Mercurial > repos > bgruening > salmon
changeset 1:c1d822f84e1a draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit f437f5e8c6c856c6f0bb8d8ea6e34f5441ee088f
author | bgruening |
---|---|
date | Thu, 02 Feb 2017 19:38:01 -0500 |
parents | 91f3a2147127 |
children | 1b22d8a18acc |
files | README.rst salmon.xml |
diffstat | 2 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/README.rst Tue Nov 15 11:36:41 2016 -0500 +++ b/README.rst Thu Feb 02 19:38:01 2017 -0500 @@ -10,7 +10,8 @@ Automated Installation ====================== -Galaxy should be able to automatically install the salmon for you. +Galaxy should be able to automatically install the salmon for you if you have Conda dependency management enabled in Galaxy. +For more information please read the documentation at: https://github.com/galaxyproject/galaxy/blob/dev/doc/source/admin/conda_faq.rst History
--- a/salmon.xml Tue Nov 15 11:36:41 2016 -0500 +++ b/salmon.xml Thu Feb 02 19:38:01 2017 -0500 @@ -28,8 +28,8 @@ mkdir ./index && mkdir ./output - && #if $refTranscriptSource.TranscriptSource == "history": + && salmon index --transcripts $refTranscriptSource.ownFile --kmerLen $refTranscriptSource.kmerLen