Mercurial > repos > bgruening > sklearn_discriminant_classifier
annotate main_macros.xml @ 24:5552eda109bd draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
author | bgruening |
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date | Wed, 15 May 2019 07:39:54 -0400 |
parents | 75bcb7c19fcf |
children | 3e2921875c58 |
rev | line source |
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0
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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1 <macros> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
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2 <token name="@VERSION@">1.0.0.4</token> |
0
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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3 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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4 <xml name="python_requirements"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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5 <requirements> |
21
56ddc98c484e
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
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6 <requirement type="package" version="3.6">python</requirement> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
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7 <requirement type="package" version="0.20.3">scikit-learn</requirement> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
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8 <requirement type="package" version="0.24.2">pandas</requirement> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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9 <requirement type="package" version="0.80">xgboost</requirement> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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10 <requirement type="package" version="0.9.13">asteval</requirement> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
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11 <requirement type="package" version="0.6">skrebate</requirement> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
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12 <requirement type="package" version="0.4.2">imbalanced-learn</requirement> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
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13 <requirement type="package" version="0.16.0">mlxtend</requirement> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
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14 <yield/> |
0
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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changeset
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15 </requirements> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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16 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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17 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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18 <xml name="macro_stdio"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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19 <stdio> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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20 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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21 </stdio> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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changeset
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22 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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23 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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24 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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25 <!--Generic interface--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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26 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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27 <xml name="sl_Conditional" token_train="tabular" token_data="tabular" token_model="txt"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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changeset
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28 <conditional name="selected_tasks"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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29 <param name="selected_task" type="select" label="Select a Classification Task"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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30 <option value="train" selected="true">Train a model</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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31 <option value="load">Load a model and predict</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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32 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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33 <when value="load"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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34 <param name="infile_model" type="data" format="@MODEL@" label="Models" help="Select a model file."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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35 <param name="infile_data" type="data" format="@DATA@" label="Data (tabular)" help="Select the dataset you want to classify."/> |
5
8e489f4ff47c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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36 <param name="header" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
0
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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37 <conditional name="prediction_options"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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38 <param name="prediction_option" type="select" label="Select the type of prediction"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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39 <option value="predict">Predict class labels</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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40 <option value="advanced">Include advanced options</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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41 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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42 <when value="predict"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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43 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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44 <when value="advanced"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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45 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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46 </conditional> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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47 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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48 <when value="train"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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49 <conditional name="selected_algorithms"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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50 <yield /> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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51 </conditional> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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52 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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53 </conditional> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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54 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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55 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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56 <xml name="advanced_section"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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57 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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58 <yield /> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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59 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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60 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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61 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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62 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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63 <!--Generalized Linear Models--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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64 <xml name="loss" token_help=" " token_select="false"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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65 <param argument="loss" type="select" label="Loss function" help="@HELP@"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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66 <option value="squared_loss" selected="@SELECT@">squared loss</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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67 <option value="huber">huber</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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68 <option value="epsilon_insensitive">epsilon insensitive</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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69 <option value="squared_epsilon_insensitive">squared epsilon insensitive</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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70 <yield/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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71 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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72 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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73 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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74 <xml name="penalty" token_help=" "> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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75 <param argument="penalty" type="select" label="Penalty (regularization term)" help="@HELP@"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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76 <option value="l2" selected="true">l2</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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77 <option value="l1">l1</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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78 <option value="elasticnet">elastic net</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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79 <option value="none">none</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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80 <yield/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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81 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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82 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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83 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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84 <xml name="l1_ratio" token_default_value="0.15" token_help=" "> |
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85 <param argument="l1_ratio" type="float" value="@DEFAULT_VALUE@" label="Elastic Net mixing parameter" help="@HELP@"/> |
e0067d9baffc
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86 </xml> |
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87 |
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88 <xml name="epsilon" token_default_value="0.1" token_help="Used if loss is ‘huber’, ‘epsilon_insensitive’, or ‘squared_epsilon_insensitive’. "> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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89 <param argument="epsilon" type="float" value="@DEFAULT_VALUE@" label="Epsilon (epsilon-sensitive loss functions only)" help="@HELP@"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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90 </xml> |
e0067d9baffc
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91 |
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92 <xml name="learning_rate_s" token_help=" " token_selected1="false" token_selected2="false"> |
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93 <param argument="learning_rate" type="select" optional="true" label="Learning rate schedule" help="@HELP@"> |
e0067d9baffc
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94 <option value="optimal" selected="@SELECTED1@">optimal</option> |
e0067d9baffc
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95 <option value="constant">constant</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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96 <option value="invscaling" selected="@SELECTED2@">inverse scaling</option> |
e0067d9baffc
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97 <yield/> |
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98 </param> |
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99 </xml> |
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100 |
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101 <xml name="eta0" token_default_value="0.0" token_help="Used with ‘constant’ or ‘invscaling’ schedules. "> |
e0067d9baffc
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102 <param argument="eta0" type="float" value="@DEFAULT_VALUE@" label="Initial learning rate" help="@HELP@"/> |
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103 </xml> |
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104 |
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105 <xml name="power_t" token_default_value="0.5" token_help=" "> |
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106 <param argument="power_t" type="float" value="@DEFAULT_VALUE@" label="Exponent for inverse scaling learning rate" help="@HELP@"/> |
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107 </xml> |
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108 |
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109 <xml name="normalize" token_checked="false" token_help=" "> |
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110 <param argument="normalize" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Normalize samples before training" help=" "/> |
e0067d9baffc
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111 </xml> |
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112 |
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113 <xml name="copy_X" token_checked="true" token_help=" "> |
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114 <param argument="copy_X" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Use a copy of samples" help="If false, samples would be overwritten. "/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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115 </xml> |
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116 |
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117 <xml name="ridge_params"> |
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118 <expand macro="normalize"/> |
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119 <expand macro="alpha" default_value="1.0"/> |
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120 <expand macro="fit_intercept"/> |
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121 <expand macro="max_iter" default_value=""/> |
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122 <expand macro="tol" default_value="0.001" help_text="Precision of the solution. "/> |
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123 <!--class_weight--> |
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124 <expand macro="copy_X"/> |
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125 <param argument="solver" type="select" value="" label="Solver to use in the computational routines" help=" "> |
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126 <option value="auto" selected="true">auto</option> |
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127 <option value="svd">svd</option> |
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128 <option value="cholesky">cholesky</option> |
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129 <option value="lsqr">lsqr</option> |
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130 <option value="sparse_cg">sparse_cg</option> |
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131 <option value="sag">sag</option> |
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132 </param> |
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133 <expand macro="random_state"/> |
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134 </xml> |
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135 |
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136 <!--Ensemble methods--> |
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137 <xml name="n_estimators" token_default_value="10" token_help=" "> |
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138 <param argument="n_estimators" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of trees in the forest" help="@HELP@"/> |
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139 </xml> |
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140 |
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141 <xml name="max_depth" token_default_value="" token_help=" "> |
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142 <param argument="max_depth" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Maximum depth of the tree" help="@HELP@"/> |
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143 </xml> |
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144 |
5
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145 <xml name="min_samples_split" token_type="integer" token_default_value="2" token_help=" "> |
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146 <param argument="min_samples_split" type="@TYPE@" optional="true" value="@DEFAULT_VALUE@" label="Minimum number of samples required to split an internal node" help="@HELP@"/> |
0
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147 </xml> |
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148 |
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149 <xml name="min_samples_leaf" token_type="integer" token_default_value="1" token_label="Minimum number of samples in newly created leaves" token_help=" "> |
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150 <param argument="min_samples_leaf" type="@TYPE@" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP@"/> |
0
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151 </xml> |
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152 |
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153 <xml name="min_weight_fraction_leaf" token_default_value="0.0" token_help=" "> |
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154 <param argument="min_weight_fraction_leaf" type="float" optional="true" value="@DEFAULT_VALUE@" label="Minimum weighted fraction of the input samples required to be at a leaf node" help="@HELP@"/> |
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155 </xml> |
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156 |
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157 <xml name="max_leaf_nodes" token_default_value="" token_help=" "> |
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158 <param argument="max_leaf_nodes" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Maximum number of leaf nodes in best-first method" help="@HELP@"/> |
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159 </xml> |
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160 |
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161 <xml name="min_impurity_decrease" token_default_value="0" token_help=" "> |
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162 <param argument="min_impurity_decrease" type="float" value="@DEFAULT_VALUE@" optional="true" label="The threshold value of impurity for stopping node splitting" help="@HELP@"/> |
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163 </xml> |
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164 |
0
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165 <xml name="bootstrap" token_checked="true" token_help=" "> |
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166 <param argument="bootstrap" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="@CHECKED@" label="Use bootstrap samples for building trees." help="@HELP@"/> |
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167 </xml> |
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168 |
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169 <xml name="criterion" token_help=" "> |
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170 <param argument="criterion" type="select" label="Function to measure the quality of a split" help=" "> |
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171 <option value="gini" selected="true">Gini impurity</option> |
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172 <option value="entropy">Information gain</option> |
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173 <yield/> |
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174 </param> |
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175 </xml> |
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176 |
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177 <xml name="criterion2" token_help=""> |
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178 <param argument="criterion" type="select" label="Function to measure the quality of a split" > |
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179 <option value="mse">mse - mean squared error</option> |
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180 <option value="mae">mae - mean absolute error</option> |
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181 <yield/> |
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182 </param> |
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183 </xml> |
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184 |
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185 <xml name="oob_score" token_checked="false" token_help=" "> |
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186 <param argument="oob_score" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Use out-of-bag samples to estimate the generalization error" help="@HELP@"/> |
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187 </xml> |
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188 |
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189 <xml name="max_features"> |
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190 <conditional name="select_max_features"> |
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191 <param argument="max_features" type="select" label="max_features"> |
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192 <option value="auto" selected="true">auto - max_features=n_features</option> |
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193 <option value="sqrt">sqrt - max_features=sqrt(n_features)</option> |
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194 <option value="log2">log2 - max_features=log2(n_features)</option> |
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195 <option value="number_input">I want to type the number in or input None type</option> |
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196 </param> |
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197 <when value="auto"> |
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198 </when> |
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199 <when value="sqrt"> |
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200 </when> |
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201 <when value="log2"> |
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202 </when> |
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203 <when value="number_input"> |
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204 <param name="num_max_features" type="float" value="" optional="true" label="Input max_features number:" help="If int, consider the number of features at each split; If float, then max_features is a percentage and int(max_features * n_features) features are considered at each split."/> |
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205 </when> |
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206 </conditional> |
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207 </xml> |
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208 |
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209 <xml name="verbose" token_default_value="0" token_help="If 1 then it prints progress and performance once in a while. If greater than 1 then it prints progress and performance for every tree."> |
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210 <param argument="verbose" type="integer" value="@DEFAULT_VALUE@" optional="true" label="Enable verbose output" help="@HELP@"/> |
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211 </xml> |
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212 |
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213 <xml name="learning_rate" token_default_value="1.0" token_help=" "> |
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214 <param argument="learning_rate" type="float" optional="true" value="@DEFAULT_VALUE@" label="Learning rate" help="@HELP@"/> |
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215 </xml> |
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216 |
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217 <xml name="subsample" token_help=" "> |
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218 <param argument="subsample" type="float" value="1.0" optional="true" label="The fraction of samples to be used for fitting the individual base learners" help="@HELP@"/> |
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219 </xml> |
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220 |
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221 <xml name="presort"> |
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222 <param argument="presort" type="select" label="Whether to presort the data to speed up the finding of best splits in fitting" > |
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223 <option value="auto" selected="true">auto</option> |
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224 <option value="true">true</option> |
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225 <option value="false">false</option> |
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226 </param> |
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227 </xml> |
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228 |
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229 <!--Parameters--> |
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230 <xml name="tol" token_default_value="0.0" token_help_text="Early stopping heuristics based on the relative center changes. Set to default (0.0) to disable this convergence detection."> |
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231 <param argument="tol" type="float" optional="true" value="@DEFAULT_VALUE@" label="Tolerance" help="@HELP_TEXT@"/> |
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232 </xml> |
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233 |
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234 <xml name="n_clusters" token_default_value="8"> |
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235 <param argument="n_clusters" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of clusters" help=" "/> |
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236 </xml> |
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237 |
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238 <xml name="fit_intercept" token_checked="true"> |
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239 <param argument="fit_intercept" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Estimate the intercept" help="If false, the data is assumed to be already centered."/> |
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240 </xml> |
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241 |
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242 <xml name="n_iter" token_default_value="5" token_help_text="The number of passes over the training data (aka epochs). "> |
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243 <param argument="n_iter" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of iterations" help="@HELP_TEXT@"/> |
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244 </xml> |
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245 |
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246 <xml name="shuffle" token_checked="true" token_help_text=" " token_label="Shuffle data after each iteration"> |
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247 <param argument="shuffle" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="@LABEL@" help="@HELP_TEXT@"/> |
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248 </xml> |
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249 |
23
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250 <xml name="random_state" token_default_value="" token_help_text="Integer number. The seed of the pseudo random number generator to use when shuffling the data. A fixed seed allows reproducible results. default=None."> |
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251 <param argument="random_state" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Random seed number" help="@HELP_TEXT@"/> |
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252 </xml> |
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253 |
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254 <xml name="warm_start" token_checked="true" token_help_text="When set to True, reuse the solution of the previous call to fit as initialization,otherwise, just erase the previous solution."> |
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255 <param argument="warm_start" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Perform warm start" help="@HELP_TEXT@"/> |
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256 </xml> |
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257 |
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258 <xml name="C" token_default_value="1.0" token_help_text="Penalty parameter C of the error term."> |
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259 <param argument="C" type="float" optional="true" value="@DEFAULT_VALUE@" label="Penalty parameter" help="@HELP_TEXT@"/> |
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260 </xml> |
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261 |
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262 <!--xml name="class_weight" token_default_value="" token_help_text=""> |
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263 <param argument="class_weight" type="" optional="true" value="@DEFAULT_VALUE@" label="" help="@HELP_TEXT@"/> |
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264 </xml--> |
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265 |
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266 <xml name="alpha" token_default_value="0.0001" token_help_text="Constant that multiplies the regularization term if regularization is used. "> |
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267 <param argument="alpha" type="float" optional="true" value="@DEFAULT_VALUE@" label="Regularization coefficient" help="@HELP_TEXT@"/> |
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268 </xml> |
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269 |
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270 <xml name="n_samples" token_default_value="100" token_help_text="The total number of points equally divided among clusters."> |
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271 <param argument="n_samples" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of samples" help="@HELP_TEXT@"/> |
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272 </xml> |
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273 |
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274 <xml name="n_features" token_default_value="2" token_help_text="Number of different numerical properties produced for each sample."> |
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275 <param argument="n_features" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of features" help="@HELP_TEXT@"/> |
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276 </xml> |
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277 |
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278 <xml name="noise" token_default_value="0.0" token_help_text="Floating point number. "> |
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279 <param argument="noise" type="float" optional="true" value="@DEFAULT_VALUE@" label="Standard deviation of the Gaussian noise added to the data" help="@HELP_TEXT@"/> |
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280 </xml> |
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281 |
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282 <xml name="C" token_default_value="1.0" token_help_text="Penalty parameter C of the error term. "> |
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283 <param argument="C" type="float" optional="true" value="@DEFAULT_VALUE@" label="Penalty parameter" help="@HELP_TEXT@"/> |
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284 </xml> |
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285 |
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286 <xml name="max_iter" token_default_value="300" token_label="Maximum number of iterations per single run" token_help_text=" "> |
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287 <param argument="max_iter" type="integer" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/> |
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288 </xml> |
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289 |
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290 <xml name="n_init" token_default_value="10" > |
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291 <param argument="n_init" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of runs with different centroid seeds" help=" "/> |
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292 </xml> |
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293 |
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294 <xml name="init"> |
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295 <param argument="init" type="select" label="Centroid initialization method" help="''k-means++'' selects initial cluster centers that speed up convergence. ''random'' chooses k observations (rows) at random from data as initial centroids."> |
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296 <option value="k-means++">k-means++</option> |
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297 <option value="random">random</option> |
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298 </param> |
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299 </xml> |
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300 |
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301 <xml name="gamma" token_default_value="1.0" token_label="Scaling parameter" token_help_text=" "> |
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302 <param argument="gamma" type="float" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/> |
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303 </xml> |
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304 |
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305 <xml name="degree" token_default_value="3" token_label="Degree of the polynomial" token_help_text=" "> |
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306 <param argument="degree" type="integer" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/> |
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307 </xml> |
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308 |
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309 <xml name="coef0" token_default_value="1" token_label="Zero coefficient" token_help_text=" "> |
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310 <param argument="coef0" type="integer" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/> |
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311 </xml> |
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312 |
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313 <xml name="pos_label" token_default_value=""> |
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314 <param argument="pos_label" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Label of the positive class" help=" "/> |
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315 </xml> |
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316 |
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317 <xml name="average"> |
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318 <param argument="average" type="select" optional="true" label="Averaging type" help=" "> |
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319 <option value="micro">Calculate metrics globally by counting the total true positives, false negatives and false positives. (micro)</option> |
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320 <option value="samples">Calculate metrics for each instance, and find their average. Only meaningful for multilabel. (samples)</option> |
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321 <option value="macro">Calculate metrics for each label, and find their unweighted mean. This does not take label imbalance into account. (macro)</option> |
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322 <option value="weighted">Calculate metrics for each label, and find their average, weighted by support (the number of true instances for each label). This alters ‘macro’ to account for label imbalance; it can result in an F-score that is not between precision and recall. (weighted)</option> |
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323 <option value="None">None</option> |
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324 <yield/> |
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325 </param> |
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326 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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changeset
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327 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
328 <xml name="beta"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
329 <param argument="beta" type="float" value="1.0" label="The strength of recall versus precision in the F-score" help=" "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
330 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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changeset
|
331 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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changeset
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332 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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changeset
|
333 <!--Data interface--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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changeset
|
334 |
10
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
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diff
changeset
|
335 <xml name="samples_tabular" token_multiple1="false" token_multiple2="false"> |
0
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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changeset
|
336 <param name="infile1" type="data" format="tabular" label="Training samples dataset:"/> |
10
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
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diff
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337 <param name="header1" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
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diff
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338 <conditional name="column_selector_options_1"> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
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diff
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339 <expand macro="samples_column_selector_options" multiple="@MULTIPLE1@"/> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
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diff
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340 </conditional> |
19
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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diff
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341 <param name="infile2" type="data" format="tabular" label="Dataset containing class labels or target values:"/> |
10
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
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342 <param name="header2" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
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343 <conditional name="column_selector_options_2"> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
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diff
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344 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option2" col_name="col2" multiple="@MULTIPLE2@" infile="infile2"/> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
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diff
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345 </conditional> |
0
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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changeset
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346 <yield/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
347 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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changeset
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348 |
10
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
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349 <xml name="samples_column_selector_options" token_column_option="selected_column_selector_option" token_col_name="col1" token_multiple="False" token_infile="infile1"> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
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diff
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350 <param name="@COLUMN_OPTION@" type="select" label="Choose how to select data by column:"> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
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diff
changeset
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351 <option value="by_index_number" selected="true">Select columns by column index number(s)</option> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff
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352 <option value="all_but_by_index_number">All columns BUT by column index number(s)</option> |
12
cb14b6827f70
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
parents:
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diff
changeset
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353 <option value="by_header_name">Select columns by column header name(s)</option> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff
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354 <option value="all_but_by_header_name">All columns BUT by column header name(s)</option> |
10
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
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diff
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355 <option value="all_columns">All columns</option> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
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diff
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356 </param> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
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diff
changeset
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357 <when value="by_index_number"> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
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diff
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358 <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" use_header_names="true" data_ref="@INFILE@" label="Select target column(s):"/> |
10
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
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diff
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359 </when> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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diff
changeset
|
360 <when value="all_but_by_index_number"> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
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diff
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361 <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" use_header_names="true" data_ref="@INFILE@" label="Select target column(s):"/> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
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362 </when> |
12
cb14b6827f70
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
parents:
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diff
changeset
|
363 <when value="by_header_name"> |
15
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
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364 <param name="@COL_NAME@" type="text" value="" label="Type header name(s):" help="Comma-separated string. For example: target1,target2"/> |
12
cb14b6827f70
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
parents:
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365 </when> |
cb14b6827f70
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
parents:
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366 <when value="all_but_by_header_name"> |
15
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
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367 <param name="@COL_NAME@" type="text" value="" label="Type header name(s):" help="Comma-separated string. For example: target1,target2"/> |
12
cb14b6827f70
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
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368 </when> |
10
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
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diff
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369 <when value="all_columns"> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
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370 </when> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
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changeset
|
371 </xml> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
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372 |
0
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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changeset
|
373 <xml name="clf_inputs_extended" token_label1=" " token_label2=" " token_multiple="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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374 <conditional name="true_columns"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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changeset
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375 <param name="selected_input1" type="select" label="Select the input type of true labels dataset:"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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changeset
|
376 <option value="tabular" selected="true">Tabular</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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changeset
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377 <option value="sparse">Sparse</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
378 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
379 <when value="tabular"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
380 <param name="infile1" type="data" label="@LABEL1@"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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changeset
|
381 <param name="col1" type="data_column" data_ref="infile1" label="Select the target column:"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
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382 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
383 <when value="sparse"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
384 <param name="infile1" type="data" format="txt" label="@LABEL1@"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
385 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
386 </conditional> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
387 <conditional name="predicted_columns"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
388 <param name="selected_input2" type="select" label="Select the input type of predicted labels dataset:"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
389 <option value="tabular" selected="true">Tabular</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
390 <option value="sparse">Sparse</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
391 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
392 <when value="tabular"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
393 <param name="infile2" type="data" label="@LABEL2@"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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changeset
|
394 <param name="col2" multiple="@MULTIPLE@" type="data_column" data_ref="infile2" label="Select target column(s):"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
395 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
396 <when value="sparse"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
397 <param name="infile2" type="data" format="txt" label="@LABEL1@"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
398 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
399 </conditional> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
400 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
401 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
402 <xml name="clf_inputs" token_label1="Dataset containing true labels (tabular):" token_label2="Dataset containing predicted values (tabular):" token_multiple1="False" token_multiple="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
403 <param name="infile1" type="data" format="tabular" label="@LABEL1@"/> |
7
cdb7948427aa
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
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diff
changeset
|
404 <param name="header1" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
10
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
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diff
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405 <conditional name="column_selector_options_1"> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
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parents:
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diff
changeset
|
406 <expand macro="samples_column_selector_options" multiple="@MULTIPLE1@"/> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
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parents:
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diff
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|
407 </conditional> |
0
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
408 <param name="infile2" type="data" format="tabular" label="@LABEL2@"/> |
7
cdb7948427aa
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
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409 <param name="header2" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
10
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
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diff
changeset
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410 <conditional name="column_selector_options_2"> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
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411 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option2" col_name="col2" multiple="@MULTIPLE@" infile="infile2"/> |
93d391c5ba50
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
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parents:
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diff
changeset
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412 </conditional> |
0
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
413 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
414 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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diff
changeset
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415 <xml name="multiple_input" token_name="input_files" token_max_num="10" token_format="txt" token_label="Sparse matrix file (.mtx, .txt)" token_help_text="Specify a sparse matrix file in .txt format."> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
416 <repeat name="@NAME@" min="1" max="@MAX_NUM@" title="Select input file(s):"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
417 <param name="input" type="data" format="@FORMAT@" label="@LABEL@" help="@HELP_TEXT@"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
418 </repeat> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
419 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
420 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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diff
changeset
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421 <xml name="sparse_target" token_label1="Select a sparse matrix:" token_label2="Select the tabular containing true labels:" token_multiple="False" token_format1="txt" token_format2="tabular" token_help1="" token_help2=""> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
422 <param name="infile1" type="data" format="@FORMAT1@" label="@LABEL1@" help="@HELP1@"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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diff
changeset
|
423 <param name="infile2" type="data" format="@FORMAT2@" label="@LABEL2@" help="@HELP2@"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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diff
changeset
|
424 <param name="col2" multiple="@MULTIPLE@" type="data_column" data_ref="infile2" label="Select target column(s):"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
425 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
|
426 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
427 <xml name="sl_mixed_input"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
428 <conditional name="input_options"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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diff
changeset
|
429 <param name="selected_input" type="select" label="Select input type:"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
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430 <option value="tabular" selected="true">tabular data</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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changeset
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431 <option value="sparse">sparse matrix</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
432 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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433 <when value="tabular"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
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434 <expand macro="samples_tabular" multiple1="true" multiple2="false"/> |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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changeset
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435 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
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436 <when value="sparse"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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changeset
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437 <expand macro="sparse_target"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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changeset
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438 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
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439 </conditional> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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changeset
|
440 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
|
441 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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changeset
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442 <!--Advanced options--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
443 <xml name="nn_advanced_options"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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changeset
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444 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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445 <yield/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
|
446 <param argument="weights" type="select" label="Weight function" help="Used in prediction."> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
|
447 <option value="uniform" selected="true">Uniform weights. All points in each neighborhood are weighted equally. (Uniform)</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
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448 <option value="distance">Weight points by the inverse of their distance. (Distance)</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
|
449 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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changeset
|
450 <param argument="algorithm" type="select" label="Neighbor selection algorithm" help=" "> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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451 <option value="auto" selected="true">Auto</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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452 <option value="ball_tree">BallTree</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
|
453 <option value="kd_tree">KDTree</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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diff
changeset
|
454 <option value="brute">Brute-force</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
|
455 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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changeset
|
456 <param argument="leaf_size" type="integer" value="30" label="Leaf size" help="Used with BallTree and KDTree. Affects the time and memory usage of the constructed tree."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
|
457 <!--param name="metric"--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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changeset
|
458 <!--param name="p"--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
|
459 <!--param name="metric_params"--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
|
460 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
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461 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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462 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
463 <xml name="svc_advanced_options"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
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464 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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465 <yield/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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466 <param argument="kernel" type="select" optional="true" label="Kernel type" help="Kernel type to be used in the algorithm. If none is given, ‘rbf’ will be used."> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
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467 <option value="rbf" selected="true">rbf</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
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468 <option value="linear">linear</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
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469 <option value="poly">poly</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
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470 <option value="sigmoid">sigmoid</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
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471 <option value="precomputed">precomputed</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
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472 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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473 <param argument="degree" type="integer" optional="true" value="3" label="Degree of the polynomial (polynomial kernel only)" help="Ignored by other kernels. dafault : 3 "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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474 <!--TODO: param argument="gamma" float, optional (default=’auto’) --> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
|
475 <param argument="coef0" type="float" optional="true" value="0.0" label="Zero coefficient (polynomial and sigmoid kernels only)" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
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476 help="Independent term in kernel function. dafault: 0.0 "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
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477 <param argument="shrinking" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
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478 label="Use the shrinking heuristic" help=" "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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|
479 <param argument="probability" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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changeset
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480 label="Enable probability estimates. " help="This must be enabled prior to calling fit, and will slow down that method."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
|
481 <!-- param argument="cache_size"--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
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482 <!--expand macro="class_weight"/--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
|
483 <expand macro="tol" default_value="0.001" help_text="Tolerance for stopping criterion. "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
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484 <expand macro="max_iter" default_value="-1" label="Solver maximum number of iterations" help_text="Hard limit on iterations within solver, or -1 for no limit."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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|
485 <!--param argument="decision_function_shape"--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
486 <expand macro="random_state" help_text="Integer number. The seed of the pseudo random number generator to use when shuffling the data for probability estimation. A fixed seed allows reproducible results."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
487 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
488 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
489 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
490 <xml name="spectral_clustering_advanced_options"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
491 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
492 <expand macro="n_clusters"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
493 <param argument="eigen_solver" type="select" value="" label="Eigen solver" help="The eigenvalue decomposition strategy to use."> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
494 <option value="arpack" selected="true">arpack</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
495 <option value="lobpcg">lobpcg</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
496 <option value="amg">amg</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
497 <!--None--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
498 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
499 <expand macro="random_state"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
500 <expand macro="n_init"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
501 <param argument="gamma" type="float" optional="true" value="1.0" label="Kernel scaling factor" help="Scaling factor of RBF, polynomial, exponential chi^2 and sigmoid affinity kernel. Ignored for affinity=''nearest_neighbors''."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
502 <param argument="affinity" type="select" label="Affinity" help="Affinity kernel to use. "> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
503 <option value="rbf" selected="true">RBF</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
504 <option value="precomputed">precomputed</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
505 <option value="nearest_neighbors">Nearset neighbors</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
506 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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changeset
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507 <param argument="n_neighbors" type="integer" optional="true" value="10" label="Number of neighbors" help="Number of neighbors to use when constructing the affinity matrix using the nearest neighbors method. Ignored for affinity=''rbf''"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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changeset
|
508 <!--param argument="eigen_tol"--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
509 <param argument="assign_labels" type="select" label="Assign labels" help="The strategy to use to assign labels in the embedding space."> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
510 <option value="kmeans" selected="true">kmeans</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
511 <option value="discretize">discretize</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
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512 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
513 <param argument="degree" type="integer" optional="true" value="3" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
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514 label="Degree of the polynomial (polynomial kernel only)" help="Ignored by other kernels. dafault : 3 "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
515 <param argument="coef0" type="integer" optional="true" value="1" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
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516 label="Zero coefficient (polynomial and sigmoid kernels only)" help="Ignored by other kernels. dafault : 1 "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
517 <!--param argument="kernel_params"--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
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518 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
519 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
520 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
521 <xml name="minibatch_kmeans_advanced_options"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
522 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
523 <expand macro="n_clusters"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
524 <expand macro="init"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
525 <expand macro="n_init" default_value="3"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
526 <expand macro="max_iter" default_value="100"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
527 <expand macro="tol" help_text="Early stopping heuristics based on normalized center change. To disable set to 0.0 ."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
528 <expand macro="random_state"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
529 <param argument="batch_size" type="integer" optional="true" value="100" label="Batch size" help="Size of the mini batches."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
530 <!--param argument="compute_labels"--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
531 <param argument="max_no_improvement" type="integer" optional="true" value="10" label="Maximum number of improvement attempts" help=" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
532 Convergence detection based on inertia (the consecutive number of mini batches that doe not yield an improvement on the smoothed inertia). |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
533 To disable, set max_no_improvement to None. "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
534 <param argument="init_size" type="integer" optional="true" value="" label="Number of random initialization samples" help="Number of samples to randomly sample for speeding up the initialization . ( default: 3 * batch_size )"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
535 <param argument="reassignment_ratio" type="float" optional="true" value="0.01" label="Re-assignment ratio" help="Controls the fraction of the maximum number of counts for a center to be reassigned. Higher values yield better clustering results."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
536 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
537 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
538 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
539 <xml name="kmeans_advanced_options"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
540 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
541 <expand macro="n_clusters"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
542 <expand macro="init"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
543 <expand macro="n_init"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
544 <expand macro="max_iter"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
545 <expand macro="tol" default_value="0.0001" help_text="Relative tolerance with regards to inertia to declare convergence."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
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546 <!--param argument="precompute_distances"/--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
547 <expand macro="random_state"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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changeset
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548 <param argument="copy_x" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="Use a copy of data for precomputing distances" help="Mofifying the original data introduces small numerical differences caused by subtracting and then adding the data mean."/> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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diff
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549 <expand macro="kmeans_algorithm"/> |
0
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
|
550 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
551 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
552 |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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parents:
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diff
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553 <xml name="kmeans_algorithm"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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parents:
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diff
changeset
|
554 <param argument="algorithm" type="select" label="K-means algorithm to use:"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
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diff
changeset
|
555 <option value="auto" selected="true">auto</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
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diff
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|
556 <option value="full">full</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
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diff
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557 <option value="elkan">elkan</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
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diff
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558 </param> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
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diff
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|
559 </xml> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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parents:
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diff
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560 |
0
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
561 <xml name="birch_advanced_options"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
562 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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changeset
|
563 <param argument="threshold" type="float" optional="true" value="0.5" label="Subcluster radius threshold" help="The radius of the subcluster obtained by merging a new sample; the closest subcluster should be less than the threshold to avoid a new subcluster."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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changeset
|
564 <param argument="branching_factor" type="integer" optional="true" value="50" label="Maximum number of subclusters per branch" help="Maximum number of CF subclusters in each node."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
565 <expand macro="n_clusters" default_value="3"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
566 <!--param argument="compute_labels"/--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
567 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
568 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
569 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
570 <xml name="dbscan_advanced_options"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
571 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
572 <param argument="eps" type="float" optional="true" value="0.5" label="Maximum neighborhood distance" help="The maximum distance between two samples for them to be considered as in the same neighborhood."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
573 <param argument="min_samples" type="integer" optional="true" value="5" label="Minimal core point density" help="The number of samples (or total weight) in a neighborhood for a point (including the point itself) to be considered as a core point."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
574 <param argument="metric" type="text" optional="true" value="euclidean" label="Metric" help="The metric to use when calculating distance between instances in a feature array."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
575 <param argument="algorithm" type="select" label="Pointwise distance computation algorithm" help="The algorithm to be used by the NearestNeighbors module to compute pointwise distances and find nearest neighbors."> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
576 <option value="auto" selected="true">auto</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
577 <option value="ball_tree">ball_tree</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
578 <option value="kd_tree">kd_tree</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
579 <option value="brute">brute</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
580 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
581 <param argument="leaf_size" type="integer" optional="true" value="30" label="Leaf size" help="Leaf size passed to BallTree or cKDTree. Memory and time efficieny factor in tree constrution and querying."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
582 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
583 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
584 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
585 <xml name="clustering_algorithms_options"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
586 <conditional name="algorithm_options"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
587 <param name="selected_algorithm" type="select" label="Clustering Algorithm"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
588 <option value="KMeans" selected="true">KMeans</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
589 <option value="SpectralClustering">Spectral Clustering</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
590 <option value="MiniBatchKMeans">Mini Batch KMeans</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
591 <option value="DBSCAN">DBSCAN</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
592 <option value="Birch">Birch</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
593 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
594 <when value="KMeans"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
595 <expand macro="kmeans_advanced_options"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
596 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
597 <when value="DBSCAN"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
598 <expand macro="dbscan_advanced_options"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
599 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
600 <when value="Birch"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
601 <expand macro="birch_advanced_options"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
602 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
603 <when value="SpectralClustering"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
604 <expand macro="spectral_clustering_advanced_options"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
605 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
606 <when value="MiniBatchKMeans"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
607 <expand macro="minibatch_kmeans_advanced_options"/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
608 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
609 </conditional> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
610 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
611 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
612 <xml name="distance_metrics"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
613 <param argument="metric" type="select" label="Distance metric" help=" "> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
614 <option value="euclidean" selected="true">euclidean</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
615 <option value="cityblock">cityblock</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
616 <option value="cosine">cosine</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
617 <option value="l1">l1</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
618 <option value="l2">l2</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
619 <option value="manhattan">manhattan</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
620 <yield/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
621 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
622 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
623 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
624 <xml name="distance_nonsparse_metrics"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
625 <option value="braycurtis">braycurtis</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
626 <option value="canberra">canberra</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
627 <option value="chebyshev">chebyshev</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
628 <option value="correlation">correlation</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
629 <option value="dice">dice</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
630 <option value="hamming">hamming</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
631 <option value="jaccard">jaccard</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
632 <option value="kulsinski">kulsinski</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
633 <option value="mahalanobis">mahalanobis</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
634 <option value="matching">matching</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
635 <option value="minkowski">minkowski</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
636 <option value="rogerstanimoto">rogerstanimoto</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
637 <option value="russellrao">russellrao</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
638 <option value="seuclidean">seuclidean</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
639 <option value="sokalmichener">sokalmichener</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
640 <option value="sokalsneath">sokalsneath</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
641 <option value="sqeuclidean">sqeuclidean</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
642 <option value="yule">yule</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
643 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
644 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
645 <xml name="pairwise_kernel_metrics"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
646 <param argument="metric" type="select" label="Pirwise Kernel metric" help=" "> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
647 <option value="rbf" selected="true">rbf</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
648 <option value="sigmoid">sigmoid</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
649 <option value="polynomial">polynomial</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
650 <option value="linear" selected="true">linear</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
651 <option value="chi2">chi2</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
652 <option value="additive_chi2">additive_chi2</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
653 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
654 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
655 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
656 <xml name="sparse_pairwise_metric_functions"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
657 <param name="selected_metric_function" type="select" label="Select the pairwise metric you want to compute:"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
658 <option value="euclidean_distances" selected="true">Euclidean distance matrix</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
659 <option value="pairwise_distances">Distance matrix</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
660 <option value="pairwise_distances_argmin">Minimum distances between one point and a set of points</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
661 <yield/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
662 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
663 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
664 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
665 <xml name="pairwise_metric_functions"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
666 <option value="additive_chi2_kernel" >Additive chi-squared kernel</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
667 <option value="chi2_kernel">Exponential chi-squared kernel</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
668 <option value="linear_kernel">Linear kernel</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
669 <option value="manhattan_distances">L1 distances</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
670 <option value="pairwise_kernels">Kernel</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
671 <option value="polynomial_kernel">Polynomial kernel</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
672 <option value="rbf_kernel">Gaussian (rbf) kernel</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
673 <option value="laplacian_kernel">Laplacian kernel</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
674 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
675 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
676 <xml name="sparse_pairwise_condition"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
677 <when value="pairwise_distances"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
678 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
679 <expand macro="distance_metrics"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
680 <yield/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
681 </expand> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
682 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
683 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
684 <when value="euclidean_distances"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
685 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
686 <param argument="squared" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
687 label="Return squared Euclidean distances" help=" "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
688 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
689 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
690 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
691 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
692 <xml name="argmin_distance_condition"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
693 <when value="pairwise_distances_argmin"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
694 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
695 <param argument="axis" type="integer" optional="true" value="1" label="Axis" help="Axis along which the argmin and distances are to be computed."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
696 <expand macro="distance_metrics"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
697 <yield/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
698 </expand> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
699 <param argument="batch_size" type="integer" optional="true" value="500" label="Batch size" help="Number of rows to be processed in each batch run."/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
700 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
701 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
702 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
703 |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
704 <xml name="sparse_preprocessors"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
705 <param name="selected_pre_processor" type="select" label="Select a preprocessor:"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
706 <option value="StandardScaler" selected="true">Standard Scaler (Standardizes features by removing the mean and scaling to unit variance)</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
707 <option value="Binarizer">Binarizer (Binarizes data)</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
708 <option value="Imputer">Imputer (Completes missing values)</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
709 <option value="MaxAbsScaler">Max Abs Scaler (Scales features by their maximum absolute value)</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
710 <option value="Normalizer">Normalizer (Normalizes samples individually to unit norm)</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
711 <yield/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
712 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
713 </xml> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
714 |
15
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
715 <xml name="sparse_preprocessors_ext"> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
716 <expand macro="sparse_preprocessors"> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
717 <option value="KernelCenterer">Kernel Centerer (Centers a kernel matrix)</option> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
718 <option value="MinMaxScaler">Minmax Scaler (Scales features to a range)</option> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
719 <option value="PolynomialFeatures">Polynomial Features (Generates polynomial and interaction features)</option> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
720 <option value="RobustScaler">Robust Scaler (Scales features using outlier-invariance statistics)</option> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
721 </expand> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
722 </xml> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
723 |
0
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
724 <xml name="sparse_preprocessor_options"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
725 <when value="Binarizer"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
726 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
727 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
728 label="Use a copy of data for precomputing binarization" help=" "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
729 <param argument="threshold" type="float" optional="true" value="0.0" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
730 label="Threshold" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
731 help="Feature values below or equal to this are replaced by 0, above it by 1. Threshold may not be less than 0 for operations on sparse matrices. "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
732 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
733 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
734 <when value="Imputer"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
735 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
736 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
737 label="Use a copy of data for precomputing imputation" help=" "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
738 <param argument="strategy" type="select" optional="true" label="Imputation strategy" help=" "> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
739 <option value="mean" selected="true">Replace missing values using the mean along the axis</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
740 <option value="median">Replace missing values using the median along the axis</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
741 <option value="most_frequent">Replace missing using the most frequent value along the axis</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
742 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
743 <param argument="missing_values" type="text" optional="true" value="NaN" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
744 label="Placeholder for missing values" help="For missing values encoded as numpy.nan, use the string value “NaN”"/> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
745 <!--param argument="axis" type="boolean" optional="true" truevalue="1" falsevalue="0" |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
746 label="Impute along axis = 1" help="If fasle, axis = 0 is selected for imputation. "/> --> |
0
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
747 <!--param argument="axis" type="select" optional="true" label="The axis along which to impute" help=" "> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
748 <option value="0" selected="true">Impute along columns</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
749 <option value="1">Impute along rows</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
750 </param--> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
751 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
752 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
753 <when value="StandardScaler"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
754 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
755 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
756 label="Use a copy of data for performing inplace scaling" help=" "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
757 <param argument="with_mean" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
758 label="Center the data before scaling" help=" "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
759 <param argument="with_std" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
760 label="Scale the data to unit variance (or unit standard deviation)" help=" "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
761 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
762 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
763 <when value="MaxAbsScaler"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
764 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
765 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
766 label="Use a copy of data for precomputing scaling" help=" "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
767 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
768 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
769 <when value="Normalizer"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
770 <section name="options" title="Advanced Options" expanded="False"> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
771 <param argument="norm" type="select" optional="true" label="The norm to use to normalize non zero samples" help=" "> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
772 <option value="l1" selected="true">l1</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
773 <option value="l2">l2</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
774 <option value="max">max</option> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
775 </param> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
776 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
777 label="Use a copy of data for precomputing row normalization" help=" "/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
778 </section> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
779 </when> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
780 <yield/> |
e0067d9baffc
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
781 </xml> |
15
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
782 |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
783 <xml name="sparse_preprocessor_options_ext"> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
784 <expand macro="sparse_preprocessor_options"> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
785 <when value="KernelCenterer"> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
786 <section name="options" title="Advanced Options" expanded="False"> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
787 </section> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
788 </when> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
789 <when value="MinMaxScaler"> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
790 <section name="options" title="Advanced Options" expanded="False"> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
791 <!--feature_range--> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
792 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
793 label="Use a copy of data for precomputing normalization" help=" "/> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
794 </section> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
795 </when> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
796 <when value="PolynomialFeatures"> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
797 <section name="options" title="Advanced Options" expanded="False"> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
798 <param argument="degree" type="integer" optional="true" value="2" label="The degree of the polynomial features " help=""/> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
799 <param argument="interaction_only" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="false" label="Produce interaction features only" help="(Features that are products of at most degree distinct input features) "/> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
800 <param argument="include_bias" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" label="Include a bias column" help="Feature in which all polynomial powers are zero "/> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
801 </section> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
802 </when> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
803 <when value="RobustScaler"> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
804 <section name="options" title="Advanced Options" expanded="False"> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
805 <!--=True, =True, copy=True--> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
806 <param argument="with_centering" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
807 label="Center the data before scaling" help=" "/> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
808 <param argument="with_scaling" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
809 label="Scale the data to interquartile range" help=" "/> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
810 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
811 label="Use a copy of data for inplace scaling" help=" "/> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
812 </section> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
813 </when> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
814 </expand> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
815 </xml> |
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
816 |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
817 <xml name="cv_splitter"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
818 <option value="default" selected="true">default splitter</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
819 <option value="KFold">KFold</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
820 <option value="StratifiedKFold">StratifiedKFold</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
821 <option value="LeaveOneOut">LeaveOneOut</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
822 <option value="LeavePOut">LeavePOut</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
823 <option value="RepeatedKFold">RepeatedKFold</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
824 <option value="RepeatedStratifiedKFold">RepeatedStratifiedKFold</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
825 <option value="ShuffleSplit">ShuffleSplit</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
826 <option value="StratifiedShuffleSplit">StratifiedShuffleSplit</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
827 <option value="TimeSeriesSplit">TimeSeriesSplit</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
828 <option value="PredefinedSplit">PredefinedSplit</option> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
829 <option value="OrderedKFold">OrderedKFold</option> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
830 <option value="RepeatedOrderedKFold">RepeatedOrderedKFold</option> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
831 <yield/> |
16
0b57ef8831fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
832 </xml> |
0b57ef8831fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
833 |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
834 <xml name="cv_splitter_options"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
835 <when value="default"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
836 <expand macro="cv_n_splits"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
837 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
838 <when value="KFold"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
839 <expand macro="cv_n_splits"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
840 <expand macro="cv_shuffle"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
841 <expand macro="random_state"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
842 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
843 <when value="StratifiedKFold"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
844 <expand macro="cv_n_splits"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
845 <expand macro="cv_shuffle"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
846 <expand macro="random_state"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
847 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
848 <when value="LeaveOneOut"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
849 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
850 <when value="LeavePOut"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
851 <param argument="p" type="integer" value="" label="p" help="Integer. Size of the test sets."/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
852 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
853 <when value="RepeatedKFold"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
854 <expand macro="cv_n_splits" value="5"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
855 <param argument="n_repeats" type="integer" value="10" label="n_repeats" help="Number of times cross-validator needs to be repeated." /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
856 <expand macro="random_state" /> |
16
0b57ef8831fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
857 </when> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
858 <when value="RepeatedStratifiedKFold"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
859 <expand macro="cv_n_splits" value="5"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
860 <param argument="n_repeats" type="integer" value="10" label="n_repeats" help="Number of times cross-validator needs to be repeated." /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
861 <expand macro="random_state" /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
862 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
863 <when value="ShuffleSplit"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
864 <expand macro="cv_n_splits" value="10" help="Number of re-shuffling and splitting iterations."/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
865 <expand macro="cv_test_size" value="0.1" /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
866 <expand macro="random_state"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
867 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
868 <when value="StratifiedShuffleSplit"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
869 <expand macro="cv_n_splits" value="10" help="Number of re-shuffling and splitting iterations."/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
870 <expand macro="cv_test_size" value="0.1" /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
871 <expand macro="random_state"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
872 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
873 <when value="TimeSeriesSplit"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
874 <expand macro="cv_n_splits"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
875 <param argument="max_train_size" type="integer" value="" optional="true" label="Maximum size of the training set" help="Maximum size for a single training set." /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
876 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
877 <when value="PredefinedSplit"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
878 <param argument="test_fold" type="text" value="" area="true" label="test_fold" help="List, e.g., [0, 1, -1, 1], represents two test sets, [X[0]] and [X[1], X[3]], X[2] is excluded from any test set due to '-1'."/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
879 </when> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
880 <when value="OrderedKFold"> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
881 <expand macro="cv_n_splits"/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
882 <expand macro="cv_shuffle"/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
883 <expand macro="random_state"/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
884 </when> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
885 <when value="RepeatedOrderedKFold"> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
886 <expand macro="cv_n_splits"/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
887 <param argument="n_repeats" type="integer" value="5"/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
888 <expand macro="random_state"/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
889 </when> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
890 <yield/> |
9
1b2b2d304e44
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
8
diff
changeset
|
891 </xml> |
15
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
892 |
19
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
893 <xml name="cv"> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
894 <conditional name="cv_selector"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
895 <param name="selected_cv" type="select" label="Select the cv splitter:"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
896 <expand macro="cv_splitter"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
897 <option value="GroupKFold">GroupKFold</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
898 <option value="GroupShuffleSplit">GroupShuffleSplit</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
899 <option value="LeaveOneGroupOut">LeaveOneGroupOut</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
900 <option value="LeavePGroupsOut">LeavePGroupsOut</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
901 </expand> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
902 </param> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
903 <expand macro="cv_splitter_options"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
904 <when value="GroupKFold"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
905 <expand macro="cv_n_splits"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
906 <expand macro="cv_groups" /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
907 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
908 <when value="GroupShuffleSplit"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
909 <expand macro="cv_n_splits" value="5"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
910 <expand macro="cv_test_size"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
911 <expand macro="random_state"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
912 <expand macro="cv_groups"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
913 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
914 <when value="LeaveOneGroupOut"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
915 <expand macro="cv_groups"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
916 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
917 <when value="LeavePGroupsOut"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
918 <param argument="n_groups" type="integer" value="" label="n_groups" help="Number of groups (p) to leave out in the test split." /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
919 <expand macro="cv_groups"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
920 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
921 </expand> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
922 </conditional> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
923 </xml> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
924 |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
925 <xml name="cv_reduced"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
926 <conditional name="cv_selector"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
927 <param name="selected_cv" type="select" label="Select the cv splitter:"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
928 <expand macro="cv_splitter"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
929 </param> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
930 <expand macro="cv_splitter_options"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
931 </conditional> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
932 </xml> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
933 |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
934 <xml name="cv_n_splits" token_value="3" token_help="Number of folds. Must be at least 2."> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
935 <param argument="n_splits" type="integer" value="@VALUE@" min="2" label="n_splits" help="@HELP@"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
936 </xml> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
937 |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
938 <xml name="cv_shuffle"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
939 <param argument="shuffle" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="Whether to shuffle data before splitting" /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
940 </xml> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
941 |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
942 <xml name="cv_test_size" token_value="0.2"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
943 <param argument="test_size" type="float" value="@VALUE@" min="0.0" label="Portion or number of the test set" help="0.0-1.0, proportion of the dataset to include in the test split; >1, integer only, the absolute number of test samples "/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
944 </xml> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
945 |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
946 <xml name="cv_groups" > |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
947 <section name="groups_selector" title="Groups column selector" expanded="true"> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
948 <param name="infile_g" type="data" format="tabular" label="Choose dataset containing groups info:"/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
949 <param name="header_g" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
950 <conditional name="column_selector_options_g"> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
951 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option_g" col_name="col_g" multiple="False" infile="infile_g"/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
952 </conditional> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
953 </section> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
954 </xml> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
955 |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
956 <xml name="feature_selection_algorithms"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
957 <option value="SelectKBest" selected="true">SelectKBest - Select features according to the k highest scores</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
958 <option value="GenericUnivariateSelect">GenericUnivariateSelect - Univariate feature selector with configurable strategy</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
959 <option value="SelectPercentile">SelectPercentile - Select features according to a percentile of the highest scores</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
960 <option value="SelectFpr">SelectFpr - Filter: Select the p-values below alpha based on a FPR test</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
961 <option value="SelectFdr">SelectFdr - Filter: Select the p-values for an estimated false discovery rate</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
962 <option value="SelectFwe">SelectFwe - Filter: Select the p-values corresponding to Family-wise error rate</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
963 <option value="VarianceThreshold">VarianceThreshold - Feature selector that removes all low-variance features</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
964 <option value="SelectFromModel">SelectFromModel - Meta-transformer for selecting features based on importance weights</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
965 <option value="RFE">RFE - Feature ranking with recursive feature elimination</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
966 <option value="RFECV">RFECV - Feature ranking with recursive feature elimination and cross-validated selection of the best number of features</option> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
967 <yield/> |
19
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
968 </xml> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
969 |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
970 <xml name="feature_selection_algorithm_details"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
971 <when value="GenericUnivariateSelect"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
972 <expand macro="feature_selection_score_function" /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
973 <section name="options" title="Advanced Options" expanded="False"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
974 <param argument="mode" type="select" label="Feature selection mode"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
975 <option value="percentile">percentile</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
976 <option value="k_best">k_best</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
977 <option value="fpr">fpr</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
978 <option value="fdr">fdr</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
979 <option value="fwe">fwe</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
980 </param> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
981 <param argument="param" type="float" value="" optional="true" label="Parameter of the corresponding mode" help="float or int depending on the feature selection mode" /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
982 </section> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
983 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
984 <when value="SelectPercentile"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
985 <expand macro="feature_selection_score_function" /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
986 <section name="options" title="Advanced Options" expanded="False"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
987 <param argument="percentile" type="integer" value="10" optional="True" label="Percent of features to keep" /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
988 </section> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
989 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
990 <when value="SelectKBest"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
991 <expand macro="feature_selection_score_function" /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
992 <section name="options" title="Advanced Options" expanded="False"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
993 <param argument="k" type="integer" value="10" optional="True" label="Number of top features to select" help="No 'all' option is supported." /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
994 </section> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
995 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
996 <when value="SelectFpr"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
997 <expand macro="feature_selection_score_function" /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
998 <section name="options" title="Advanced Options" expanded="False"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
999 <param argument="alpha" type="float" value="" optional="True" label="Alpha" help="The highest p-value for features to be kept."/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1000 </section> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1001 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1002 <when value="SelectFdr"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1003 <expand macro="feature_selection_score_function" /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1004 <section name="options" title="Advanced Options" expanded="False"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1005 <param argument="alpha" type="float" value="" optional="True" label="Alpha" help="The highest uncorrected p-value for features to keep."/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1006 </section> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1007 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1008 <when value="SelectFwe"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1009 <expand macro="feature_selection_score_function" /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1010 <section name="options" title="Advanced Options" expanded="False"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1011 <param argument="alpha" type="float" value="" optional="True" label="Alpha" help="The highest uncorrected p-value for features to keep."/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1012 </section> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1013 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1014 <when value="VarianceThreshold"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1015 <section name="options" title="Options" expanded="False"> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1016 <param argument="threshold" type="float" value="0.0" optional="True" label="Threshold" help="Features with a training-set variance lower than this threshold will be removed."/> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1017 </section> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1018 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1019 </xml> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1020 |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1021 <xml name="feature_selection_SelectFromModel"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1022 <when value="SelectFromModel"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1023 <conditional name="model_inputter"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1024 <param name="input_mode" type="select" label="Construct a new estimator from a selection list?" > |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1025 <option value="new" selected="true">Yes</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1026 <option value="prefitted">No. Load a prefitted estimator</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1027 </param> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1028 <when value="new"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1029 <expand macro="estimator_selector_fs"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1030 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1031 <when value="prefitted"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1032 <param name="fitted_estimator" type="data" format='zip' label="Load a prefitted estimator" /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1033 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1034 </conditional> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1035 <expand macro="feature_selection_SelectFromModel_options"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1036 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1037 </xml> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1038 |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1039 <xml name="feature_selection_SelectFromModel_no_prefitted"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1040 <when value="SelectFromModel"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1041 <conditional name="model_inputter"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1042 <param name="input_mode" type="select" label="Construct a new estimator from a selection list?" > |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1043 <option value="new" selected="true">Yes</option> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1044 </param> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1045 <when value="new"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1046 <expand macro="estimator_selector_all"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1047 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1048 </conditional> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1049 <expand macro="feature_selection_SelectFromModel_options"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1050 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1051 </xml> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1052 |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1053 <xml name="feature_selection_SelectFromModel_options"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1054 <section name="options" title="Advanced Options" expanded="False"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1055 <param argument="threshold" type="text" value="" optional="true" label="threshold" help="The threshold value to use for feature selection. e.g. 'mean', 'median', '1.25*mean'." /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1056 <param argument="norm_order" type="integer" value="1" label="norm_order" help="Order of the norm used to filter the vectors of coefficients below threshold in the case where the coef_ attribute of the estimator is of dimension 2. " /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1057 <param argument="max_features" type="integer" value="" optional="true" label="The maximum number of features selected scoring above threshold" help="To disable threshold and only select based on max_features, set threshold=-np.inf."/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1058 </section> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1059 </xml> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1060 |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1061 <xml name="feature_selection_RFE"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1062 <when value="RFE"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1063 <yield/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1064 <section name="options" title="Advanced Options" expanded="False"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1065 <param argument="n_features_to_select" type="integer" value="" optional="true" label="n_features_to_select" help="The number of features to select. If None, half of the features are selected." /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1066 <param argument="step" type="float" value="1" label="step" optional="true" help="Default = 1. " /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1067 <param argument="verbose" type="integer" value="0" label="verbose" help="Controls verbosity of output." /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1068 </section> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1069 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1070 </xml> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1071 |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1072 <xml name="feature_selection_RFECV_fs"> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1073 <when value="RFECV"> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1074 <yield/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1075 <section name="options" title="Advanced Options" expanded="False"> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1076 <param argument="step" type="float" value="1" label="step" optional="true" help="Default = 1. " /> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1077 <param argument="min_features_to_select" type="integer" value="1" optional="true" label="The minimum number of features to be selected"/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1078 <expand macro="cv"/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1079 <expand macro="scoring_selection"/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1080 <param argument="verbose" type="integer" value="0" label="verbose" help="Controls verbosity of output." /> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1081 </section> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1082 </when> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1083 </xml> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1084 |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1085 <xml name="feature_selection_RFECV_pipeline"> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1086 <when value="RFECV"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1087 <yield/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1088 <section name="options" title="Advanced Options" expanded="False"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1089 <param argument="step" type="float" value="1" label="step" optional="true" help="Default = 1. " /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1090 <param argument="min_features_to_select" type="integer" value="1" optional="true" label="The minimum number of features to be selected"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1091 <expand macro="cv_reduced"/> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
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diff
changeset
|
1092 <!-- TODO: group splitter support--> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1093 <expand macro="scoring_selection"/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1094 <param argument="verbose" type="integer" value="0" label="verbose" help="Controls verbosity of output." /> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1095 </section> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1096 </when> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1097 </xml> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1098 |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1099 <xml name="feature_selection_DyRFECV_fs"> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1100 <when value="DyRFECV"> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
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diff
changeset
|
1101 <yield/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1102 <section name="options" title="Advanced Options" expanded="False"> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
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diff
changeset
|
1103 <param argument="step" type="text" size="30" value="1" label="step" optional="true" help="Default = 1. Support float, int and list." > |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
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diff
changeset
|
1104 <sanitizer> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
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diff
changeset
|
1105 <valid initial="default"> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
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diff
changeset
|
1106 <add value="["/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
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diff
changeset
|
1107 <add value="]"/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
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diff
changeset
|
1108 </valid> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
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diff
changeset
|
1109 </sanitizer> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
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diff
changeset
|
1110 </param> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
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diff
changeset
|
1111 <param argument="min_features_to_select" type="integer" value="1" optional="true" label="The minimum number of features to be selected"/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
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diff
changeset
|
1112 <expand macro="cv"/> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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parents:
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diff
changeset
|
1113 <expand macro="scoring_selection"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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parents:
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diff
changeset
|
1114 <param argument="verbose" type="integer" value="0" label="verbose" help="Controls verbosity of output." /> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
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diff
changeset
|
1115 </section> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
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changeset
|
1116 </when> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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parents:
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diff
changeset
|
1117 </xml> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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parents:
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diff
changeset
|
1118 |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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parents:
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diff
changeset
|
1119 <xml name="feature_selection_pipeline"> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
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diff
changeset
|
1120 <!--compare to `feature_selection_fs`, no fitted estimator for SelectFromModel and no custom estimator for RFE and RFECV--> |
16
0b57ef8831fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
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diff
changeset
|
1121 <conditional name="fs_algorithm_selector"> |
8
b1c2fe7df3f3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
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parents:
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diff
changeset
|
1122 <param name="selected_algorithm" type="select" label="Select a feature selection algorithm"> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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parents:
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changeset
|
1123 <expand macro="feature_selection_algorithms"/> |
8
b1c2fe7df3f3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
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parents:
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diff
changeset
|
1124 </param> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
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diff
changeset
|
1125 <expand macro="feature_selection_algorithm_details"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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changeset
|
1126 <expand macro="feature_selection_SelectFromModel_no_prefitted"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1127 <expand macro="feature_selection_RFE"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1128 <expand macro="estimator_selector_all"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1129 </expand> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1130 <expand macro="feature_selection_RFECV_pipeline"> |
16
0b57ef8831fb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1131 <expand macro="estimator_selector_all"/> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1132 </expand> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1133 <!-- TODO: add DyRFECV to pipeline--> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1134 </conditional> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1135 </xml> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1136 |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1137 <xml name="feature_selection_fs"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1138 <conditional name="fs_algorithm_selector"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1139 <param name="selected_algorithm" type="select" label="Select a feature selection algorithm"> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1140 <expand macro="feature_selection_algorithms"> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1141 <option value="DyRFECV">DyRFECV - Extended RFECV with changeable steps</option> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1142 </expand> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1143 </param> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1144 <expand macro="feature_selection_algorithm_details"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1145 <expand macro="feature_selection_SelectFromModel"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1146 <expand macro="feature_selection_RFE"> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1147 <expand macro="estimator_selector_fs"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1148 </expand> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1149 <expand macro="feature_selection_RFECV_fs"> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1150 <expand macro="estimator_selector_fs"/> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1151 </expand> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1152 <expand macro="feature_selection_DyRFECV_fs"> |
23
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1153 <expand macro="estimator_selector_fs"/> |
75bcb7c19fcf
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
21
diff
changeset
|
1154 </expand> |
8
b1c2fe7df3f3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1155 </conditional> |
b1c2fe7df3f3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1156 </xml> |
15
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
1157 |
6
e44443b071da
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1158 <xml name="feature_selection_score_function"> |
e44443b071da
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1159 <param argument="score_func" type="select" label="Select a score function"> |
e44443b071da
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1160 <option value="chi2">chi2 - Compute chi-squared stats between each non-negative feature and class</option> |
e44443b071da
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1161 <option value="f_classif">f_classif - Compute the ANOVA F-value for the provided sample</option> |
e44443b071da
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1162 <option value="f_regression">f_regression - Univariate linear regression tests</option> |
e44443b071da
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1163 <option value="mutual_info_classif">mutual_info_classif - Estimate mutual information for a discrete target variable</option> |
e44443b071da
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1164 <option value="mutual_info_regression">mutual_info_regression - Estimate mutual information for a continuous target variable</option> |
e44443b071da
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1165 </param> |
e44443b071da
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1166 </xml> |
15
fb232caca397
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
1167 |
7
cdb7948427aa
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1168 <xml name="model_validation_common_options"> |
19
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1169 <expand macro="cv"/> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1170 <!-- expand macro="verbose"/> --> |
7
cdb7948427aa
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1171 <yield/> |
cdb7948427aa
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1172 </xml> |
cdb7948427aa
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1173 |
19
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1174 <xml name="scoring_selection"> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1175 <conditional name="scoring"> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1176 <param name="primary_scoring" type="select" multiple="false" label="Select the primary metric (scoring):" help="Metric to refit the best estimator."> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1177 <option value="default" selected="true">default with estimator</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1178 <option value="accuracy">Classification -- 'accuracy'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1179 <option value="balanced_accuracy">Classification -- 'balanced_accuracy'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1180 <option value="average_precision">Classification -- 'average_precision'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1181 <option value="f1">Classification -- 'f1'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1182 <option value="f1_micro">Classification -- 'f1_micro'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1183 <option value="f1_macro">Classification -- 'f1_macro'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1184 <option value="f1_weighted">Classification -- 'f1_weighted'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1185 <option value="f1_samples">Classification -- 'f1_samples'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1186 <option value="neg_log_loss">Classification -- 'neg_log_loss'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1187 <option value="precision">Classification -- 'precision'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1188 <option value="precision_micro">Classification -- 'precision_micro'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1189 <option value="precision_macro">Classification -- 'precision_macro'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1190 <option value="precision_wighted">Classification -- 'precision_wighted'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1191 <option value="precision_samples">Classification -- 'precision_samples'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1192 <option value="recall">Classification -- 'recall'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1193 <option value="recall_micro">Classification -- 'recall_micro'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1194 <option value="recall_macro">Classification -- 'recall_macro'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1195 <option value="recall_wighted">Classification -- 'recall_wighted'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1196 <option value="recall_samples">Classification -- 'recall_samples'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1197 <option value="roc_auc">Classification -- 'roc_auc'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1198 <option value="explained_variance">Regression -- 'explained_variance'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1199 <option value="neg_mean_absolute_error">Regression -- 'neg_mean_absolute_error'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1200 <option value="neg_mean_squared_error">Regression -- 'neg_mean_squared_error'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1201 <option value="neg_mean_squared_log_error">Regression -- 'neg_mean_squared_log_error'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1202 <option value="neg_median_absolute_error">Regression -- 'neg_median_absolute_error'</option> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
|
1203 <option value="r2">Regression -- 'r2'</option> |
24
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
parents:
23
diff
changeset
|
1204 <option value="binarize_auc_scorer">anomaly detection -- binarize_auc_scorer</option> |
5552eda109bd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ab963ec9498bd05d2fb2f24f75adb2fccae7958c
bgruening
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1205 <option value="binarize_average_precision_scorer">anomaly detection -- binarize_average_precision_scorer</option> |
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98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
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1206 </param> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
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1207 <when value="default"/> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
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1208 <when value="accuracy"><expand macro="secondary_scoring_selection_classification"/></when> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
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1209 <when value="balanced_accuracy"><expand macro="secondary_scoring_selection_classification"/></when> |
98b632c407ae
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
18
diff
changeset
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1210 <when value="average_precision"><expand macro="secondary_scoring_selection_classification"/></when> |