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comparison sailfish.xml @ 2:20eab032389f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit b9ccc98180d52233931768511b909ccd6142f158
author bgruening
date Mon, 21 Dec 2015 14:00:53 -0500
parents 06646e81c543
children 03c74355227f
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1:06646e81c543 2:20eab032389f
209 <help> 209 <help>
210 <![CDATA[ 210 <![CDATA[
211 **What it does** 211 **What it does**
212 212
213 Sailfish is a tool for transcript quantification from RNA-seq data. It 213 Sailfish is a tool for transcript quantification from RNA-seq data. It
214 requires a set of target transcripts (either from a reference or _de-novo_ 214 requires a set of target transcripts (either from a reference or de-novo
215 assembly) to quantify. All you need to run Sailfish is a fasta file containing 215 assembly) to quantify. All you need to run Sailfish is a fasta file containing
216 your reference transcripts and a (set of) fasta/fastq file(s) containing your 216 your reference transcripts and a (set of) fasta/fastq file(s) containing your
217 reads. Sailfish runs in two phases; indexing and quantification. The indexing 217 reads. Sailfish runs in two phases; indexing and quantification. The indexing
218 step is independent of the reads, and only need to be run one for a particular 218 step is independent of the reads, and only need to be run one for a particular
219 set of reference transcripts and choice of k (the k-mer size). The 219 set of reference transcripts and choice of k (the k-mer size). The