Mercurial > repos > bgruening > sklearn_searchcv
annotate search_model_validation.xml @ 30:7626ea9c2e1b draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author | bgruening |
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date | Sun, 05 Nov 2023 15:45:51 +0000 |
parents | fc99237f3392 |
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fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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1 <tool id="sklearn_searchcv" name="Hyperparameter Search" version="@VERSION@" profile="@PROFILE@"> |
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c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
bgruening
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2 <description>performs hyperparameter optimization using various SearchCVs</description> |
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91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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3 <macros> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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4 <import>main_macros.xml</import> |
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fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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5 <macro name="search_cv_estimator"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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6 <param name="infile_estimator" type="data" format="h5mlm" label="Choose the dataset containing pipeline/estimator object" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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7 <param name="is_deep_learning" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="Is the estimator a deep learning model?" /> |
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c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
bgruening
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8 <section name="search_params_builder" title="Search parameters Builder" expanded="true"> |
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fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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9 <repeat name="param_set" min="1" max="30" title="Parameter settings for search:"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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10 <param name="sp_name" type="select" optional="true" label="Choose a parameter name (with current value)"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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11 <options from_dataset="infile_estimator" meta_file_key="hyper_params" startswith="@"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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12 <column name="name" index="2" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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13 <column name="value" index="1" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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14 <filter type="unique_value" name="unique_param" column="1" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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15 </options> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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16 </param> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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17 <param name="sp_list" type="text" value="" optional="true" label="Search list" help="list or array-like, for example: [1, 10, 100, 1000], [True, False] and ['auto', 'sqrt', None]. See `help` section for more examples"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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18 <sanitizer> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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19 <valid initial="default"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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20 <add value="'" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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21 <add value=""" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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22 <add value="[" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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23 <add value="]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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24 </valid> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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25 </sanitizer> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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26 </param> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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27 </repeat> |
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c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
bgruening
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28 </section> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
bgruening
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29 </macro> |
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91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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30 </macros> |
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fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents:
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31 <expand macro="python_requirements" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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32 <expand macro="macro_stdio" /> |
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91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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33 <version_command>echo "@VERSION@"</version_command> |
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fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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34 <command> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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35 <![CDATA[ |
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82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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36 export HDF5_USE_FILE_LOCKING='FALSE'; |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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37 #if $input_options.selected_input == 'refseq_and_interval' |
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fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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38 bgzip -c '$input_options.target_file' > '${target_file.element_identifier}.gz' && |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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39 tabix -p bed '${target_file.element_identifier}.gz' && |
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82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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40 #end if |
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4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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41 python '$__tool_directory__/search_model_validation.py' |
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1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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42 --inputs '$inputs' |
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fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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43 --estimator '$infile_estimator' |
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82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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44 #if $input_options.selected_input == 'seq_fasta' |
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fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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45 --fasta_path '$input_options.fasta_path' |
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82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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46 #elif $input_options.selected_input == 'refseq_and_interval' |
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fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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47 --ref_seq '$input_options.ref_genome_file' |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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48 --interval '$input_options.interval_file' |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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49 --targets "`pwd`/${target_file.element_identifier}.gz" |
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82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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50 #else |
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fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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51 --infile1 '$input_options.infile1' |
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82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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52 #end if |
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fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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53 --infile2 '$input_options.infile2' |
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c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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54 #if $save != 'save_no_fit' |
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fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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55 --outfile_result '$outfile_result' |
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c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
bgruening
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56 #end if |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
bgruening
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57 #if $save == 'save_estimator' |
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fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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58 --outfile_object '$outfile_object' |
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4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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59 #end if |
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c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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60 #if $save == 'save_no_fit' |
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fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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61 --outfile_object '$outfile_object_no_fit' |
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82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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62 #end if |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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63 #if $options.cv_selector.selected_cv in ['GroupKFold', 'GroupShuffleSplit', 'LeaveOneGroupOut', 'LeavePGroupsOut'] |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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64 --groups '$options.cv_selector.groups_selector.infile_g' |
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1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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65 #end if |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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66 |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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67 ]]> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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68 </command> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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69 <configfiles> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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70 <inputs name="inputs" /> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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71 </configfiles> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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72 <inputs> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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73 <conditional name="search_algos"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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74 <param name="selected_search_algo" type="select" label="Select a hyperparameter search algorithm"> |
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91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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75 <option value="GridSearchCV" selected="true">GridSearchCV - Exhaustive search over specified parameter values for an estimator </option> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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76 <option value="RandomizedSearchCV">RandomizedSearchCV - Randomized search on hyper parameters for an estimator</option> |
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fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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77 <option value="skopt.BayesSearchCV">BayesSearchCV - Bayesian optimization over hyper parameters</option> |
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91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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78 </param> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
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79 <when value="GridSearchCV"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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80 </when> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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81 <when value="RandomizedSearchCV"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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82 <param argument="n_iter" type="integer" value="10" label="Number of parameter settings that are sampled" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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83 <expand macro="random_state" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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84 </when> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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85 <when value="skopt.BayesSearchCV"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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86 <param argument="optimizer_kwargs" type="text" value="" optional="true" help="dict, optional Dict of arguments passed to :class:Optimizer. For example, {'base_estimator': 'RF'} would use a Random Forest surrogate instead of the default Gaussian Process."> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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87 <sanitizer> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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88 <valid initial="default"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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89 <add value="{" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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90 <add value="}" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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91 </valid> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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92 </sanitizer> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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93 </param> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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94 <param argument="n_iter" type="integer" value="50" label="Number of parameter settings that are sampled" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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95 <param argument="n_points" type="integer" value="1" label="Number of parameter settings to sample in parallel" help="Maximum parallel equals n_points times cv jobs." /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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96 <expand macro="random_state" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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97 </when> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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98 </conditional> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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99 <expand macro="search_cv_estimator" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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100 <section name="options" title="Advanced Options for SearchCV" expanded="false"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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101 <expand macro="search_cv_options" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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102 </section> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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103 <expand macro="sl_mixed_input_plus_sequence" /> |
10
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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104 <conditional name="outer_split"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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105 <param name="split_mode" type="select" label="Whether to hold a portion of samples for test exclusively, nested CV?"> |
10
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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106 <option value="no" selected="true">Nope</option> |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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107 <option value="nested_cv">Yes - do nested CV</option> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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108 </param> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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109 <when value='no' /> |
10
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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110 <when value="nested_cv"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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111 <expand macro="cv_reduced" label="Select the outer cv splitter" /> |
10
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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112 </when> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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113 </conditional> |
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114 <param name="save" type="select" label="Save best estimator?" help="For a non-deep learning model, save will output fitted best_estimator_ or a list of cv_results_ from each outer split if in nested CV mode. For a deep learning model, by checking the boolean option below the model input, the outputs are two parts, model skeleton and weights. Save Deep learning model for nested CV is not supported."> |
15
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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115 <option value="nope">Nope, save is unnecessary</option> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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116 <option value="save_estimator" selected="true">Fitted best estimator or Detailed cv_results_ from nested CV</option> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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117 <option value="save_no_fit">SearchCV object without fitting</option> |
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118 </param> |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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119 </inputs> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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120 <outputs> |
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c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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121 <data format="tabular" name="outfile_result"> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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122 <filter>save != 'save_no_fit'</filter> |
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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123 </data> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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124 <data format="h5mlm" name="outfile_object" label="Fitted best estimator on ${on_string}"> |
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c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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125 <filter>save == 'save_estimator' and outer_split['split_mode'] == 'no'</filter> |
10
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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126 </data> |
15
c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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127 <collection type="list" name="outfile_in_splits" label="cv_results_ from splits on ${on_string}"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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128 <filter>not is_deep_learning and save == 'save_estimator' and outer_split['split_mode'] == 'nested_cv'</filter> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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129 <discover_datasets format="tabular" pattern="__name__" directory="cv_results_in_folds" /> |
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c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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130 </collection> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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131 <data format="h5mlm" name="outfile_object_no_fit" label="Unfitted SearchCV on ${on_string}"> |
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c1ca24a1509d
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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132 <filter>save == 'save_no_fit'</filter> |
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91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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133 </data> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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134 </outputs> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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135 <tests> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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136 <test> |
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137 <param name="selected_search_algo" value="GridSearchCV" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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138 <param name="infile_estimator" value="pipeline01" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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139 <repeat name="param_set"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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140 <param name="sp_list" value="[1, 10, 100, 1000]" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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141 <param name="sp_name" value="svr__C" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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142 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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143 <repeat name="param_set"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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144 <param name="sp_list" value="['all', 3, 5, 7, 9]" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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145 <param name="sp_name" value="selectkbest__k" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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146 </repeat> |
25
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147 <param name="error_score" value="false" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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148 <param name="n_splits" value="3" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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149 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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150 <param name="header1" value="true" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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151 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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152 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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153 <param name="header2" value="true" /> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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154 <param name="selected_column_selector_option2" value="all_columns" /> |
5
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
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155 <output name="outfile_result"> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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156 <assert_contents> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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157 <has_n_columns n="13" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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158 <has_text text="0.7938837807" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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159 <has_text text="{'selectkbest__k': 9, 'svr__C': 1}" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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160 </assert_contents> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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changeset
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161 </output> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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162 </test> |
5
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
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163 <test expect_failure="true"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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164 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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165 <param name="infile_estimator" value="pipeline01" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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166 <repeat name="param_set"> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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167 <param name="sp_list" value="[1, 10, 100, 1000]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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168 <param name="sp_name" value="svr__C" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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169 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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170 <repeat name="param_set"> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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171 <param name="sp_list" value="[-1, 3, 5, 7, 9]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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172 <param name="sp_name" value="selectkbest__k" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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173 </repeat> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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174 <param name="error_score" value="true" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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changeset
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175 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
5
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
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176 <param name="header1" value="true" /> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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177 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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178 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
5
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
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179 <param name="header2" value="true" /> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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180 <param name="selected_column_selector_option2" value="all_columns" /> |
5
0987bc3904a0
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1
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181 </test> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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182 <test> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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183 <param name="selected_search_algo" value="RandomizedSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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184 <param name="infile_estimator" value="pipeline01" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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185 <repeat name="param_set"> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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186 <param name="sp_list" value="[1, 10, 100, 1000]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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187 <param name="sp_name" value="svr__C" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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188 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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189 <repeat name="param_set"> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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190 <param name="sp_list" value="['linear', 'poly', 'rbf', 'sigmoid']" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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191 <param name="sp_name" value="svr__kernel" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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192 </repeat> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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193 <repeat name="param_set"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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194 <param name="sp_list" value="[3, 5, 7, 9]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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195 <param name="sp_name" value="selectkbest__k" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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196 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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197 <repeat name="param_set"> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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198 <param name="sp_list" value="[True, False]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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199 <param name="sp_name" value="robustscaler__with_centering" /> |
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1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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200 </repeat> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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201 <section name="options"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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202 <conditional name="cv_selector"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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203 <param name="selected_cv" value="default" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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204 <param name="n_splits" value="3" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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205 </conditional> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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206 </section> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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207 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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208 <param name="header1" value="true" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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209 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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210 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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211 <param name="header2" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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212 <param name="selected_column_selector_option2" value="all_columns" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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213 <output name="outfile_result" > |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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214 <assert_contents> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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215 <has_n_columns n="15" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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216 <has_text text="param_robustscaler__with_centering" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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217 </assert_contents> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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218 </output> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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219 </test> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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220 <test> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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221 <param name="selected_search_algo" value="RandomizedSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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222 <param name="infile_estimator" value="pipeline03" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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223 <repeat name="param_set"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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224 <param name="sp_list" value="np_arange(50, 1001, 50)" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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225 <param name="sp_name" value="xgbclassifier__n_estimators" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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226 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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227 <repeat name="param_set"> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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228 <param name="sp_list" value="scipy_stats_randint(1, 51)" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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229 <param name="sp_name" value="xgbclassifier__max_depth" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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230 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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231 <repeat name="param_set"> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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232 <param name="sp_list" value="scipy_stats_uniform(0., 1.)" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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233 <param name="sp_name" value="xgbclassifier__gamma" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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234 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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235 <repeat name="param_set"> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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236 <param name="sp_list" value="[324089]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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237 <param name="sp_name" value="xgbclassifier__random_state" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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238 </repeat> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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239 <param name="n_splits" value="3" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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240 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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241 <param name="header1" value="true" /> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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242 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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243 <param name="infile2" value="classifier_y.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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244 <param name="header2" value="true" /> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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245 <param name="selected_column_selector_option2" value="all_columns" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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246 <output name="outfile_result" > |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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247 <assert_contents> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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248 <has_n_columns n="15" /> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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249 <has_text text="param_xgbclassifier__max_depth" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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250 </assert_contents> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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251 </output> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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252 </test> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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253 <test> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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254 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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255 <param name="infile_estimator" value="pipeline04" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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256 <repeat name="param_set"> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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257 <param name="sp_list" value="list(range(100, 1001, 100))" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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258 <param name="sp_name" value="linearsvc__random_state" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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259 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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260 <repeat name="param_set"> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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261 <param name="sp_list" value=": [sklearn_ensemble.ExtraTreesClassifier(n_estimators=100, random_state=324089)]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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262 <param name="sp_name" value="selectfrommodel__estimator" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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263 </repeat> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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264 <param name="n_splits" value="3" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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265 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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266 <param name="header1" value="true" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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267 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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268 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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269 <param name="header2" value="true" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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270 <param name="selected_column_selector_option2" value="all_columns" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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271 <output name="outfile_result"> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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272 <assert_contents> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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273 <has_n_columns n="13" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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274 <has_text text="0.05363984674329502" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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275 </assert_contents> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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276 </output> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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277 </test> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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278 <test> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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279 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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280 <param name="infile_estimator" value="pipeline01" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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281 <repeat name="param_set"> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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282 <param name="sp_list" value="[1, 10, 100, 1000]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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283 <param name="sp_name" value="svr__C" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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284 </repeat> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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285 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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286 <param name="header1" value="true" /> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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287 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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288 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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289 <param name="header2" value="true" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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290 <param name="selected_column_selector_option2" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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291 <param name="save" value="save_estimator" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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292 <output name="outfile_object" file="searchCV01" compare="sim_size" delta="10" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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293 </test> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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294 <test> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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295 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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296 <param name="infile_estimator" value="pipeline06" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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297 <repeat name="param_set"> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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298 <param name="sp_list" value="[10, 50, 200, 1000]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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299 <param name="sp_name" value="adaboostregressor__n_estimators" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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300 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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301 <repeat name="param_set"> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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302 <param name="sp_list" value="[324089]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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303 <param name="sp_name" value="adaboostregressor__random_state" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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304 </repeat> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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305 <param name="n_splits" value="3" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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306 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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307 <param name="header1" value="true" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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308 <param name="selected_column_selector_option" value="all_columns" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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309 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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310 <param name="header2" value="true" /> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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311 <param name="selected_column_selector_option2" value="all_columns" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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312 <output name="outfile_result"> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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313 <assert_contents> |
25
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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314 <has_n_columns n="13" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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315 <has_text_matching expression=".+0.7772355090078996" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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316 </assert_contents> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
317 </output> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
318 </test> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
319 <test> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
320 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
321 <param name="infile_estimator" value="pipeline07" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
322 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
323 <param name="sp_list" value="[10, 50, 100, 200]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
324 <param name="sp_name" value="adaboostclassifier__n_estimators" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
325 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
326 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
327 <param name="sp_list" value="[324089]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
328 <param name="sp_name" value="adaboostclassifier__random_state" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
329 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
330 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
331 <param name="sp_list" value="[1.0, 2.0]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
332 <param name="sp_name" value="rbfsampler__gamma" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
333 </repeat> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
334 <param name='selected_cv' value="default" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
335 <param name="n_splits" value="3" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
336 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
337 <param name="header1" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
338 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
339 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
340 <param name="header2" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
341 <param name="selected_column_selector_option2" value="all_columns" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
342 <output name="outfile_result"> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
343 <assert_contents> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
344 <has_n_columns n="14" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
345 <has_text_matching expression=".+0.05747126436781609[^/d]" /> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
346 </assert_contents> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
347 </output> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
348 </test> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
349 <test> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
350 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
351 <param name="infile_estimator" value="pipeline08" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
352 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
353 <param name="sp_list" value="[10, 50, 100, 200]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
354 <param name="sp_name" value="adaboostclassifier__n_estimators" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
355 </repeat> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
356 <repeat name="param_set"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
357 <param name="sp_list" value="[324089]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
358 <param name="sp_name" value="adaboostclassifier__random_state" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
359 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
360 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
361 <param name="sp_list" value="['ward', 'complete', 'average']" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
362 <param name="sp_name" value="featureagglomeration__linkage" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
363 </repeat> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
364 <param name="n_splits" value="3" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
365 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
366 <param name="header1" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
367 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
368 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
369 <param name="header2" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
370 <param name="selected_column_selector_option2" value="all_columns" /> |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
371 <output name="outfile_result"> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
372 <assert_contents> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
373 <has_text_matching expression=".+0.08045977011494253[^/w]+10[^/w]" /> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
374 </assert_contents> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
375 </output> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
diff
changeset
|
376 </test> |
2
907bb0418c9f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
bgruening
parents:
0
diff
changeset
|
377 <test> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
378 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
379 <param name="infile_estimator" value="pipeline01" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
380 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
381 <param name="sp_list" value="[1, 10, 100, 1000]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
382 <param name="sp_name" value="svr__C" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
383 </repeat> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
384 <param name='selected_cv' value="StratifiedKFold" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
385 <param name="n_splits" value="3" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
386 <param name="shuffle" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
387 <param name="random_state" value="10" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
388 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
2
907bb0418c9f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
bgruening
parents:
0
diff
changeset
|
389 <param name="header1" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
390 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
391 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
2
907bb0418c9f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
bgruening
parents:
0
diff
changeset
|
392 <param name="header2" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
393 <param name="selected_column_selector_option2" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
394 <param name="save" value="save_estimator" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
395 <output name="outfile_object" file="searchCV02" compare="sim_size" delta="10" /> |
2
907bb0418c9f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit b1e5fa3170484d2cc3396f2abe99bb8cfcfa9c65
bgruening
parents:
0
diff
changeset
|
396 </test> |
3
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
397 <test> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
398 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
399 <param name="infile_estimator" value="pipeline03" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
400 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
401 <param name="sp_list" value="[10, 50, 200, 1000]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
402 <param name="sp_name" value="xgbclassifier__n_estimators" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
403 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
404 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
405 <param name="sp_list" value="[324089]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
406 <param name="sp_name" value="xgbclassifier__random_state" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
407 </repeat> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
408 <param name="primary_scoring" value="balanced_accuracy" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
409 <param name='selected_cv' value="StratifiedKFold" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
410 <param name="n_splits" value="3" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
411 <param name="shuffle" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
412 <param name="random_state" value="10" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
413 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
3
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
414 <param name="header1" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
415 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
416 <param name="infile2" value="classifier_y.tabular" ftype="tabular" /> |
3
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
417 <param name="header2" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
418 <param name="selected_column_selector_option2" value="all_columns" /> |
3
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
419 <output name="outfile_result" > |
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
420 <assert_contents> |
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
421 <has_n_columns n="13" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
422 <has_text text="0.7927378" /> |
3
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
423 </assert_contents> |
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
424 </output> |
f9fea8323bcb
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
bgruening
parents:
2
diff
changeset
|
425 </test> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
426 <test> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
427 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
428 <param name="infile_estimator" value="pipeline02" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
429 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
430 <param name="sp_list" value="[0.01, 0.001]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
431 <param name="sp_name" value="lassocv__eps" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
432 </repeat> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
433 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
434 <param name="header1" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
435 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
436 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
437 <param name="header2" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
438 <param name="selected_column_selector_option2" value="all_columns" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
439 <output name="outfile_result"> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
440 <assert_contents> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
441 <has_n_columns n="14" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
442 <has_text text="0.78685093734485" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
443 </assert_contents> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
444 </output> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
445 </test> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
446 <test> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
447 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
448 <param name="infile_estimator" value="pipeline05" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
449 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
450 <param name="sp_list" value="[10, 50, 100]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
451 <param name="sp_name" value="n_estimators" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
452 </repeat> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
453 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
454 <param name="header1" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
455 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
456 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
457 <param name="header2" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
458 <param name="selected_column_selector_option2" value="all_columns" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
459 <output name="outfile_result"> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
460 <assert_contents> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
461 <has_n_columns n="14" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
462 <has_text text="0.8101624993383203" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
463 </assert_contents> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
464 </output> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
465 <output name="outfile_object" file="searchCV03" compare="sim_size" delta="10" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
466 </test> |
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
467 <test expect_failure="true"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
468 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
469 <param name="infile_estimator" value="pipeline01" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
470 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
471 <param name="sp_list" value="open('~/.ssh/authorized_keys', 'r').read()" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
472 <param name="sp_name" value="svr__C" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
473 </repeat> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
474 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
475 <param name="header1" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
476 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
477 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
478 <param name="header2" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
479 <param name="selected_column_selector_option2" value="all_columns" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
480 </test> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
481 <test> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
482 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
483 <param name="infile_estimator" value="pipeline10" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
484 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
485 <param name="sp_list" value=": [sklearn_tree.DecisionTreeRegressor(random_state=0), sklearn_tree.ExtraTreeRegressor(random_state=0)]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
486 <param name="sp_name" value="adaboostregressor__base_estimator" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
487 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
488 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
489 <param name="sp_list" value="[10]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
490 <param name="sp_name" value="adaboostregressor__random_state" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
491 </repeat> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
492 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
493 <param name="header1" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
494 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
495 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
496 <param name="header2" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
497 <param name="selected_column_selector_option2" value="all_columns" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
498 <output name="outfile_result"> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
499 <assert_contents> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
500 <has_n_columns n="15" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
501 <has_text text="0.7981150937087843" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
502 </assert_contents> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
503 </output> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
504 </test> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
505 <test> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
506 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
507 <param name="infile_estimator" value="pipeline09" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
508 <repeat name="param_set"> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
509 <param name="sp_list" value=": [sklearn_feature_selection.SelectKBest(), |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
510 sklearn_feature_selection.VarianceThreshold(), skrebate_ReliefF(), sklearn_preprocessing.RobustScaler()]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
511 <param name="sp_name" value="relieff" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
512 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
513 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
514 <param name="sp_list" value="[10]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
515 <param name="sp_name" value="randomforestregressor__random_state" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
516 </repeat> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
517 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
518 <param name="header1" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
519 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
520 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
521 <param name="header2" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
522 <param name="selected_column_selector_option2" value="all_columns" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
523 <output name="outfile_result"> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
524 <assert_contents> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
525 <has_n_columns n="15" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
526 <has_text text="0.8136054873316014" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
527 </assert_contents> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
528 </output> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
529 </test> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
530 <test> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
531 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
532 <param name="infile_estimator" value="pipeline09" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
533 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
534 <param name="sp_list" value=": [None,'sk_prep_all', 7, 13, skrebate_ReliefF(n_features_to_select=12)]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
535 <param name="sp_name" value="relieff" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
536 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
537 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
538 <param name="sp_list" value="[10]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
539 <param name="sp_name" value="randomforestregressor__random_state" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
540 </repeat> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
541 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
542 <param name="header1" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
543 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
544 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
545 <param name="header2" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
546 <param name="selected_column_selector_option2" value="all_columns" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
547 <output name="outfile_result"> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
548 <assert_contents> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
549 <has_n_columns n="15" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
550 <has_text text="0.8137203241980131" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
551 </assert_contents> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
552 </output> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
553 </test> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
554 <test> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
555 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
556 <param name="infile_estimator" value="pipeline11" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
557 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
558 <param name="sp_list" value="[3,4,5]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
559 <param name="sp_name" value="editednearestneighbours__n_neighbors" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
560 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
561 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
562 <param name="sp_list" value="[10, 50, 100, 500]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
563 <param name="sp_name" value="randomforestclassifier__n_estimators" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
564 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
565 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
566 <param name="sp_list" value="[10]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
567 <param name="sp_name" value="randomforestclassifier__random_state" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
568 </repeat> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
569 <param name="primary_scoring" value="f1_macro" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
570 <param name="secondary_scoring" value="balanced_accuracy,accuracy" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
571 <param name="n_splits" value="5" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
572 <param name="infile1" value="imblearn_X.tabular" ftype="tabular" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
573 <param name="header1" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
574 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
575 <param name="infile2" value="imblearn_y.tabular" ftype="tabular" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
576 <param name="header2" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
577 <param name="selected_column_selector_option2" value="all_columns" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
578 <output name="outfile_result"> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
579 <assert_contents> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
580 <has_n_columns n="32" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
581 <has_text text="0.9945648481554453" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
582 <has_text text="0.9988888888888889" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
583 <has_text text="0.998" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
584 </assert_contents> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
585 </output> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
586 </test> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
587 <test> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
588 <param name="selected_search_algo" value="GridSearchCV" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
589 <param name="infile_estimator" value="pipeline12" ftype="h5mlm" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
590 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
591 <param name="sp_list" value="[10, 100, 200]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
592 <param name="sp_name" value="estimator__n_estimators" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
593 </repeat> |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
594 <repeat name="param_set"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
595 <param name="sp_list" value="[10, None]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
596 <param name="sp_name" value="n_features_to_select" /> |
8
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
bgruening
parents:
7
diff
changeset
|
597 </repeat> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
598 <param name="primary_scoring" value="r2" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
599 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
600 <param name="header1" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
601 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
602 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
603 <param name="header2" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
604 <param name="selected_column_selector_option2" value="all_columns" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
605 <output name="outfile_result"> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
606 <assert_contents> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
607 <has_n_columns n="15" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
608 <has_text text="0.78510" /> |
7
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
609 </assert_contents> |
4368259ff821
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
bgruening
parents:
6
diff
changeset
|
610 </output> |
6
7509d7059040
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c64ccc5850c8e061a95fb64e07ed388384e82393
bgruening
parents:
5
diff
changeset
|
611 </test> |
10
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
8
diff
changeset
|
612 <test> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
613 <conditional name="search_algos"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
614 <param name="selected_search_algo" value="GridSearchCV" /> |
10
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
8
diff
changeset
|
615 </conditional> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
616 <param name="infile_estimator" value="pipeline05" ftype="h5mlm" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
617 <section name="search_params_builder"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
618 <repeat name="param_set"> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
619 <param name="sp_list" value="[10, 50, 100, 300]" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
620 <param name="sp_name" value="n_estimators" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
621 </repeat> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
622 </section> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
623 <param name="infile1" value="regression_X.tabular" ftype="tabular" /> |
10
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
8
diff
changeset
|
624 <param name="header1" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
625 <param name="selected_column_selector_option" value="all_columns" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
626 <param name="infile2" value="regression_y.tabular" ftype="tabular" /> |
10
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
8
diff
changeset
|
627 <param name="header2" value="true" /> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
628 <param name="selected_column_selector_option2" value="all_columns" /> |
10
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
8
diff
changeset
|
629 <conditional name="outer_split"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
630 <param name="split_mode" value="nested_cv" /> |
10
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
8
diff
changeset
|
631 <conditional name="cv_selector"> |
25
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
632 <param name='selected_cv' value="KFold" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
24
diff
changeset
|
633 <param name="n_splits" value="3" /> |
10
82b6104d4682
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634 <param name="shuffle" value="true" /> |
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635 <param name="random_state" value="123" /> |
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636 </conditional> |
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637 </conditional> |
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638 <output name="outfile_result"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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639 <assert_contents> |
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640 <has_n_columns n="4" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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641 <has_text text="0.8355084087564864" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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642 </assert_contents> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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643 </output> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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644 </test> |
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645 </tests> |
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646 <help> |
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647 <![CDATA[ |
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648 **What it does** |
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649 Searches optimized parameter settings for an estimator or pipeline through either exhaustive grid cross validation search or Randomized cross validation search. |
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650 please refer to `Scikit-learn model_selection GridSearchCV`_, `Scikit-learn model_selection RandomizedSearchCV`_ and `Tuning hyper-parameters`_. |
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651 |
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652 **Return** |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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653 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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654 Outputs `cv_results_` from SearchCV in a tabular dataset if no train_test_split, otherwise the test score(s). Besides, Output of the SearchCV object is optional. |
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655 |
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656 **How to choose search patameters grid?** |
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657 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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658 Please refer to `svm`_, `linear_model`_, `ensemble`_, `naive_bayes`_, `tree`_, `neighbors`_ and `xgboost`_ for estimator parameters. |
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659 Refer to `sklearn.preprocessing`_, `feature_selection`_, `decomposition`_, `kernel_approximation`_, `cluster.FeatureAgglomeration`_ |
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660 and `skrebate`_ for parameter in the pre-processing steps. |
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661 |
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662 **Search parameter list** can be list, numpy array, or distribution. The evaluation of settings supports operations in Math, |
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663 list comprehension, numpy.arange(np_arange), most numpy.random(e.g., np_random_uniform) and some scipy.stats(e.g., scipy_stats_zipf) classes or functions, and others. |
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664 |
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665 Examples: |
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666 |
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667 - [3, 5, 7, 9] |
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668 |
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669 - list(range(50, 1001, 50)) |
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670 |
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671 - np_arange(0.01, 1, 0.1) |
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672 |
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673 - np_random_choice(list(range(1, 51)) + [None], size=20) |
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674 |
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675 - scipy_stats_randint(1, 11) |
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676 |
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677 **Estimator / Preprocessor search (additional `:` in the front)**:: |
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678 |
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679 : [sklearn_tree.DecisionTreeRegressor(), sklearn_tree.ExtraTreeRegressor()] |
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680 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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681 : [sklearn_feature_selection.SelectKBest(), sklearn_feature_selection.VarianceThreshold(), |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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682 skrebate_ReliefF(), sklearn_preprocessing.RobustScaler()] |
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683 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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684 **Hot number/keyword for preprocessors**:: |
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685 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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686 0 sklearn_preprocessing.StandardScaler(copy=True, with_mean=True, with_std=True) |
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687 1 sklearn_preprocessing.Binarizer(copy=True, threshold=0.0) |
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688 2 sklearn_preprocessing.MaxAbsScaler(copy=True) |
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689 3 sklearn_preprocessing.Normalizer(copy=True, norm='l2') |
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690 4 sklearn_preprocessing.MinMaxScaler(copy=True, feature_range=(0, 1)) |
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691 5 sklearn_preprocessing.PolynomialFeatures(degree=2, include_bias=True, interaction_only=False) |
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692 6 sklearn_preprocessing.RobustScaler(copy=True, quantile_range=(25.0, 75.0), with_centering=True, with_scaling=True) |
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693 7 sklearn_feature_selection.SelectKBest(k=10, score_func=<function f_classif at 0x113806d90>) |
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694 8 sklearn_feature_selection.GenericUnivariateSelect(mode='percentile', param=1e-05, score_func=<function f_classif at 0x113806d90>) |
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695 9 sklearn_feature_selection.SelectPercentile(percentile=10, score_func=<function f_classif at 0x113806d90>) |
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696 10 sklearn_feature_selection.SelectFpr(alpha=0.05, score_func=<function f_classif at 0x113806d90>) |
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697 11 sklearn_feature_selection.SelectFdr(alpha=0.05, score_func=<function f_classif at 0x113806d90>) |
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698 12 sklearn_feature_selection.SelectFwe(alpha=0.05, score_func=<function f_classif at 0x113806d90>) |
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699 13 sklearn_feature_selection.VarianceThreshold(threshold=0.0) |
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700 14 sklearn_decomposition.FactorAnalysis(copy=True, iterated_power=3, max_iter=1000, n_components=None, |
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701 noise_variance_init=None, random_state=0, svd_method='randomized', tol=0.01) |
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702 15 sklearn_decomposition.FastICA(algorithm='parallel', fun='logcosh', fun_args=None, |
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703 max_iter=200, n_components=None, random_state=0, tol=0.0001, w_init=None, whiten=True) |
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704 16 sklearn_decomposition.IncrementalPCA(batch_size=None, copy=True, n_components=None, whiten=False) |
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705 17 sklearn_decomposition.KernelPCA(alpha=1.0, coef0=1, copy_X=True, degree=3, eigen_solver='auto', |
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706 fit_inverse_transform=False, gamma=None, kernel='linear', kernel_params=None, max_iter=None, |
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707 n_components=None, random_state=0, remove_zero_eig=False, tol=0) |
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708 18 sklearn_decomposition.LatentDirichletAllocation(batch_size=128, doc_topic_prior=None, evaluate_every=-1, learning_decay=0.7, |
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709 learning_method=None, learning_offset=10.0, max_doc_update_iter=100, max_iter=10, mean_change_tol=0.001, n_components=10, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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710 n_topics=None, perp_tol=0.1, random_state=0, topic_word_prior=None, total_samples=1000000.0, verbose=0) |
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711 19 sklearn_decomposition.MiniBatchDictionaryLearning(alpha=1, batch_size=3, dict_init=None, fit_algorithm='lars', |
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712 n_components=None, n_iter=1000, random_state=0, shuffle=True, split_sign=False, transform_algorithm='omp', |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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713 transform_alpha=None, transform_n_nonzero_coefs=None, verbose=False) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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714 20 sklearn_decomposition.MiniBatchSparsePCA(alpha=1, batch_size=3, callback=None, method='lars', n_components=None, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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715 n_iter=100, random_state=0, ridge_alpha=0.01, shuffle=True, verbose=False) |
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716 21 sklearn_decomposition.NMF(alpha=0.0, beta_loss='frobenius', init=None, l1_ratio=0.0, max_iter=200, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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717 n_components=None, random_state=0, shuffle=False, solver='cd', tol=0.0001, verbose=0) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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718 22 sklearn_decomposition.PCA(copy=True, iterated_power='auto', n_components=None, random_state=0, svd_solver='auto', tol=0.0, whiten=False) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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719 23 sklearn_decomposition.SparsePCA(U_init=None, V_init=None, alpha=1, max_iter=1000, method='lars', |
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720 n_components=None, random_state=0, ridge_alpha=0.01, tol=1e-08, verbose=False) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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721 24 sklearn_decomposition.TruncatedSVD(algorithm='randomized', n_components=2, n_iter=5, random_state=0, tol=0.0) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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722 25 sklearn_kernel_approximation.Nystroem(coef0=None, degree=None, gamma=None, kernel='rbf', |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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723 kernel_params=None, n_components=100, random_state=0) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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724 26 sklearn_kernel_approximation.RBFSampler(gamma=1.0, n_components=100, random_state=0) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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725 27 sklearn_kernel_approximation.AdditiveChi2Sampler(sample_interval=None, sample_steps=2) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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726 28 sklearn_kernel_approximation.SkewedChi2Sampler(n_components=100, random_state=0, skewedness=1.0) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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727 29 sklearn_cluster.FeatureAgglomeration(affinity='euclidean', compute_full_tree='auto', connectivity=None, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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728 linkage='ward', memory=None, n_clusters=2, pooling_func=<function mean at 0x113078ae8>) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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729 30 skrebate_ReliefF(discrete_threshold=10, n_features_to_select=10, n_neighbors=100, verbose=False) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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730 31 skrebate_SURF(discrete_threshold=10, n_features_to_select=10, verbose=False) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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731 32 skrebate_SURFstar(discrete_threshold=10, n_features_to_select=10, verbose=False) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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732 33 skrebate_MultiSURF(discrete_threshold=10, n_features_to_select=10, verbose=False) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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733 34 skrebate_MultiSURFstar(discrete_threshold=10, n_features_to_select=10, verbose=False) |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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734 'sk_prep_all': All sklearn preprocessing estimators, i.e., 0-6 |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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735 'fs_all': All feature_selection estimators, i.e., 7-13 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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736 'decomp_all': All decomposition estimators, i.e., 14-24 |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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737 'k_appr_all': All kernel_approximation estimators, i.e., 25-28 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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738 'reb_all': All skrebate estimators, i.e., 30-34 |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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739 'all_0': All except the imbalanced-learn samplers, i.e., 0-34 |
82b6104d4682
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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740 'imb_all': All imbalanced-learn sampling methods, i.e., 35-53. |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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changeset
|
741 **CAUTION**: Mix of imblearn and other preprocessors may not work. |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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742 None: opt out of preprocessor |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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743 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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744 Support mix (CAUTION: Mix of imblearn and other preprocessors may not work), e.g.:: |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d
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745 |
10
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
746 : [None, 'sk_prep_all', 21, 'k_appr_all', sklearn_feature_selection.SelectKBest(k=50)] |
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747 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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748 |
8
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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749 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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750 **Whether to do train_test_split?** |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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|
751 |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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752 Please refer to `https://scikit-learn.org/stable/modules/cross_validation.html#cross-validation`_ |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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753 |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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754 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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changeset
|
755 .. image:: https://scikit-learn.org/stable/_images/grid_search_cross_validation.png |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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changeset
|
756 :height: 300 |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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757 :width: 400 |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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changeset
|
758 |
1c4a241bef5c
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
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|
759 |
0
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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diff
changeset
|
760 .. _`Scikit-learn model_selection GridSearchCV`: http://scikit-learn.org/stable/modules/generated/sklearn.model_selection.GridSearchCV.html |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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changeset
|
761 .. _`Scikit-learn model_selection RandomizedSearchCV`: http://scikit-learn.org/stable/modules/generated/sklearn.model_selection.RandomizedSearchCV.html |
91bf3f0d7455
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762 .. _`Tuning hyper-parameters`: http://scikit-learn.org/stable/modules/grid_search.html |
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763 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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changeset
|
764 .. _`svm`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.svm |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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|
765 .. _`linear_model`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.linear_model |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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766 .. _`ensemble`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.ensemble |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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changeset
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767 .. _`naive_bayes`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.naive_bayes |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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768 .. _`tree`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.tree |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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769 .. _`neighbors`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.neighbors |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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changeset
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770 .. _`xgboost`: https://xgboost.readthedocs.io/en/latest/python/python_api.html |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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771 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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|
772 .. _`sklearn.preprocessing`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.preprocessing |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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|
773 .. _`feature_selection`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.feature_selection |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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changeset
|
774 .. _`decomposition`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.decomposition |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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changeset
|
775 .. _`kernel_approximation`: http://scikit-learn.org/stable/modules/classes.html#module-sklearn.kernel_approximation |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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changeset
|
776 .. _`cluster.FeatureAgglomeration`: http://scikit-learn.org/stable/modules/generated/sklearn.cluster.FeatureAgglomeration.html |
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|
777 .. _`skrebate`: https://epistasislab.github.io/scikit-rebate/using/ |
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778 .. _`https://scikit-learn.org/stable/modules/cross_validation.html#cross-validation`: https://scikit-learn.org/stable/modules/cross_validation.html#cross-validation |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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779 |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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780 ]]> |
91bf3f0d7455
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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781 </help> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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782 <expand macro="sklearn_citation"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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783 <expand macro="skrebate_citation" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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784 <expand macro="xgboost_citation" /> |
fc99237f3392
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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785 <expand macro="imblearn_citation" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1
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786 </expand> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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787 </tool> |