Mercurial > repos > bgruening > text_processing
annotate unfold_column.py @ 21:86755160afbf draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7
author | bgruening |
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date | Fri, 16 Aug 2024 10:41:54 +0000 |
parents | f46f0e4f75c4 |
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rev | line source |
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0 | 1 #!/usr/bin/env python |
2 | |
3 import sys | |
4 | |
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f46f0e4f75c4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
bgruening
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3
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5 out = open(sys.argv[4], "w+") |
0 | 6 |
3
37e1eb05b1b4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
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7 sep = sys.argv[3] |
37e1eb05b1b4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
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0
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changeset
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8 # un-sanitize Galaxy inputs |
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f46f0e4f75c4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
bgruening
parents:
3
diff
changeset
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9 if sep == "X": |
f46f0e4f75c4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
bgruening
parents:
3
diff
changeset
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10 sep = ";" |
3
37e1eb05b1b4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
parents:
0
diff
changeset
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11 |
0 | 12 with open(sys.argv[1]) as handle: |
13 for line in handle: | |
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f46f0e4f75c4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
bgruening
parents:
3
diff
changeset
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14 cols = line.split("\t") |
0 | 15 unfolding_column = int(sys.argv[2]) - 1 |
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f46f0e4f75c4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
bgruening
parents:
3
diff
changeset
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16 column_content = cols[unfolding_column] |
f46f0e4f75c4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
bgruening
parents:
3
diff
changeset
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17 for elem in column_content.split(sep): |
f46f0e4f75c4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
bgruening
parents:
3
diff
changeset
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18 out.write( |
f46f0e4f75c4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
bgruening
parents:
3
diff
changeset
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19 "\t".join( |
f46f0e4f75c4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
bgruening
parents:
3
diff
changeset
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20 cols[:unfolding_column] + [elem] + cols[unfolding_column + 1:] |
f46f0e4f75c4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
bgruening
parents:
3
diff
changeset
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21 ) |
f46f0e4f75c4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
bgruening
parents:
3
diff
changeset
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22 ) |
0 | 23 out.close() |