Mercurial > repos > bgruening > salmon

changeset 1:c1d822f84e1a draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit f437f5e8c6c856c6f0bb8d8ea6e34f5441ee088f
author bgruening
date Thu, 02 Feb 2017 19:38:01 -0500
parents 91f3a2147127
children 1b22d8a18acc
files README.rst salmon.xml
diffstat 2 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/README.rst	Tue Nov 15 11:36:41 2016 -0500
+++ b/README.rst	Thu Feb 02 19:38:01 2017 -0500
@@ -10,7 +10,8 @@
 Automated Installation
 ======================
 
-Galaxy should be able to automatically install the salmon for you.
+Galaxy should be able to automatically install the salmon for you if you have Conda dependency management enabled in Galaxy.
+For more information please read the documentation at: https://github.com/galaxyproject/galaxy/blob/dev/doc/source/admin/conda_faq.rst
 
 
 History
--- a/salmon.xml	Tue Nov 15 11:36:41 2016 -0500
+++ b/salmon.xml	Thu Feb 02 19:38:01 2017 -0500
@@ -28,8 +28,8 @@
         mkdir ./index
         &&
         mkdir ./output
-        &&
         #if $refTranscriptSource.TranscriptSource == "history":
+            &&
             salmon index
                 --transcripts $refTranscriptSource.ownFile
                 --kmerLen $refTranscriptSource.kmerLen