Mercurial > repos > bgruening > sailfish

diff test-data/sailfish_quant_result1.tab @ 0:3b4ed0e473dc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit bd2dd2419ea52f30cd7de2f7109a12b49b5d0dba-dirty
author bgruening
date Fri, 16 Oct 2015 15:09:03 -0400
parents
children 1b4ed566a41c
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/sailfish_quant_result1.tab	Fri Oct 16 15:09:03 2015 -0400
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+# sailfish (quasi-mapping-based) v0.7.6
+# [ program ] => sailfish 
+# [ command ] => quant 
+# [ index ] => { ./index_dir }
+# [ mates1 ] => { ./mate1.fastq }
+# [ mates2 ] => { ./mate2.fastq }
+# [ libType ] => { IU }
+# [ output ] => { ./ }
+# [ biasCorrect ] => { }
+# [ threads ] => { 1 }
+# [ fldMean ] => { 200 }
+# [ fldSD ] => { 80 }
+# [ maxReadOcc ] => { 200 }
+# [ maxFragLen ] => { 1000 }
+# [ txpAggregationKey ] => { gene_id }
+# [ mapping rate ] => { 100% }
+# Name	Length	TPM	NumReads
+NM_001168316	2283	12398.5	159.361
+NM_174914	2385	111257	1500.04
+NR_031764	1853	10254.5	104.595
+NM_004503	1681	36198.8	330.806
+NM_006897	1541	80244.3	664
+NM_014212	2037	4852.08	55
+NM_014620	2300	45132.7	584.838
+NM_017409	1959	4330.19	47
+NM_017410	2396	3099.5	42
+NM_018953	1612	26168.3	228
+NM_022658	2288	378838	4881
+NM_153633	1666	40578.4	367.074
+NM_153693	2072	6430.57	74.2815
+NM_173860	849	240218	962
+NR_003084	1640	0	0