Mercurial > repos > bgruening > sklearn_generalized_linear

comparison generalized_linear.xml @ 4:fd6c50f21cd0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit cea052cf3b8dd4f3620253bd222e126de32e7466
author bgruening
date Thu, 22 Mar 2018 13:47:44 -0400
parents 3326dd4f1e8d
children 44699d79d908
comparison
equal deleted inserted replaced
3:be8d2100f07b 4:fd6c50f21cd0
31 31
32 algorithm = params["selected_tasks"]["selected_algorithms"]["selected_algorithm"] 32 algorithm = params["selected_tasks"]["selected_algorithms"]["selected_algorithm"]
33 options = params["selected_tasks"]["selected_algorithms"]["options"] 33 options = params["selected_tasks"]["selected_algorithms"]["options"]
34 34
35 #if $selected_tasks.selected_algorithms.input_options.selected_input=="tabular": 35 #if $selected_tasks.selected_algorithms.input_options.selected_input=="tabular":
36 header = 'infer' if params["selected_tasks"]["selected_algorithms"]["input_options"]["header1"] else None
36 X = read_columns( 37 X = read_columns(
37 "$selected_tasks.selected_algorithms.input_options.infile1", 38 "$selected_tasks.selected_algorithms.input_options.infile1",
38 "$selected_tasks.selected_algorithms.input_options.col1", 39 "$selected_tasks.selected_algorithms.input_options.col1",
39 sep='\t', 40 sep='\t',
40 header=None, 41 header=header,
41 parse_dates=True 42 parse_dates=True
42 ) 43 )
43 #else: 44 #else:
44 X = mmread(open("$selected_tasks.selected_algorithms.input_options.infile1", 'r')) 45 X = mmread(open("$selected_tasks.selected_algorithms.input_options.infile1", 'r'))
45 #end if 46 #end if
46 47
48 header = 'infer' if params["selected_tasks"]["selected_algorithms"]["input_options"]["header2"] else None
47 y = read_columns( 49 y = read_columns(
48 "$selected_tasks.selected_algorithms.input_options.infile2", 50 "$selected_tasks.selected_algorithms.input_options.infile2",
49 "$selected_tasks.selected_algorithms.input_options.col2", 51 "$selected_tasks.selected_algorithms.input_options.col2",
50 sep='\t', 52 sep='\t',
51 header=None, 53 header=header,
52 parse_dates=True 54 parse_dates=True
53 ) 55 )
54 56
55 my_class = getattr(sklearn.linear_model, algorithm) 57 my_class = getattr(sklearn.linear_model, algorithm)
56 estimator = my_class(**options) 58 estimator = my_class(**options)