Mercurial > repos > bgruening > split_file_to_collection

changeset 1:750c1684d47c draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_to_collection commit c9554ac81af24fc22435750fa4ef8c5c6fc1dc25
author bgruening
date Mon, 18 Feb 2019 15:20:56 -0500
parents de3c2c88e710
children d150ac3d853d
files split_file_to_collection.xml
diffstat 1 files changed, 11 insertions(+), 13 deletions(-) [+]
line wrap: on
line diff
--- a/split_file_to_collection.xml	Tue Jul 17 14:37:13 2018 -0400
+++ b/split_file_to_collection.xml	Mon Feb 18 15:20:56 2019 -0500
@@ -65,7 +65,6 @@
             --file_names '$split_parms.newfilenames'
             --file_ext '$split_parms.select_ftype'
         #end if
-        > '$log'
     ]]></command>
     <inputs>
         <conditional name="split_parms">
@@ -100,15 +99,15 @@
 		                </param>
                         <param name="sub_regex" type="text" label="Pattern to replace match with" value="\1">
                             <sanitizer>
-          		                <valid>
-            		                <add preset="string.printable"/>
-            		                <remove value="&#92;" />
-           		                    <remove value="&apos;" />
-          			            </valid>
-          		                <mapping initial="none">
-            		                <add source="&#92;" target="__backslash__" />
-            		                <add source="&apos;" target="__sq__"/>
-          		                </mapping>
+                                <valid>
+                                    <add preset="string.printable"/>
+                                    <remove value="&#92;" />
+                                    <remove value="&apos;" />
+                                </valid>
+                                <mapping initial="none">
+                                    <add source="&#92;" target="__backslash__" />
+                                    <add source="&apos;" target="__sq__"/>
+                                </mapping>
 			                </sanitizer>
                         </param>
                     </when>
@@ -148,7 +147,6 @@
             <discover_datasets pattern="__name__" directory="out" visible="false" format="fastq"/>
             <filter>split_parms['select_ftype'] == "fastq"</filter>
         </collection>
-        <data name="log" format="txt" label="${tool.name} on ${on_string}: log" />
     </outputs>
     <tests>
         <test>
@@ -280,10 +278,10 @@
 @misc{githubsplit,
   author = {Easterly, Caleb},
   year = {2018},
-  title = {split_file_to_collection: a Galaxy tool},
+  title = {A Galxy tool for splitting a file into a collection},
   publisher = {GitHub},
   journal = {GitHub repository},
-  url = {https://github.com/galaxyproteomics/tools-galaxyp/tools/split_file_to_collection},
+  url = {https://github.com/bgruening/galaxytools/tools/text_processing/split_file_to_collection},
 }</citation>
     </citations>
 </tool>