comparison salmon.xml @ 1:c1d822f84e1a draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit f437f5e8c6c856c6f0bb8d8ea6e34f5441ee088f

0:91f3a2147127

    <version_command>salmon -version</version_command>
    <command><![CDATA[
        mkdir ./index
        &&
        mkdir ./output
        &&
        #if $refTranscriptSource.TranscriptSource == "history":
            salmon index
                --transcripts $refTranscriptSource.ownFile
                --kmerLen $refTranscriptSource.kmerLen
                --threads "\${GALAXY_SLOTS:-4}"
                --index './index'

1:c1d822f84e1a

    <version_command>salmon -version</version_command>
    <command><![CDATA[
        mkdir ./index
        &&
        mkdir ./output
        #if $refTranscriptSource.TranscriptSource == "history":
            &&
            salmon index
                --transcripts $refTranscriptSource.ownFile
                --kmerLen $refTranscriptSource.kmerLen
                --threads "\${GALAXY_SLOTS:-4}"
                --index './index'