Mercurial > repos > bgruening > salmon
annotate test-data/cached_locally/prebuilt_index/quasi_index.log @ 10:4de6e2e40c7a draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 8f432498890670fd03a197bd3d1aa2638d1ff2b3"
author | bgruening |
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date | Mon, 09 Sep 2019 11:11:22 -0400 |
parents | 2c0ca397d302 |
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rev | line source |
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10
4de6e2e40c7a
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 8f432498890670fd03a197bd3d1aa2638d1ff2b3"
bgruening
parents:
9
diff
changeset
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1 [2019-09-08 20:35:10.409] [jointLog] [info] [Step 1 of 4] : counting k-mers |
4de6e2e40c7a
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 8f432498890670fd03a197bd3d1aa2638d1ff2b3"
bgruening
parents:
9
diff
changeset
|
2 [2019-09-08 20:35:10.412] [jointLog] [info] Replaced 0 non-ATCG nucleotides |
4de6e2e40c7a
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 8f432498890670fd03a197bd3d1aa2638d1ff2b3"
bgruening
parents:
9
diff
changeset
|
3 [2019-09-08 20:35:10.412] [jointLog] [info] Clipped poly-A tails from 0 transcripts |
4de6e2e40c7a
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 8f432498890670fd03a197bd3d1aa2638d1ff2b3"
bgruening
parents:
9
diff
changeset
|
4 [2019-09-08 20:35:10.412] [jointLog] [info] Building rank-select dictionary and saving to disk |
4de6e2e40c7a
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 8f432498890670fd03a197bd3d1aa2638d1ff2b3"
bgruening
parents:
9
diff
changeset
|
5 [2019-09-08 20:35:10.412] [jointLog] [info] done |
4de6e2e40c7a
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 8f432498890670fd03a197bd3d1aa2638d1ff2b3"
bgruening
parents:
9
diff
changeset
|
6 [2019-09-08 20:35:10.412] [jointLog] [info] Writing sequence data to file . . . |
4de6e2e40c7a
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 8f432498890670fd03a197bd3d1aa2638d1ff2b3"
bgruening
parents:
9
diff
changeset
|
7 [2019-09-08 20:35:10.412] [jointLog] [info] done |
4de6e2e40c7a
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 8f432498890670fd03a197bd3d1aa2638d1ff2b3"
bgruening
parents:
9
diff
changeset
|
8 [2019-09-08 20:35:10.412] [jointLog] [info] Building 32-bit suffix array (length of generalized text is 28,577) |
4de6e2e40c7a
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 8f432498890670fd03a197bd3d1aa2638d1ff2b3"
bgruening
parents:
9
diff
changeset
|
9 [2019-09-08 20:35:10.413] [jointLog] [info] Building suffix array . . . |
4de6e2e40c7a
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 8f432498890670fd03a197bd3d1aa2638d1ff2b3"
bgruening
parents:
9
diff
changeset
|
10 [2019-09-08 20:35:10.445] [jointLog] [info] khash had 18,902 keys |
4de6e2e40c7a
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 8f432498890670fd03a197bd3d1aa2638d1ff2b3"
bgruening
parents:
9
diff
changeset
|
11 [2019-09-08 20:35:10.445] [jointLog] [info] saving hash to disk . . . |
4de6e2e40c7a
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 8f432498890670fd03a197bd3d1aa2638d1ff2b3"
bgruening
parents:
9
diff
changeset
|
12 [2019-09-08 20:35:10.447] [jointLog] [info] done |