Mercurial > repos > bgruening > sklearn_searchcv
annotate search_model_validation.xml @ 19:cb5635e30842 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
author | bgruening |
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date | Tue, 13 Apr 2021 18:41:36 +0000 |
parents | c1ca24a1509d |
children | 301e07345c93 |
rev | line source |
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19
cb5635e30842
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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1 <tool id="sklearn_searchcv" name="Hyperparameter Search" version="@VERSION@" profile="20.05"> |
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c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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2 <description>performs hyperparameter optimization using various SearchCVs</description> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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3 <macros> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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4 <import>main_macros.xml</import> |
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c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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5 <macro name="search_cv_estimator"> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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6 <param name="infile_estimator" type="data" format="zip" label="Choose the dataset containing pipeline/estimator object"/> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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7 <param name="is_deep_learning" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="Is the estimator a deep learning model?"/> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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8 <section name="search_params_builder" title="Search parameters Builder" expanded="true"> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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9 <param name="infile_params" type="data" format="tabular" optional="true" label="Choose the dataset containing parameter names" help="This dataset could be the output of `get_params` in the `Estimator Attributes` tool."/> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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10 <repeat name="param_set" min="1" max="30" title="Parameter settings for search:"> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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11 <param name="sp_name" type="select" optional="true" label="Choose a parameter name (with current value)"> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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12 <options from_dataset="infile_params" startswith="@"> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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13 <column name="name" index="2"/> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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14 <column name="value" index="1"/> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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15 <filter type="unique_value" name="unique_param" column="1"/> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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16 </options> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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17 </param> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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18 <param name="sp_list" type="text" value="" optional="true" label="Search list" help="list or array-like, for example: [1, 10, 100, 1000], [True, False] and ['auto', 'sqrt', None]. See `help` section for more examples"> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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19 <sanitizer> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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20 <valid initial="default"> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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21 <add value="'"/> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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22 <add value="""/> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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23 <add value="["/> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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24 <add value="]"/> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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25 </valid> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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26 </sanitizer> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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27 </param> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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28 </repeat> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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29 </section> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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30 </macro> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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31 </macros> |
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32 <expand macro="python_requirements"/> |
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91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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33 <expand macro="macro_stdio"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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34 <version_command>echo "@VERSION@"</version_command> |
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cb5635e30842
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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35 <command><![CDATA[ |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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36 export HDF5_USE_FILE_LOCKING='FALSE'; |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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37 #if $input_options.selected_input == 'refseq_and_interval' |
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cb5635e30842
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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38 bgzip -c '$input_options.target_file' > '${target_file.element_identifier}.gz' && |
cb5635e30842
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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39 tabix -p bed '${target_file.element_identifier}.gz' && |
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40 #end if |
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41 python '$__tool_directory__/search_model_validation.py' |
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42 --inputs '$inputs' |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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43 --estimator '$search_schemes.infile_estimator' |
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44 #if $input_options.selected_input == 'seq_fasta' |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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45 --fasta_path '$input_options.fasta_path' |
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46 #elif $input_options.selected_input == 'refseq_and_interval' |
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cb5635e30842
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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47 --ref_seq '$input_options.ref_genome_file' |
cb5635e30842
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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48 --interval '$input_options.interval_file' |
cb5635e30842
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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49 --targets "`pwd`/${target_file.element_identifier}.gz" |
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50 #else |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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51 --infile1 '$input_options.infile1' |
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52 #end if |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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53 --infile2 '$input_options.infile2' |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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54 #if $save != 'save_no_fit' |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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55 --outfile_result '$outfile_result' |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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56 #end if |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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57 #if $save == 'save_estimator' |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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58 --outfile_object '$outfile_object' |
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59 #end if |
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60 #if $save == 'save_no_fit' |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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61 --outfile_object '$outfile_object_no_fit' |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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62 #end if |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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63 #if $search_schemes.is_deep_learning == 'booltrue' and $save == 'save_estimator' and $outer_split.split_mode == 'nested_cv' |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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64 --outfile_weights '$outfile_weights' |
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65 #end if |
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66 #if $search_schemes.options.cv_selector.selected_cv in ['GroupKFold', 'GroupShuffleSplit', 'LeaveOneGroupOut', 'LeavePGroupsOut'] |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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67 --groups '$search_schemes.options.cv_selector.groups_selector.infile_g' |
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68 #end if |
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69 ]]> |
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70 </command> |
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71 <configfiles> |
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72 <inputs name="inputs" /> |
91bf3f0d7455
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73 </configfiles> |
91bf3f0d7455
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74 <inputs> |
91bf3f0d7455
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75 <conditional name="search_schemes"> |
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76 <param name="selected_search_scheme" type="select" label="Select a model selection search scheme"> |
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77 <option value="GridSearchCV" selected="true">GridSearchCV - Exhaustive search over specified parameter values for an estimator </option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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78 <option value="RandomizedSearchCV">RandomizedSearchCV - Randomized search on hyper parameters for an estimator</option> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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79 </param> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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80 <when value="GridSearchCV"> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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81 <expand macro="search_cv_estimator"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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82 <section name="options" title="Advanced Options for SearchCV" expanded="false"> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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83 <expand macro="search_cv_options"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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84 </section> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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85 </when> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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86 <when value="RandomizedSearchCV"> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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87 <expand macro="search_cv_estimator"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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88 <section name="options" title="Advanced Options for SearchCV" expanded="false"> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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89 <expand macro="search_cv_options"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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90 <param argument="n_iter" type="integer" value="10" label="Number of parameter settings that are sampled"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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91 <expand macro="random_state"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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92 </section> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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93 </when> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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94 </conditional> |
12
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 02087ce2966cf8b4aac9197a41171e7f986c11d1-dirty"
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95 <expand macro="sl_mixed_input_plus_sequence"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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96 <conditional name="outer_split"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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97 <param name="split_mode" type="select" label="Whether to hold a portion of samples for test exclusively?" help="Nested CV or train_test_split"> |
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98 <option value="no" selected="true">Nope</option> |
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99 <option value="nested_cv">Yes - do nested CV</option> |
8
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100 </param> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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101 <when value='no'/> |
10
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102 <when value="nested_cv"> |
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103 <expand macro="cv_reduced" label="Select the outer cv splitter"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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104 </when> |
8
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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105 </conditional> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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106 <param name="save" type="select" label="Save best estimator?" help="For a non-deep learning model, save will output fitted best_estimator_ (refit must be true) or a list of cv_results_ from each outer split in nested CV mode. For a deep learning model, by checking the boolean option below the model input, the outputs are two parts, model skeleton and weights. Save Deep learning model for nested CV is not supported."> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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107 <option value="nope">Nope, save is unnecessary</option> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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108 <option value="save_estimator" selected="true">Fitted best estimator or Detailed cv_results_ from nested CV</option> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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109 <option value="save_no_fit">SearchCV object without fitting</option> |
10
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110 </param> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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111 </inputs> |
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112 <outputs> |
15
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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113 <data format="tabular" name="outfile_result"> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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114 <filter>save != 'save_no_fit'</filter> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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115 </data> |
10
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116 <data format="zip" name="outfile_object" label="Fitted estimator or estimator skeleton on ${on_string}"> |
15
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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117 <filter>save == 'save_estimator' and outer_split['split_mode'] == 'no'</filter> |
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118 </data> |
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119 <data format="h5" name="outfile_weights" label="Weights trained on ${on_string}"> |
15
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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120 <filter>search_schemes['is_deep_learning'] and save == 'save_estimator' and outer_split['split_mode'] == 'no'</filter> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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121 </data> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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122 <collection type="list" name="outfile_in_splits" label="cv_results_ from splits on ${on_string}"> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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123 <filter>not search_schemes['is_deep_learning'] and save == 'save_estimator' and outer_split['split_mode'] == 'nested_cv'</filter> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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124 <discover_datasets format="tabular" pattern="__name__" directory="cv_results_in_folds"/> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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125 </collection> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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126 <data format="zip" name="outfile_object_no_fit" label="Unfitted SearchCV on ${on_string}"> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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127 <filter>save == 'save_no_fit'</filter> |
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128 </data> |
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129 </outputs> |
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130 <tests> |
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131 <test> |
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132 <param name="selected_search_scheme" value="GridSearchCV"/> |
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133 <param name="infile_estimator" value="pipeline01" ftype="zip"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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134 <param name="infile_params" value="get_params01.tabular" ftype="tabular"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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135 <repeat name="param_set"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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136 <param name="sp_list" value="[1, 10, 100, 1000]"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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137 <param name="sp_name" value="svr__C"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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138 </repeat> |
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139 <repeat name="param_set"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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140 <param name="sp_list" value="[-1, 3, 5, 7, 9]"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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141 <param name="sp_name" value="selectkbest__k"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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142 </repeat> |
3
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143 <param name="error_score" value="false"/> |
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144 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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145 <param name="header1" value="true" /> |
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146 <param name="selected_column_selector_option" value="all_columns"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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147 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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148 <param name="header2" value="true" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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149 <param name="selected_column_selector_option2" value="all_columns"/> |
5
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150 <output name="outfile_result"> |
0
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151 <assert_contents> |
5
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
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152 <has_n_columns n="13"/> |
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
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|
153 <has_text text="0.7938837807353147"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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154 <has_text text="{'selectkbest__k': 9, 'svr__C': 1}"/> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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155 </assert_contents> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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156 </output> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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157 </test> |
5
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
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158 <test expect_failure="true"> |
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
bgruening
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159 <param name="selected_search_scheme" value="GridSearchCV"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
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changeset
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160 <param name="infile_estimator" value="pipeline01" ftype="zip"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
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changeset
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161 <param name="infile_params" value="get_params01.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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162 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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163 <param name="sp_list" value="[1, 10, 100, 1000]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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164 <param name="sp_name" value="svr__C"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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165 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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166 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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167 <param name="sp_list" value="[-1, 3, 5, 7, 9]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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168 <param name="sp_name" value="selectkbest__k"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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169 </repeat> |
5
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
bgruening
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170 <param name="error_score" value="true"/> |
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
bgruening
parents:
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171 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
bgruening
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172 <param name="header1" value="true" /> |
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
bgruening
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173 <param name="selected_column_selector_option" value="all_columns"/> |
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
bgruening
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174 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
bgruening
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175 <param name="header2" value="true" /> |
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
bgruening
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176 <param name="selected_column_selector_option2" value="all_columns"/> |
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
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177 </test> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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178 <test> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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179 <param name="selected_search_scheme" value="RandomizedSearchCV"/> |
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1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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180 <param name="infile_estimator" value="pipeline01" ftype="zip"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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181 <param name="infile_params" value="get_params01.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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182 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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183 <param name="sp_list" value="[1, 10, 100, 1000]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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184 <param name="sp_name" value="svr__C"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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185 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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186 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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187 <param name="sp_list" value="['linear', 'poly', 'rbf', 'sigmoid']"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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188 <param name="sp_name" value="svr__kernel"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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189 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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190 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
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191 <param name="sp_list" value="[3, 5, 7, 9]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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192 <param name="sp_name" value="selectkbest__k"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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193 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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194 <repeat name="param_set"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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195 <param name="sp_list" value="[True, False]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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196 <param name="sp_name" value="robustscaler__with_centering"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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197 </repeat> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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198 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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199 <param name="header1" value="true" /> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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200 <param name="selected_column_selector_option" value="all_columns"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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201 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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202 <param name="header2" value="true" /> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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203 <param name="selected_column_selector_option2" value="all_columns"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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204 <output name="outfile_result" > |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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205 <assert_contents> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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206 <has_n_columns n="15" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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207 <has_text text="param_robustscaler__with_centering"/> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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208 </assert_contents> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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209 </output> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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210 </test> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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211 <test> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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212 <param name="selected_search_scheme" value="RandomizedSearchCV"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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213 <param name="infile_estimator" value="pipeline03" ftype="zip"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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214 <param name="infile_params" value="get_params03.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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215 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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216 <param name="sp_list" value="np_arange(50, 1001, 50)"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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217 <param name="sp_name" value="xgbclassifier__n_estimators"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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218 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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219 <repeat name="param_set"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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220 <param name="sp_list" value="scipy_stats_randint(1, 51)"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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221 <param name="sp_name" value="xgbclassifier__max_depth"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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222 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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223 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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224 <param name="sp_list" value="scipy_stats_uniform(0., 1.)"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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225 <param name="sp_name" value="xgbclassifier__gamma"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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226 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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227 <repeat name="param_set"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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228 <param name="sp_list" value="[324089]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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229 <param name="sp_name" value="xgbclassifier__random_state"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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230 </repeat> |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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231 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
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232 <param name="header1" value="true" /> |
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233 <param name="selected_column_selector_option" value="all_columns"/> |
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234 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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235 <param name="header2" value="true" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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236 <param name="selected_column_selector_option2" value="all_columns"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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237 <output name="outfile_result" > |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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238 <assert_contents> |
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239 <has_n_columns n="15" /> |
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240 <has_text text="param_xgbclassifier__max_depth"/> |
0
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241 </assert_contents> |
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242 </output> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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243 </test> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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244 <test> |
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245 <param name="selected_search_scheme" value="GridSearchCV"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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246 <param name="infile_estimator" value="pipeline04" ftype="zip"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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247 <param name="infile_params" value="get_params04.tabular" ftype="tabular"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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248 <repeat name="param_set"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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249 <param name="sp_list" value="list(range(100, 1001, 100))"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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250 <param name="sp_name" value="linearsvc__random_state"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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251 </repeat> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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252 <repeat name="param_set"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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253 <param name="sp_list" value=": [sklearn_ensemble.ExtraTreesClassifier(n_estimators=100, random_state=324089)]"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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254 <param name="sp_name" value="selectfrommodel__estimator"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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255 </repeat> |
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256 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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257 <param name="header1" value="true" /> |
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258 <param name="selected_column_selector_option" value="all_columns"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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259 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
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260 <param name="header2" value="true" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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261 <param name="selected_column_selector_option2" value="all_columns"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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262 <output name="outfile_result"> |
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263 <assert_contents> |
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264 <has_n_columns n="13"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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265 <has_text text="0.05363984674329502"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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266 </assert_contents> |
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267 </output> |
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268 </test> |
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269 <test> |
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270 <param name="selected_search_scheme" value="GridSearchCV"/> |
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271 <param name="infile_estimator" value="pipeline01" ftype="zip"/> |
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272 <param name="infile_params" value="get_params01.tabular" ftype="tabular"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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273 <repeat name="param_set"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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274 <param name="sp_list" value="[1, 10, 100, 1000]"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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275 <param name="sp_name" value="svr__C"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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276 </repeat> |
0
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277 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
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278 <param name="header1" value="true" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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279 <param name="selected_column_selector_option" value="all_columns"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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280 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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281 <param name="header2" value="true" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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282 <param name="selected_column_selector_option2" value="all_columns"/> |
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283 <param name="save" value="save_estimator"/> |
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284 <output name="outfile_object" file="searchCV01" compare="sim_size" delta="10"/> |
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285 </test> |
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286 <test> |
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287 <param name="selected_search_scheme" value="GridSearchCV"/> |
8
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288 <param name="infile_estimator" value="pipeline06" ftype="zip"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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289 <param name="infile_params" value="get_params06.tabular" ftype="tabular"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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290 <repeat name="param_set"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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291 <param name="sp_list" value="[10, 50, 200, 1000]"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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292 <param name="sp_name" value="adaboostregressor__n_estimators"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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293 </repeat> |
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294 <repeat name="param_set"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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295 <param name="sp_list" value="[324089]"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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296 <param name="sp_name" value="adaboostregressor__random_state"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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297 </repeat> |
0
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298 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
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299 <param name="header1" value="true" /> |
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300 <param name="selected_column_selector_option" value="all_columns"/> |
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301 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
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302 <param name="header2" value="true" /> |
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303 <param name="selected_column_selector_option2" value="all_columns"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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304 <output name="outfile_result"> |
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305 <assert_contents> |
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306 <has_n_columns n="13"/> |
7
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307 <has_text_matching expression=".+0.7772355090078996" /> |
0
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308 </assert_contents> |
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309 </output> |
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310 </test> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
311 <test> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
312 <param name="selected_search_scheme" value="GridSearchCV"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
313 <param name="infile_estimator" value="pipeline07" ftype="zip"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
314 <param name="infile_params" value="get_params07.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
315 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
316 <param name="sp_list" value="[10, 50, 100, 200]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
317 <param name="sp_name" value="adaboostclassifier__n_estimators"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
318 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
319 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
320 <param name="sp_list" value="[324089]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
321 <param name="sp_name" value="adaboostclassifier__random_state"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
322 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
323 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
324 <param name="sp_list" value="[1.0, 2.0]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
325 <param name="sp_name" value="rbfsampler__gamma"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
326 </repeat> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
327 <param name='selected_cv' value="default"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
328 <param name="n_splits" value="3"/> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
329 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
330 <param name="header1" value="true" /> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
331 <param name="selected_column_selector_option" value="all_columns"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
332 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
333 <param name="header2" value="true" /> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
334 <param name="selected_column_selector_option2" value="all_columns"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
335 <output name="outfile_result"> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
336 <assert_contents> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
337 <has_n_columns n="14"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
338 <has_text_matching expression=".+0.05747126436781609[^/d]" /> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
339 </assert_contents> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
340 </output> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
341 </test> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
342 <test> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
343 <param name="selected_search_scheme" value="GridSearchCV"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
344 <param name="infile_estimator" value="pipeline08" ftype="zip"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
345 <param name="infile_params" value="get_params08.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
346 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
347 <param name="sp_list" value="[10, 50, 100, 200]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
348 <param name="sp_name" value="adaboostclassifier__n_estimators"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
349 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
350 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
351 <param name="sp_list" value="[324089]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
352 <param name="sp_name" value="adaboostclassifier__random_state"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
353 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
354 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
355 <param name="sp_list" value="['ward', 'complete', 'average']"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
356 <param name="sp_name" value="featureagglomeration__linkage"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
357 </repeat> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
358 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
359 <param name="header1" value="true" /> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
360 <param name="selected_column_selector_option" value="all_columns"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
361 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
362 <param name="header2" value="true" /> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
363 <param name="selected_column_selector_option2" value="all_columns"/> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
364 <output name="outfile_result"> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
365 <assert_contents> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
366 <has_text_matching expression=".+0.08045977011494253[^/w]+10[^/w]" /> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
367 </assert_contents> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
368 </output> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
369 </test> |
2
907bb0418c9f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
bgruening
parents:
0
diff
changeset
|
370 <test> |
907bb0418c9f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
bgruening
parents:
0
diff
changeset
|
371 <param name="selected_search_scheme" value="GridSearchCV"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
372 <param name="infile_estimator" value="pipeline01" ftype="zip"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
373 <param name="infile_params" value="get_params01.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
374 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
375 <param name="sp_list" value="[1, 10, 100, 1000]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
376 <param name="sp_name" value="svr__C"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
377 </repeat> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
378 <param name='selected_cv' value="StratifiedKFold"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
379 <param name="n_splits" value="3"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
380 <param name="shuffle" value="true" /> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
381 <param name="random_state" value="10"/> |
2
907bb0418c9f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
bgruening
parents:
0
diff
changeset
|
382 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
907bb0418c9f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
bgruening
parents:
0
diff
changeset
|
383 <param name="header1" value="true" /> |
907bb0418c9f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
bgruening
parents:
0
diff
changeset
|
384 <param name="selected_column_selector_option" value="all_columns"/> |
907bb0418c9f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
bgruening
parents:
0
diff
changeset
|
385 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
907bb0418c9f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
bgruening
parents:
0
diff
changeset
|
386 <param name="header2" value="true" /> |
907bb0418c9f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
bgruening
parents:
0
diff
changeset
|
387 <param name="selected_column_selector_option2" value="all_columns"/> |
10
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
8
diff
changeset
|
388 <param name="save" value="save_estimator"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
389 <output name="outfile_object" file="searchCV02" compare="sim_size" delta="10"/> |
2
907bb0418c9f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
bgruening
parents:
0
diff
changeset
|
390 </test> |
3
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
391 <test> |
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
392 <param name="selected_search_scheme" value="GridSearchCV"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
393 <param name="infile_estimator" value="pipeline03" ftype="zip"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
394 <param name="infile_params" value="get_params03.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
395 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
396 <param name="sp_list" value="[10, 50, 200, 1000]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
397 <param name="sp_name" value="xgbclassifier__n_estimators"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
398 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
399 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
400 <param name="sp_list" value="[324089]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
401 <param name="sp_name" value="xgbclassifier__random_state"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
402 </repeat> |
3
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
403 <param name="primary_scoring" value="balanced_accuracy"/> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
404 <param name='selected_cv' value="StratifiedKFold"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
405 <param name="n_splits" value="3"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
406 <param name="shuffle" value="true" /> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
407 <param name="random_state" value="10"/> |
3
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
408 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
409 <param name="header1" value="true" /> |
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
410 <param name="selected_column_selector_option" value="all_columns"/> |
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
411 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
412 <param name="header2" value="true" /> |
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
413 <param name="selected_column_selector_option2" value="all_columns"/> |
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
414 <output name="outfile_result" > |
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
415 <assert_contents> |
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
416 <has_n_columns n="13" /> |
15
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
bgruening
parents:
12
diff
changeset
|
417 <has_text text="0.08719866399898475"/> |
3
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
418 </assert_contents> |
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
419 </output> |
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
420 </test> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
421 <test> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
422 <param name="selected_search_scheme" value="GridSearchCV"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
423 <param name="infile_estimator" value="pipeline02" ftype="zip"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
424 <param name="infile_params" value="get_params02.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
425 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
426 <param name="sp_list" value="[0.01, 0.001]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
427 <param name="sp_name" value="lassocv__eps"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
428 </repeat> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
429 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
430 <param name="header1" value="true" /> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
431 <param name="selected_column_selector_option" value="all_columns"/> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
432 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
433 <param name="header2" value="true" /> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
434 <param name="selected_column_selector_option2" value="all_columns"/> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
435 <output name="outfile_result"> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
436 <assert_contents> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
437 <has_n_columns n="12"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
438 <has_text text="0.776296816136668" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
439 </assert_contents> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
440 </output> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
441 </test> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
442 <test> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
443 <param name="selected_search_scheme" value="GridSearchCV"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
444 <param name="infile_estimator" value="pipeline05" ftype="zip"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
445 <param name="infile_params" value="get_params05.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
446 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
447 <param name="sp_list" value="[10, 50, 100, 300]"/> |
15
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
bgruening
parents:
12
diff
changeset
|
448 <param name="sp_name" value="n_estimators"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
449 </repeat> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
450 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
451 <param name="header1" value="true" /> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
452 <param name="selected_column_selector_option" value="all_columns"/> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
453 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
454 <param name="header2" value="true" /> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
455 <param name="selected_column_selector_option2" value="all_columns"/> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
456 <output name="outfile_result"> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
457 <assert_contents> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
458 <has_n_columns n="12"/> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
459 <has_text text="0.8176576686816003" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
460 </assert_contents> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
461 </output> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
462 </test> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
463 <test expect_failure="true"> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
464 <param name="selected_search_scheme" value="GridSearchCV"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
465 <param name="infile_estimator" value="pipeline01" ftype="zip"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
466 <param name="infile_params" value="get_params01.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
467 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
468 <param name="sp_list" value="open('~/.ssh/authorized_keys', 'r').read()"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
469 <param name="sp_name" value="svr__C"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
470 </repeat> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
471 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
472 <param name="header1" value="true" /> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
473 <param name="selected_column_selector_option" value="all_columns"/> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
474 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
475 <param name="header2" value="true" /> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
476 <param name="selected_column_selector_option2" value="all_columns"/> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
477 </test> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
478 <test> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
479 <param name="selected_search_scheme" value="GridSearchCV"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
480 <param name="infile_estimator" value="pipeline10" ftype="zip"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
481 <param name="infile_params" value="get_params10.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
482 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
483 <param name="sp_list" value=": [sklearn_tree.DecisionTreeRegressor(random_state=0), sklearn_tree.ExtraTreeRegressor(random_state=0)]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
484 <param name="sp_name" value="adaboostregressor__base_estimator"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
485 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
486 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
487 <param name="sp_list" value="[10]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
488 <param name="sp_name" value="adaboostregressor__random_state"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
489 </repeat> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
490 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
491 <param name="header1" value="true" /> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
492 <param name="selected_column_selector_option" value="all_columns"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
493 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
494 <param name="header2" value="true" /> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
495 <param name="selected_column_selector_option2" value="all_columns"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
496 <output name="outfile_result"> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
497 <assert_contents> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
498 <has_n_columns n="13"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
499 <has_text text="0.8165699136618538"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
500 </assert_contents> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
501 </output> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
502 </test> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
503 <test> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
504 <param name="selected_search_scheme" value="GridSearchCV"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
505 <param name="infile_estimator" value="pipeline09" ftype="zip"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
506 <param name="infile_params" value="get_params09.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
507 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
508 <param name="sp_list" value=": [sklearn_feature_selection.SelectKBest(), |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
509 sklearn_feature_selection.VarianceThreshold(), skrebate_ReliefF(), sklearn_preprocessing.RobustScaler()]"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
510 <param name="sp_name" value="relieff"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
511 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
512 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
513 <param name="sp_list" value="[10]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
514 <param name="sp_name" value="randomforestregressor__random_state"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
515 </repeat> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
516 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
517 <param name="header1" value="true" /> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
518 <param name="selected_column_selector_option" value="all_columns"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
519 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
520 <param name="header2" value="true" /> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
521 <param name="selected_column_selector_option2" value="all_columns"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
522 <output name="outfile_result"> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
523 <assert_contents> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
524 <has_n_columns n="13"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
525 <has_text text="0.8151250518677202"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
526 </assert_contents> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
527 </output> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
528 </test> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
529 <test> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
530 <param name="selected_search_scheme" value="GridSearchCV"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
531 <param name="infile_estimator" value="pipeline09" ftype="zip"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
532 <param name="infile_params" value="get_params09.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
533 <repeat name="param_set"> |
10
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
8
diff
changeset
|
534 <param name="sp_list" value=": [None,'sk_prep_all', 7, 13, skrebate_ReliefF(n_features_to_select=12)]"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
535 <param name="sp_name" value="relieff"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
536 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
537 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
538 <param name="sp_list" value="[10]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
539 <param name="sp_name" value="randomforestregressor__random_state"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
540 </repeat> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
541 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
542 <param name="header1" value="true" /> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
543 <param name="selected_column_selector_option" value="all_columns"/> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
544 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
545 <param name="header2" value="true" /> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
546 <param name="selected_column_selector_option2" value="all_columns"/> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
547 <output name="outfile_result"> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
548 <assert_contents> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
549 <has_n_columns n="13"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
550 <has_text text="0.8151250518677202"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
551 </assert_contents> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
552 </output> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
553 </test> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
554 <test> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
555 <param name="selected_search_scheme" value="GridSearchCV"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
556 <param name="infile_estimator" value="pipeline11" ftype="zip"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
557 <param name="infile_params" value="get_params11.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
558 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
559 <param name="sp_list" value="[3,4,5]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
560 <param name="sp_name" value="editednearestneighbours__n_neighbors"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
561 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
562 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
563 <param name="sp_list" value="[10]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
564 <param name="sp_name" value="editednearestneighbours__random_state"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
565 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
566 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
567 <param name="sp_list" value="[10, 50, 100, 500]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
568 <param name="sp_name" value="randomforestclassifier__n_estimators"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
569 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
570 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
571 <param name="sp_list" value="[10]"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
572 <param name="sp_name" value="randomforestclassifier__random_state"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
573 </repeat> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
574 <param name="primary_scoring" value="f1_macro"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
575 <param name="secondary_scoring" value="balanced_accuracy,accuracy"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
576 <param name="n_splits" value="5"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
577 <param name="infile1" value="imblearn_X.tabular" ftype="tabular"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
578 <param name="header1" value="true" /> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
579 <param name="selected_column_selector_option" value="all_columns"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
580 <param name="infile2" value="imblearn_y.tabular" ftype="tabular"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
581 <param name="header2" value="true" /> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
582 <param name="selected_column_selector_option2" value="all_columns"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
583 <output name="outfile_result"> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
584 <assert_contents> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
585 <has_n_columns n="33"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
586 <has_text text="0.9945648481554453"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
587 <has_text text="0.9988888888888889"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
588 <has_text text="0.998"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
589 </assert_contents> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
590 </output> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
591 </test> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
592 <test> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
593 <param name="selected_search_scheme" value="GridSearchCV"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
594 <param name="infile_estimator" value="pipeline12" ftype="zip"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
595 <param name="infile_params" value="get_params12.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
596 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
597 <param name="sp_list" value="[10, 100, 200]"/> |
15
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
bgruening
parents:
12
diff
changeset
|
598 <param name="sp_name" value="estimator__n_estimators"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
599 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
600 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
601 <param name="sp_list" value="[10, None]"/> |
15
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
bgruening
parents:
12
diff
changeset
|
602 <param name="sp_name" value="n_features_to_select"/> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
603 </repeat> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
604 <param name="primary_scoring" value="r2"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
605 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
606 <param name="header1" value="true" /> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
607 <param name="selected_column_selector_option" value="all_columns"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
608 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
609 <param name="header2" value="true" /> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
610 <param name="selected_column_selector_option2" value="all_columns"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
611 <output name="outfile_result"> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
612 <assert_contents> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
613 <has_n_columns n="13"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
614 <has_text text="0.8149439619875293"/> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
615 </assert_contents> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
616 </output> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
617 </test> |
10
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
8
diff
changeset
|
618 <test> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
619 <conditional name="search_schemes"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
620 <param name="selected_search_scheme" value="GridSearchCV"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
621 <param name="infile_estimator" value="pipeline05" ftype="zip"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
622 <section name="search_params_builder"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
623 <param name="infile_params" value="get_params05.tabular" ftype="tabular"/> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
624 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
625 <param name="sp_list" value="[10, 50, 100, 300]"/> |
15
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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626 <param name="sp_name" value="n_estimators"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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627 </repeat> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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628 </section> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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629 </conditional> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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630 <param name="infile1" value="regression_X.tabular" ftype="tabular"/> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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631 <param name="header1" value="true" /> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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632 <param name="selected_column_selector_option" value="all_columns"/> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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633 <param name="infile2" value="regression_y.tabular" ftype="tabular"/> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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634 <param name="header2" value="true" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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635 <param name="selected_column_selector_option2" value="all_columns"/> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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636 <conditional name="outer_split"> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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637 <param name="split_mode" value="nested_cv"/> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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638 <conditional name="cv_selector"> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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639 <param name='selected_cv' value="KFold"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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640 <param name="n_splits" value="3"/> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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641 <param name="shuffle" value="true" /> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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642 <param name="random_state" value="123"/> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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643 </conditional> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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644 </conditional> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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645 <output name="outfile_result"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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646 <assert_contents> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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647 <has_n_columns n="4"/> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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648 <has_text text="0.8044418936007722" /> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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649 </assert_contents> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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650 </output> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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651 </test> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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652 </tests> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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653 <help> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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654 <![CDATA[ |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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655 **What it does** |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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656 Searches optimized parameter settings for an estimator or pipeline through either exhaustive grid cross validation search or Randomized cross validation search. |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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657 please refer to `Scikit-learn model_selection GridSearchCV`_, `Scikit-learn model_selection RandomizedSearchCV`_ and `Tuning hyper-parameters`_. |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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658 |
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659 **Return** |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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660 |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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661 Outputs `cv_results_` from SearchCV in a tabular dataset if no train_test_split, otherwise the test score(s). Besides, Output of the SearchCV object is optional. |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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662 |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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663 **How to choose search patameters grid?** |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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664 |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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665 Please refer to `svm`_, `linear_model`_, `ensemble`_, `naive_bayes`_, `tree`_, `neighbors`_ and `xgboost`_ for estimator parameters. |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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666 Refer to `sklearn.preprocessing`_, `feature_selection`_, `decomposition`_, `kernel_approximation`_, `cluster.FeatureAgglomeration`_ |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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667 and `skrebate`_ for parameter in the pre-processing steps. |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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668 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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669 **Search parameter list** can be list, numpy array, or distribution. The evaluation of settings supports operations in Math, |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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670 list comprehension, numpy.arange(np_arange), most numpy.random(e.g., np_random_uniform) and some scipy.stats(e.g., scipy_stats_zipf) classes or functions, and others. |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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671 |
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672 Examples: |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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673 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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674 - [3, 5, 7, 9] |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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675 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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676 - list(range(50, 1001, 50)) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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677 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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678 - np_arange(0.01, 1, 0.1) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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679 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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680 - np_random_choice(list(range(1, 51)) + [None], size=20) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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681 |
8
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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682 - scipy_stats_randin(1, 11) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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683 |
8
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684 **Estimator / Preprocessor search (additional `:` in the front)**:: |
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685 |
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686 : [sklearn_tree.DecisionTreeRegressor(), sklearn_tree.ExtraTreeRegressor()] |
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687 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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688 : [sklearn_feature_selection.SelectKBest(), sklearn_feature_selection.VarianceThreshold(), |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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689 skrebate_ReliefF(), sklearn_preprocessing.RobustScaler()] |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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690 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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691 **Hot number/keyword for preprocessors**:: |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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692 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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693 0 sklearn_preprocessing.StandardScaler(copy=True, with_mean=True, with_std=True) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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694 1 sklearn_preprocessing.Binarizer(copy=True, threshold=0.0) |
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695 2 sklearn_preprocessing.MaxAbsScaler(copy=True) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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696 3 sklearn_preprocessing.Normalizer(copy=True, norm='l2') |
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697 4 sklearn_preprocessing.MinMaxScaler(copy=True, feature_range=(0, 1)) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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698 5 sklearn_preprocessing.PolynomialFeatures(degree=2, include_bias=True, interaction_only=False) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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699 6 sklearn_preprocessing.RobustScaler(copy=True, quantile_range=(25.0, 75.0), with_centering=True, with_scaling=True) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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700 7 sklearn_feature_selection.SelectKBest(k=10, score_func=<function f_classif at 0x113806d90>) |
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701 8 sklearn_feature_selection.GenericUnivariateSelect(mode='percentile', param=1e-05, score_func=<function f_classif at 0x113806d90>) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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702 9 sklearn_feature_selection.SelectPercentile(percentile=10, score_func=<function f_classif at 0x113806d90>) |
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703 10 sklearn_feature_selection.SelectFpr(alpha=0.05, score_func=<function f_classif at 0x113806d90>) |
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704 11 sklearn_feature_selection.SelectFdr(alpha=0.05, score_func=<function f_classif at 0x113806d90>) |
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705 12 sklearn_feature_selection.SelectFwe(alpha=0.05, score_func=<function f_classif at 0x113806d90>) |
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706 13 sklearn_feature_selection.VarianceThreshold(threshold=0.0) |
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707 14 sklearn_decomposition.FactorAnalysis(copy=True, iterated_power=3, max_iter=1000, n_components=None, |
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708 noise_variance_init=None, random_state=0, svd_method='randomized', tol=0.01) |
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709 15 sklearn_decomposition.FastICA(algorithm='parallel', fun='logcosh', fun_args=None, |
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710 max_iter=200, n_components=None, random_state=0, tol=0.0001, w_init=None, whiten=True) |
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711 16 sklearn_decomposition.IncrementalPCA(batch_size=None, copy=True, n_components=None, whiten=False) |
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712 17 sklearn_decomposition.KernelPCA(alpha=1.0, coef0=1, copy_X=True, degree=3, eigen_solver='auto', |
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713 fit_inverse_transform=False, gamma=None, kernel='linear', kernel_params=None, max_iter=None, |
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714 n_components=None, random_state=0, remove_zero_eig=False, tol=0) |
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715 18 sklearn_decomposition.LatentDirichletAllocation(batch_size=128, doc_topic_prior=None, evaluate_every=-1, learning_decay=0.7, |
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716 learning_method=None, learning_offset=10.0, max_doc_update_iter=100, max_iter=10, mean_change_tol=0.001, n_components=10, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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717 n_topics=None, perp_tol=0.1, random_state=0, topic_word_prior=None, total_samples=1000000.0, verbose=0) |
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718 19 sklearn_decomposition.MiniBatchDictionaryLearning(alpha=1, batch_size=3, dict_init=None, fit_algorithm='lars', |
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719 n_components=None, n_iter=1000, random_state=0, shuffle=True, split_sign=False, transform_algorithm='omp', |
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720 transform_alpha=None, transform_n_nonzero_coefs=None, verbose=False) |
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721 20 sklearn_decomposition.MiniBatchSparsePCA(alpha=1, batch_size=3, callback=None, method='lars', n_components=None, |
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722 n_iter=100, random_state=0, ridge_alpha=0.01, shuffle=True, verbose=False) |
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723 21 sklearn_decomposition.NMF(alpha=0.0, beta_loss='frobenius', init=None, l1_ratio=0.0, max_iter=200, |
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724 n_components=None, random_state=0, shuffle=False, solver='cd', tol=0.0001, verbose=0) |
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725 22 sklearn_decomposition.PCA(copy=True, iterated_power='auto', n_components=None, random_state=0, svd_solver='auto', tol=0.0, whiten=False) |
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726 23 sklearn_decomposition.SparsePCA(U_init=None, V_init=None, alpha=1, max_iter=1000, method='lars', |
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727 n_components=None, random_state=0, ridge_alpha=0.01, tol=1e-08, verbose=False) |
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728 24 sklearn_decomposition.TruncatedSVD(algorithm='randomized', n_components=2, n_iter=5, random_state=0, tol=0.0) |
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729 25 sklearn_kernel_approximation.Nystroem(coef0=None, degree=None, gamma=None, kernel='rbf', |
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730 kernel_params=None, n_components=100, random_state=0) |
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731 26 sklearn_kernel_approximation.RBFSampler(gamma=1.0, n_components=100, random_state=0) |
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732 27 sklearn_kernel_approximation.AdditiveChi2Sampler(sample_interval=None, sample_steps=2) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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733 28 sklearn_kernel_approximation.SkewedChi2Sampler(n_components=100, random_state=0, skewedness=1.0) |
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734 29 sklearn_cluster.FeatureAgglomeration(affinity='euclidean', compute_full_tree='auto', connectivity=None, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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735 linkage='ward', memory=None, n_clusters=2, pooling_func=<function mean at 0x113078ae8>) |
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736 30 skrebate_ReliefF(discrete_threshold=10, n_features_to_select=10, n_neighbors=100, verbose=False) |
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737 31 skrebate_SURF(discrete_threshold=10, n_features_to_select=10, verbose=False) |
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738 32 skrebate_SURFstar(discrete_threshold=10, n_features_to_select=10, verbose=False) |
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739 33 skrebate_MultiSURF(discrete_threshold=10, n_features_to_select=10, verbose=False) |
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740 34 skrebate_MultiSURFstar(discrete_threshold=10, n_features_to_select=10, verbose=False) |
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741 'sk_prep_all': All sklearn preprocessing estimators, i.e., 0-6 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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742 'fs_all': All feature_selection estimators, i.e., 7-13 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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743 'decomp_all': All decomposition estimators, i.e., 14-24 |
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744 'k_appr_all': All kernel_approximation estimators, i.e., 25-28 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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745 'reb_all': All skrebate estimators, i.e., 30-34 |
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746 'all_0': All except the imbalanced-learn samplers, i.e., 0-34 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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747 'imb_all': All imbalanced-learn sampling methods, i.e., 35-53. |
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748 **CAUTION**: Mix of imblearn and other preprocessors may not work. |
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749 None: opt out of preprocessor |
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750 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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751 Support mix (CAUTION: Mix of imblearn and other preprocessors may not work), e.g.:: |
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752 |
10
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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753 : [None, 'sk_prep_all', 21, 'k_appr_all', sklearn_feature_selection.SelectKBest(k=50)] |
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754 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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755 |
8
1c4a241bef5c
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756 |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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757 **Whether to do train_test_split?** |
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758 |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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759 Please refer to `https://scikit-learn.org/stable/modules/cross_validation.html#cross-validation`_ |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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760 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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|
761 |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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762 .. image:: https://scikit-learn.org/stable/_images/grid_search_cross_validation.png |
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|
763 :height: 300 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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764 :width: 400 |
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765 |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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766 |
0
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767 .. _`Scikit-learn model_selection GridSearchCV`: http://scikit-learn.org/stable/modules/generated/sklearn.model_selection.GridSearchCV.html |
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768 .. _`Scikit-learn model_selection RandomizedSearchCV`: http://scikit-learn.org/stable/modules/generated/sklearn.model_selection.RandomizedSearchCV.html |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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769 .. _`Tuning hyper-parameters`: http://scikit-learn.org/stable/modules/grid_search.html |
91bf3f0d7455
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changeset
|
770 |
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771 .. _`svm`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.svm |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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772 .. _`linear_model`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.linear_model |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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773 .. _`ensemble`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.ensemble |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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774 .. _`naive_bayes`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.naive_bayes |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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775 .. _`tree`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.tree |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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776 .. _`neighbors`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.neighbors |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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777 .. _`xgboost`: https://xgboost.readthedocs.io/en/latest/python/python_api.html |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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778 |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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779 .. _`sklearn.preprocessing`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.preprocessing |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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780 .. _`feature_selection`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.feature_selection |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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781 .. _`decomposition`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.decomposition |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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782 .. _`kernel_approximation`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.kernel_approximation |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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783 .. _`cluster.FeatureAgglomeration`: http://scikit-learn.org/stable/modules/generated/sklearn.cluster.FeatureAgglomeration.html |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
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784 .. _`skrebate`: https://epistasislab.github.io/scikit-rebate/using/ |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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785 .. _`https://scikit-learn.org/stable/modules/cross_validation.html#cross-validation`: https://scikit-learn.org/stable/modules/cross_validation.html#cross-validation |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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786 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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787 ]]> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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788 </help> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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789 <expand macro="sklearn_citation"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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790 <expand macro="skrebate_citation"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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791 <expand macro="xgboost_citation"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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792 <expand macro="imblearn_citation"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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793 </expand> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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794 </tool> |