Mercurial > repos > bgruening > text_processing
annotate unfold_column.xml @ 3:37e1eb05b1b4 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
author | bgruening |
---|---|
date | Fri, 26 Feb 2016 12:22:19 -0500 |
parents | 5314e5d6f040 |
children | 20344ce0c811 |
rev | line source |
---|---|
0 | 1 <tool id="tp_unfold_column_tool" name="Unfold" version="@BASE_VERSION@.0"> |
2 <description>columns from a table</description> | |
3 <macros> | |
4 <import>macros.xml</import> | |
5 </macros> | |
6 <expand macro="requirements" /> | |
7 <command interpreter="python"> | |
8 <![CDATA[ | |
9 unfold_column.py | |
10 '${infile}' | |
11 $column | |
3
37e1eb05b1b4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
parents:
0
diff
changeset
|
12 "${delimiter}" |
0 | 13 '${outfile}' |
14 ]]> | |
15 </command> | |
16 <inputs> | |
17 <param name="infile" format="tabular" type="data" label="File to unfold" /> | |
18 <param name="column" type="data_column" data_ref="infile" accept_default="true" label="Column to use for unfolding" /> | |
19 <param name="delimiter" type="select" label="Values in column are delimited by"> | |
20 <option value=" ">Whitespace</option> | |
21 <option value=".">Dot</option> | |
22 <option value=",">Comma</option> | |
23 <option value="-">Dash</option> | |
24 <option value="_">Underscore</option> | |
25 <option value="|">Pipe</option> | |
3
37e1eb05b1b4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
parents:
0
diff
changeset
|
26 <option value=";">Semicolon</option> |
0 | 27 </param> |
28 </inputs> | |
29 <outputs> | |
30 <data name="outfile" format_source="infile" metadata_source="infile" /> | |
31 </outputs> | |
32 <tests> | |
33 <test> | |
34 <param name="infile" value="unfold_column1.tabular" ftype="tabular"/> | |
35 <param name="delimiter" value=" "/> | |
36 <param name="column" value="3"/> | |
37 <output name="outfile" file="unfold_column_result1.tabular" ftype="tabular"/> | |
38 </test> | |
39 </tests> | |
40 <help> | |
41 <![CDATA[ | |
42 **What it does** | |
43 | |
44 This tool will unfold one column of your input dataset. | |
45 | |
46 ----- | |
47 | |
48 Input Example:: | |
49 | |
50 a b 1,2,3,4,5 c | |
51 | |
52 | |
53 Output Example:: | |
54 | |
55 a b 1 c | |
56 a b 2 c | |
57 a b 3 c | |
58 a b 4 c | |
59 a b 5 c | |
60 | |
61 @REFERENCES@ | |
62 ]]> | |
63 </help> | |
64 </tool> |