following haplotype(s) were eliminated from consideration:</p><ul><li>*41</li><li>*45</li><li>*38</li></ul><p>The following haplotypes were called even though tag positions were missing:</p><ul><li>Called *1 without g.21176871G>A, g.21176898G>T, g.21178612A>G, g.21196975C>T, g.21200544C>G, g.21206031A>G, g.21222355C>T</li></ul><h3>TPMT</h3><ul><li>*1/*1 (86)</li></ul><table class="table table-striped table-hover table-condensed"><tr><th>Definition Position</th><th>18130687</th><th>18130694</th><th>18130725</th><th>18130729</th><th>18130758</th><th>18130762</th><th>18130772</th><th>18130781</th><th>18132136</th><th>18132147</th><th>18132163</th><th>18133845</th><th>18133847</th><th>18133870</th><th>18133884</th><th>18133887</th><th>18133890</th><th>18138969</th><th>18138970</th><th>18138997</th><th>18139027</th><th>18139689</th><th>18139710</th><th>18143597</th><th>18143606</th><th>18143613</th><th>18143622</th><th>18143643</th><th>18143700</th><th>18143718</th><th>18143724</th><th>18143728</th><th>18147838</th><th>18147845</th><th>18147851</th><th>18147856</th><th>18147910</th><th>18149004</th><th>18149022</th><th>18149032</th><th>18149045</th><th>18149126</th><th>18149127</th></tr><tr><th></th><th>rs1142345</th><th>rs150900439</th><th>rs72552736</th><th>rs139392616</th><th>rs398122996</th><th>rs56161402</th><th>rs377085266</th><th>rs1800584</th><th>rs72556347</th><th>rs79901429</th><th></th><th>rs75543815</th><th>rs6921269</th><th>rs772832951</th><th>rs74423290</th><th>rs201695576</th><th>rs9333570</th><th>rs144041067</th><th>rs112339338</th><th>rs1800460</th><th>rs72552737</th><th>rs72552738</th><th>rs200220210</th><th></th><th>rs151149760</th><th></th><th>rs115106679</th><th></th><th>rs753545734</th><th>rs111901354</th><th>rs1800462</th><th>rs1256618794</th><th>rs281874771</th><th>rs777686348</th><th>rs200591577</th><th></th><th>rs72552740</th><th></th><th>rs750424422</th><th>rs759836180</th><th>rs72552742</th><th>rs267607275</th><th>rs9333569</th></tr><tr><th>VCF Position</th><th>18130687</th><th>18130694</th><th>18130725</th><th>18130729</th><th>18130758</th><th>18130762</th><th>18130772</th><th>18130781</th><th>18132136</th><th>18132147</th><th>18132163</th><th>18133845</th><th>18133847</th><th>18133870</th><th>18133884</th><th>18133887</th><th>18133890</th><th>18138969</th><th>18138970</th><th>18138997</th><th>18139027</th><th>18139689</th><th>18139710</th><th>18143597</th><th>18143606</th><th>18143613</th><th>18143622</th><th>18143643</th><th>18143700</th><th>18143718</th><th>18143724</th><th>18143728</th><th>18147838</th><th>18147845</th><th>18147851</th><th>18147856</th><th>18147910</th><th>18149004</th><th>18149022</th><th>18149032</th><th>18149045</th><th>18149126</th><th>18149127</th></tr><tr><th>VCF REF,ALTs</th><th>T,C,G</th><th>T,C</th><th>A,C</th><th>C,T</th><th>A,T</th><th>C,T</th><th>A,G</th><th>C,T</th><th>A,G</th><th>A,G</th><th>C,T</th><th>T,A</th><th>C,A</th><th>A,G</th><th>G,C</th><th>T,C</th><th>C,T</th><th>C,G,T</th><th>G,A</th><th>C,T</th><th>C,G</th><th>C,T</th><th>G,A</th><th>T,G</th><th>T,G</th><th>C,G</th><th>C,T</th><th>A,C</th><th>C,T</th><th>G,A</th><th>C,G</th><th>C,A</th><th>G,A</th><th>C,T</th><th>G,C</th><th>A,G</th><th>A,G</th><th>G,C</th><th>C,T</th><th>C,CT</th><th>T,A</th><th>A,G</th><th>T,C</th></tr><tr class="success"><th>VCF Call</th><th>T|T</th><th>T|T</th><th>A|A</th><th>C|C</th><th>A|A</th><th>C|C</th><th>A|A</th><th>C|C</th><th>A|A</th><th>A|A</th><th>C|C</th><th>T|T</th><th>C|C</th><th>A|A</th><th>G|G</th><th>T|T</th><th>C|C</th><th>C|C</th><th>G|G</th><th>C|C</th><th>C|C</th><th>C|C</th><th>G|G</th><th>T|T</th><th>T|T</th><th>C|C</th><th>C|C</th><th>A|A</th><th>C|C</th><th>G|G</th><th>C|C</th><th>C|C</th><th>G|G</th><th>C|C</th><th>G|G</th><th>A|A</th><th>A|A</th><th>G|G</th><th>C|C</th><th>C|C</th><th>T|T</th><th>A|A</th><th>T|T</th></tr><tr class="info"><th>*1</th><td><b>T</b></td><td><b>T</b></td><td><b>A</b></td><td><b>C</b></td><td><b>A</b></td><td><b>C</b></td><td><b>A</b></td><td><b>C</b></td><td><b>A</b></td><td><b>A</b></td><td><b>C</b></td><td><b>T</b></td><td><b>C</b></td><td><b>A</b></td><td><b>G</b></td><td><b>T</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>T</b></td><td><b>T</b></td><td><b>C</b></td><td><b>C</b></td><td><b>A</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>G</b></td><td><b>C</b></td><td><b>G</b></td><td><b>A</b></td><td><b>A</b></td><td><b>G</b></td><td><b>C</b></td><td><b>C</b></td><td><b>T</b></td><td><b>A</b></td><td><b>T</b></td></tr><tr><th></th><td>T</td><td>T</td><td>A</td><td>C</td><td>A</td><td>C</td><td>A</td><td>C</td><td>A</td><td>A</td><td>C</td><td>T</td><td>C</td><td>A</td><td>G</td><td>T</td><td>C</td><td>C</td><td>G</td><td>C</td><td>C</td><td>C</td><td>G</td><td>T</td><td>T</td><td>C</td><td>C</td><td>A</td><td>C</td><td>G</td><td>C</td><td>C</td><td>G</td><td>C</td><td>G</td><td>A</td><td>A</td><td>G</td><td>C</td><td>C</td><td>T</td><td>A</td><td>T</td></tr></table><h3>UGT1A1</h3><ul><li>*1/*1 (8)</li></ul><table class="table table-striped table-hover table-condensed"><tr><th>Definition Position</th><th>233759924</th><th>233760233</th><th>233760498</th><th>233760973</th></tr><tr><th></th><th>rs887829</th><th>rs3064744</th><th>rs4148323</th><th>rs35350960</th></tr><tr><th>VCF Position</th><th>233759924</th><th>233760233</th><th>233760498</th><th>233760973</th></tr><tr><th>VCF REF,ALTs</th><th>C,T</th><th>CAT,C,CATAT,CATATAT</th><th>G,A</th><th>C,A</th></tr><tr class="success"><th>VCF Call</th><th>C|C</th><th>CAT|CAT</th><th>G|G</th><th>C|C</th></tr><tr class="info"><th>*1</th><td><b>C</b></td><td><b>CAT</b></td><td><b>G</b></td><td><b>C</b></td></tr><tr><th></th><td>C</td><td>CAT</td><td>G</td><td>C</td></tr></table><h3>VKORC1</h3><ul><li>rs9923231 reference (C)/rs9923231 reference (C) (2)</li></ul><table class="table table-striped table-hover table-condensed"><tr><th>Definition Position</th><th>31096368</th></tr><tr><th></th><th>rs9923231</th></tr><tr><th>VCF Position</th><th>31096368</th></tr><tr><th>VCF REF,ALTs</th><th>C,T</th></tr><tr class="success"><th>VCF Call</th><th>C|C</th></tr><tr class="info"><th>rs9923231 reference (C)</th><td><b>C</b></td></tr><tr><th></th><td>C</td></tr></table>
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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54 </div>
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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55 <div class="footer">
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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56 <hr />
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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57 <footer class="container-fluid">
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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58 <small>
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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59 <p>Generated on 01/27/22.</p>
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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60 </small>
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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61 </footer>
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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62 </div>
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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64 <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script>
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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65 <script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.6/js/bootstrap.min.js"
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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66 integrity="sha384-0mSbJDEHialfmuBBQP6A4Qrprq5OVfW37PRR3j5ELqxss1yVqOtnepnHVP9aJ7xS" crossorigin="anonymous"></script>
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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67 </body>
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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68 </html>
d67642a21a1d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat commit c6a098eb0cbfa87b0feaebf10ef6b24da659fa54"
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