Mercurial > repos > bgruening > sailfish
comparison test-data/sailfish_quant_result1.tab @ 0:3b4ed0e473dc draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit bd2dd2419ea52f30cd7de2f7109a12b49b5d0dba-dirty
| author | bgruening |
|---|---|
| date | Fri, 16 Oct 2015 15:09:03 -0400 |
| parents | |
| children | 1b4ed566a41c |
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| -1:000000000000 | 0:3b4ed0e473dc |
|---|---|
| 1 # sailfish (quasi-mapping-based) v0.7.6 | |
| 2 # [ program ] => sailfish | |
| 3 # [ command ] => quant | |
| 4 # [ index ] => { ./index_dir } | |
| 5 # [ mates1 ] => { ./mate1.fastq } | |
| 6 # [ mates2 ] => { ./mate2.fastq } | |
| 7 # [ libType ] => { IU } | |
| 8 # [ output ] => { ./ } | |
| 9 # [ biasCorrect ] => { } | |
| 10 # [ threads ] => { 1 } | |
| 11 # [ fldMean ] => { 200 } | |
| 12 # [ fldSD ] => { 80 } | |
| 13 # [ maxReadOcc ] => { 200 } | |
| 14 # [ maxFragLen ] => { 1000 } | |
| 15 # [ txpAggregationKey ] => { gene_id } | |
| 16 # [ mapping rate ] => { 100% } | |
| 17 # Name Length TPM NumReads | |
| 18 NM_001168316 2283 12398.5 159.361 | |
| 19 NM_174914 2385 111257 1500.04 | |
| 20 NR_031764 1853 10254.5 104.595 | |
| 21 NM_004503 1681 36198.8 330.806 | |
| 22 NM_006897 1541 80244.3 664 | |
| 23 NM_014212 2037 4852.08 55 | |
| 24 NM_014620 2300 45132.7 584.838 | |
| 25 NM_017409 1959 4330.19 47 | |
| 26 NM_017410 2396 3099.5 42 | |
| 27 NM_018953 1612 26168.3 228 | |
| 28 NM_022658 2288 378838 4881 | |
| 29 NM_153633 1666 40578.4 367.074 | |
| 30 NM_153693 2072 6430.57 74.2815 | |
| 31 NM_173860 849 240218 962 | |
| 32 NR_003084 1640 0 0 |