Mercurial > repos > bgruening > salmon

annotate README.rst @ 7:e7e885f718fb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit bae8cc7d7a88154b815acc3cd126010e7e965d5c
author bgruening
date Wed, 30 May 2018 03:19:09 -0400
parents c1d822f84e1a
children 6b0ba6de1424
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
1 Galaxy wrappers for salmon
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
2 =====================================
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
3
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
4 These wrappers are copyright 2014, updated 2016 by Björn Grüning, Mhd Ramez Alrawas and additional contributors.
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
5 All rights reserved. See the licence text below.
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
6
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
7 Currently tested with salmon 0.7.2.
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
8
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
9
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
10 Automated Installation
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
11 ======================
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
12
1
c1d822f84e1a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit f437f5e8c6c856c6f0bb8d8ea6e34f5441ee088f
bgruening
parents: 0
diff changeset
13 Galaxy should be able to automatically install the salmon for you if you have Conda dependency management enabled in Galaxy.
c1d822f84e1a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit f437f5e8c6c856c6f0bb8d8ea6e34f5441ee088f
bgruening
parents: 0
diff changeset
14 For more information please read the documentation at: https://github.com/galaxyproject/galaxy/blob/dev/doc/source/admin/conda_faq.rst
0
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
15
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
16
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
17 History
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
18 =======
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
19
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
20 ======== ======================================================================
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
21 Version Changes
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
22 -------- ----------------------------------------------------------------------
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
23 v0.6.3.0 - First release
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
24 -------- ----------------------------------------------------------------------
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
25 v0.7.2 - Second release
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
26
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
27 ======== ======================================================================
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
28
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
29
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
30 Bug Reports
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
31 ===========
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
32
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
33 You can file an issue here https://github.com/bgruening/galaxytools/issues or ask
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
34 us on the Galaxy development list http://lists.bx.psu.edu/listinfo/galaxy-dev
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
35
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
36
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
37 Licence (MIT)
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
38 =============
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
39
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
40 Permission is hereby granted, free of charge, to any person obtaining a copy
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
41 of this software and associated documentation files (the "Software"), to deal
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
42 in the Software without restriction, including without limitation the rights
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
43 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
44 copies of the Software, and to permit persons to whom the Software is
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
45 furnished to do so, subject to the following conditions:
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
46
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
47 The above copyright notice and this permission notice shall be included in
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
48 all copies or substantial portions of the Software.
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
49
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
50 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
51 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
52 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
53 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
54 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
55 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
91f3a2147127 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit d7607abc9feea09f0f8a227ead4da09323e167bb
bgruening
parents:
diff changeset
56 THE SOFTWARE.