Mercurial > repos > bgruening > sailfish

diff tool-data/sailfish_indexes.loc.sample @ 0:3b4ed0e473dc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sailfish commit bd2dd2419ea52f30cd7de2f7109a12b49b5d0dba-dirty
author bgruening
date Fri, 16 Oct 2015 15:09:03 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/sailfish_indexes.loc.sample	Fri Oct 16 15:09:03 2015 -0400
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+# This is a sample file distributed with Galaxy that is used to define a
+# list of sailfish indices, using three columns tab separated:
+#
+# sailfish_index_id{tab}Sailfish Index desciption{tab}/data/sailfish_indexes/sailfish_index_id/
+#
+# An index can be created with the following command:
+#
+# sailfish index
+#     --transcripts your_transcripts.fasta
+#     --kmerSize 21
+#     --out /data/sailfish_indexes/sailfish_index_id/
+#     --threads 4
+#
+