Mercurial > repos > bgruening > sambamba_flagstat

annotate test-data/2.markdup.txt @ 1:cfd6e76541ff draft default tip

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planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
author bgruening
date Mon, 10 Feb 2025 19:12:51 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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cfd6e76541ff planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
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1
cfd6e76541ff planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
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2 sambamba 1.0.1
cfd6e76541ff planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
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3 by Artem Tarasov and Pjotr Prins (C) 2012-2023
cfd6e76541ff planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
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4 LDC 1.39.0 / DMD v2.109.1 / LLVM17.0.6 / bootstrap LDC - the LLVM D compiler (1.39.0)
cfd6e76541ff planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
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5
cfd6e76541ff planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
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6 finding positions of the duplicate reads in the file...
cfd6e76541ff planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
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7 sorted 0 end pairs
cfd6e76541ff planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
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8 and 4 single ends (among them 0 unmatched pairs)
cfd6e76541ff planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
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9 collecting indices of duplicate reads... done in 0 ms
cfd6e76541ff planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
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10 found 3 duplicates
cfd6e76541ff planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
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11 collected list of positions in 0 min 0 sec
cfd6e76541ff planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
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12 marking duplicates...
cfd6e76541ff planemo upload for repository https://github.com/biod/sambamba commit 99bb4ed496a9cce79ab0a7e613230cf63a44d9f9
bgruening
parents:
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13 collected list of positions in 0 min 0 sec